rna3266, rna3266 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3266
Unique Name	rna3266
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1520
Alignment location	CM002460.1:1164358..1166517 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100138g7.7675.mrna
Orig protein id	gnl\|cribi\|Naga_100138g7.7675
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1164358..1166517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100138g7	gene3144	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3266	rna3266-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27414.1	cds3257	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1164358..1166517+
coding sequence from alignment at CM002460.1:1164358..1166517+

mRNA sequence

>rna3266 ID=rna3266|Name=rna3266|organism=Nannochloropsis gaditana|type=mRNA|length=1520bp
AGGACAGGGACGATATTGCCTTGGCCATTGGTGAGGGGCGTGTTTGTGCC
ATAATGGGCATGAAACAAGATTCTTGCAGCTTGCTTAGACAGTAGCCGTG
TCTGCATCGCGAGTCTTTTGAATAATGGTAAAACTGTTGCGCACGACTTG
ACTAGTCAATGCATCCTCGTCTGAGGGGTATCTGCCCCCCTCCCGTCATG
CGACACCTGCCCTTTCACCGTATTTACCATTCCCGCACTCGATCCTTTCG
CATAAATCGAAGTACCACTAGTGACACATCATGCTCATCAGAAGCTACTG
CGCCGCCCTCTCCTTCATCGTTGCCGCAGCTCTCTTCAGCTCAGTTTTCG
CCTTCCTGCCTCCTCCCACGCCCCCACCTCCTACTCCCAAAGTCACGCAA
TTTAAGCCTTATTTCCATGCAATTTTTCATCATTTAGTAGCAGTCGTCCT
TCCATCGGCAGCCTTATGTTTTGGTGCAGTGCCTCCCCAGCCGGCGAATG
CGTTCGGTGAAGACATTGCGGCCAAGGTTCAAAAATCTTTGAACGAGGAC
ACGACGAAGAAGTACACGGAGGACGGCATGGACTTGGTGGAGACCCTGAA
AAGGCGAACTATCCAAAATAAAGCGAAAAACGACCGAATATTGATGGAAA
AGACATTTTTAAACTCGGAGGCGGGCATCTACGGACCATTTGACAAGTTC
ATCCCCGTCATGAAAAAGGACGGGCAATACGTCCTGCTCACCGAAGATCA
GTACAACACGCTGAAAGGCGAAGGGAAAATCGTCGGGAGGGATTTTGTGG
TGGACTATCAGGTAGGAAGACTTCCCTCCGCCTCCTCCCCCCTTGCCCAC
GGTGGTTCTCGTACCGCAAGCCCGACCGACGTCGAGCGTTTTCGGTCGTC
GTATTTATCTGTCTTCTCCGAGAGCTACCTTGAGCTCTCTCTTTTTTGAG
GGTGGTGGTAGGGCGCCTTGTTTACCGCCTGCAAATTCCCCCTTCTCCTT
CCACACTCATGCTTCTCTCGTGTTTGTTCTTTCCTACCTATGCCTTGTCT
CTGTCATCCTCTGGTCGCTAGAGAGCTACCTCGAGCTCTCTCTTTTTTGG
GGGTGGTGGTAGGACGCCTTGTTTACCGCCTGCGAATTCCCCCTTCTCCT
TCCACACTCATGCTTCTCTCGTGTTTGTTCTTCCTACCTATGCCTTGTCT
CTGTCATCCTCTGGCCGCTCTTGCCTTATTCCCCCCCTACCCTCTCCCTT
GCTGTCCTCTCTTTTCCCCTTGGCTCGCTTCGCACCAGGCGGAGAGTGCT
CCTGCTGCTGTGGAAGCACCGGTCATCGAGGAAGAAGACAAGAAAGCGAC
CTCCACAGGCTCATCGTCGCAGAAAACTTTGGAGGAGGATGACGCGGACT
TGTTTGAGGATGGAGATGCCGTGTGAGTCTCGAGGAGGACAAGGAGGGGG
GGGGTGCGACCGTTCAAGTTGAACAGAGATGGTATCGGAAGGAAAAGAAC
AAAGGATGCTTACAGGTTCC

protein sequence of rna3266

>rna3266-protein ID=rna3266-protein|Name=rna3266|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFH
HLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGM
DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQY
VLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST
GSSSQKTLEEDDADLFEDGDAV

mRNA from alignment at CM002460.1:1164358..1166517+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3266 ID=rna3266|Name=rna3266|organism=Nannochloropsis gaditana|type=mRNA|length=2160bp|location=Sequence derived from alignment at CM002460.1:1164358..1166517+ (Nannochloropsis gaditana)
AGGACAGGGACGATATTGCCTTGGCCATTGGTGAGGGGCGTGTTTGTGCC
ATAATGGGCATGAAACAAGATTCTTGCAGCTTGCTTAGACAGTAGCCGTG
TCTGCATCGCGAGTCTTTTGAATAATGGTAAAACTGTTGCGCACGACTTG
ACTAGTCAATGCATCCTCGTCTGAGGGGTatctgcccccctcccgtcatG
CGACACCTGCCCTTTCACCGTATTTACCATTCCCGCACTCGATCCTTTCG
CATAAATCGAAGTACCACTAGTGACACATCATGCTCATCAGAAGCTACTg
cgccgccctctccttcatcgTTGCCGCAGCTCTCTTCAGCTCAGTTttcg
ccttcctgcctcctcccacgcccccacctcctacTCCCAAAGTCACGCAA
TTTAAGCCTTATTTCCATGCAATTTTTCATCATTTAGTAGCAGTCGTCCT
TCCATCGGCAGCCTTATGTTTTGGTGCAGTGCCTCCCCAGCCGGCGAATG
CGTTCGGTGAAGACATTGCGGCCAAGGTAAGTTCGAGGACAGAGGTACAA
AAAGGGGAACGTTGCACGGTTGGCTTTTCAACACATAGCTGAGCGATCAT
CTTCATGAATCTCCCTGTAGGTTCAAAAATCTTTGAACGAGGACACGACG
AAGAAGTACACGGAGGACGGCATGGACTTGGTGGAGACCCTGAAAAGGCG
GTGAGTctagaggagggggagggaaggaggggaaggagggaaggtaggga
ggggggacgagggaagggagaataAGTACTGAGGGGCATGTGCGTAACCT
AGGGTCACGCTCGCCTTATAGCTTGATTAAAATGAGGTCATGGAGTGCAT
CTATGATGTGAcacgctcgcctcctcctgccaatcttcttccttttcatg
tCACGCAGAACTATCCAAAATAAAGCGAAAAACGACCGAATATTGATGGA
AAAGACATTTTTAAACTCGGAGGCGGGCATCTACGGACCATTTGACAagt
gagagggggggaaaggaaggcggggggaaggggaatggaagaggaggata
aggGCAGGATGGATCGCAGTTTGGGGCAAAACCTGTGAGCAGACAtcgcg
ggggagaaggctggTGTACAGGCCCATAGTGCTGGGATGAGATACCCATG
AATGCCCAATGGGTTTTCATGCACACATTTACCCATCTTTcgctcatcct
cccttcctccccccctccctgcttcgtctcctctcccttcaggTTCATCC
CCGTCATGAAAAAGGACGGGCAATACGTCCTGCTCACCGAAGATCAGTAC
AACACGCTGAAAGGCGAAGGGAAAATCGTCGGGAGGGATTTTGTGGTGGA
CTATCAGGTAGGAAGacttccctccgcctcctccccccttgcccacGGTG
GTTCTCGTACCGCAAGCCCGACCGACGTCGAGCGTTTTCGGTCGTCGTAT
TTATCTGTCTTCTCCGAGAGCTACCTTGAGCTCTCTCTTTTTTGAGGGTG
GTGGTAGGGCGCCTTGTTTACCGCCTGCAaattcccccttctccttccac
actCATGCTTCTCTCGTGTTTGTTCTTTCCTACCTATGCCTTGTCTCTGT
CATCCTCTGGTCGCTAGAGAGCTACCTCGAgctctctcttttttgggggt
gGTGGTAGGACGCCTTGTTTACCGCCTGCGaattcccccttctccttcca
cactCATGCTTCTCTCGTGTTTGTTCTTCCTACCTATGCCTTGTCTCTGT
CATCCTCTGGCCGCTCTTGCCTTAttccccccctaccctctcccttgctg
tcctctcttttccccttggcTCGCTTCGCACCAGGCGGAGAgtgctcctg
ctgctgtggAAGCACCGGtcatcgaggaagaagacaagaAAGCGACCTCC
ACAGGTAGGGAGCGaggtcgagaaggagggcgggaggaagcagacgTAAG
GGGGAGGTAAAGTGAGCCTTCCTGTACTCATGTGGGATATACGGACAGGC
TCATCGTCGCAGAAaactttggaggaggatgacgcggACTTGTTTGAGGA
TGGAGATGCCGTGTGAGtctcgaggaggacaaggagggggggggtgcgaC
CGTTCAAGTTGAACAGAGATGGTatcggaaggaaaagaacAAAGGATGCT
TACAGGTTCC

Coding sequence (CDS) from alignment at CM002460.1:1164358..1166517+

>rna3266 ID=rna3266|Name=rna3266|organism=Nannochloropsis gaditana|type=CDS|length=4014bp|location=Sequence derived from alignment at CM002460.1:1164358..1166517+ (Nannochloropsis gaditana)
ATGCTCATCAGAAGCTACTgcgccgccctctccttcatcgTTGCCGCAGC
TCTCTTCAGCTCAGTTttcgccttcctgcctcctcccacgcccccacctc
ctacTCCCAAAGTCACGCAATTTAAGCCTTATTTCCATGCAATTTTTCAT
CATTTAGTAGCAGTCGTCCTTCCATCGGCAGCCTTATGTTTTGGTGCAGT
GCCTCCCCAGCCGGCGAATGCGTTCGGTGAAGACATTGCGGCCAAGGTTC
AAAAATCTTTGAACGAGGACACGACGAAGAAGTACACGGAGGACGGCATG
GACTTGGTGGAGACCCTGAAAAGGCGAACTATCCAAAATAAAGCGAAAAA
CGACCGAATATTGATGGAAAAGACATTTTTAAACTCGGAGGCGGGCATCT
ACGGACCATTTGACAagTTCATCCCCGTCATGAAAAAGGACGGGCAATAC
GTCCTGCTCACCGAAGATCAGTACAACACGCTGAAAGGCGAAGGGAAAAT
CGTCGGGAGGGATTTTGTGGTGGACTATCAGGCGGAGAgtgctcctgctg
ctgtggAAGCACCGGtcatcgaggaagaagacaagaAAGCGACCTCCACA
GGCTCATCGTCGCAGAAaactttggaggaggatgacgcggACTTGTTTGA
GGATGGAGATGCCGTGTGAATGCTCATCAGAAGCTACTgcgccgccctct
ccttcatcgTTGCCGCAGCTCTCTTCAGCTCAGTTttcgccttcctgcct
cctcccacgcccccacctcctacTCCCAAAGTCACGCAATTTAAGCCTTA
TTTCCATGCAATTTTTCATCATTTAGTAGCAGTCGTCCTTCCATCGGCAG
CCTTATGTTTTGGTGCAGTGCCTCCCCAGCCGGCGAATGCGTTCGGTGAA
GACATTGCGGCCAAGGTTCAAAAATCTTTGAACGAGGACACGACGAAGAA
GTACACGGAGGACGGCATGGACTTGGTGGAGACCCTGAAAAGGCGAACTA
TCCAAAATAAAGCGAAAAACGACCGAATATTGATGGAAAAGACATTTTTA
AACTCGGAGGCGGGCATCTACGGACCATTTGACAagTTCATCCCCGTCAT
GAAAAAGGACGGGCAATACGTCCTGCTCACCGAAGATCAGTACAACACGC
TGAAAGGCGAAGGGAAAATCGTCGGGAGGGATTTTGTGGTGGACTATCAG
GCGGAGAgtgctcctgctgctgtggAAGCACCGGtcatcgaggaagaaga
caagaAAGCGACCTCCACAGGCTCATCGTCGCAGAAaactttggaggagg
atgacgcggACTTGTTTGAGGATGGAGATGCCGTGTGAATGCTCATCAGA
AGCTACTgcgccgccctctccttcatcgTTGCCGCAGCTCTCTTCAGCTC
AGTTttcgccttcctgcctcctcccacgcccccacctcctacTCCCAAAG
TCACGCAATTTAAGCCTTATTTCCATGCAATTTTTCATCATTTAGTAGCA
GTCGTCCTTCCATCGGCAGCCTTATGTTTTGGTGCAGTGCCTCCCCAGCC
GGCGAATGCGTTCGGTGAAGACATTGCGGCCAAGGTTCAAAAATCTTTGA
ACGAGGACACGACGAAGAAGTACACGGAGGACGGCATGGACTTGGTGGAG
ACCCTGAAAAGGCGAACTATCCAAAATAAAGCGAAAAACGACCGAATATT
GATGGAAAAGACATTTTTAAACTCGGAGGCGGGCATCTACGGACCATTTG
ACAagTTCATCCCCGTCATGAAAAAGGACGGGCAATACGTCCTGCTCACC
GAAGATCAGTACAACACGCTGAAAGGCGAAGGGAAAATCGTCGGGAGGGA
TTTTGTGGTGGACTATCAGGCGGAGAgtgctcctgctgctgtggAAGCAC
CGGtcatcgaggaagaagacaagaAAGCGACCTCCACAGGCTCATCGTCG
CAGAAaactttggaggaggatgacgcggACTTGTTTGAGGATGGAGATGC
CGTGTGAATGCTCATCAGAAGCTACTgcgccgccctctccttcatcgTTG
CCGCAGCTCTCTTCAGCTCAGTTttcgccttcctgcctcctcccacgccc
ccacctcctacTCCCAAAGTCACGCAATTTAAGCCTTATTTCCATGCAAT
TTTTCATCATTTAGTAGCAGTCGTCCTTCCATCGGCAGCCTTATGTTTTG
GTGCAGTGCCTCCCCAGCCGGCGAATGCGTTCGGTGAAGACATTGCGGCC
AAGGTTCAAAAATCTTTGAACGAGGACACGACGAAGAAGTACACGGAGGA
CGGCATGGACTTGGTGGAGACCCTGAAAAGGCGAACTATCCAAAATAAAG
CGAAAAACGACCGAATATTGATGGAAAAGACATTTTTAAACTCGGAGGCG
GGCATCTACGGACCATTTGACAagTTCATCCCCGTCATGAAAAAGGACGG
GCAATACGTCCTGCTCACCGAAGATCAGTACAACACGCTGAAAGGCGAAG
GGAAAATCGTCGGGAGGGATTTTGTGGTGGACTATCAGGCGGAGAgtgct
cctgctgctgtggAAGCACCGGtcatcgaggaagaagacaagaAAGCGAC
CTCCACAGGCTCATCGTCGCAGAAaactttggaggaggatgacgcggACT
TGTTTGAGGATGGAGATGCCGTGTGAATGCTCATCAGAAGCTACTgcgcc
gccctctccttcatcgTTGCCGCAGCTCTCTTCAGCTCAGTTttcgcctt
cctgcctcctcccacgcccccacctcctacTCCCAAAGTCACGCAATTTA
AGCCTTATTTCCATGCAATTTTTCATCATTTAGTAGCAGTCGTCCTTCCA
TCGGCAGCCTTATGTTTTGGTGCAGTGCCTCCCCAGCCGGCGAATGCGTT
CGGTGAAGACATTGCGGCCAAGGTTCAAAAATCTTTGAACGAGGACACGA
CGAAGAAGTACACGGAGGACGGCATGGACTTGGTGGAGACCCTGAAAAGG
CGAACTATCCAAAATAAAGCGAAAAACGACCGAATATTGATGGAAAAGAC
ATTTTTAAACTCGGAGGCGGGCATCTACGGACCATTTGACAagTTCATCC
CCGTCATGAAAAAGGACGGGCAATACGTCCTGCTCACCGAAGATCAGTAC
AACACGCTGAAAGGCGAAGGGAAAATCGTCGGGAGGGATTTTGTGGTGGA
CTATCAGGCGGAGAgtgctcctgctgctgtggAAGCACCGGtcatcgagg
aagaagacaagaAAGCGACCTCCACAGGCTCATCGTCGCAGAAaactttg
gaggaggatgacgcggACTTGTTTGAGGATGGAGATGCCGTGTGAATGCT
CATCAGAAGCTACTgcgccgccctctccttcatcgTTGCCGCAGCTCTCT
TCAGCTCAGTTttcgccttcctgcctcctcccacgcccccacctcctacT
CCCAAAGTCACGCAATTTAAGCCTTATTTCCATGCAATTTTTCATCATTT
AGTAGCAGTCGTCCTTCCATCGGCAGCCTTATGTTTTGGTGCAGTGCCTC
CCCAGCCGGCGAATGCGTTCGGTGAAGACATTGCGGCCAAGGTTCAAAAA
TCTTTGAACGAGGACACGACGAAGAAGTACACGGAGGACGGCATGGACTT
GGTGGAGACCCTGAAAAGGCGAACTATCCAAAATAAAGCGAAAAACGACC
GAATATTGATGGAAAAGACATTTTTAAACTCGGAGGCGGGCATCTACGGA
CCATTTGACAagTTCATCCCCGTCATGAAAAAGGACGGGCAATACGTCCT
GCTCACCGAAGATCAGTACAACACGCTGAAAGGCGAAGGGAAAATCGTCG
GGAGGGATTTTGTGGTGGACTATCAGGCGGAGAgtgctcctgctgctgtg
gAAGCACCGGtcatcgaggaagaagacaagaAAGCGACCTCCACAGGCTC
ATCGTCGCAGAAaactttggaggaggatgacgcggACTTGTTTGAGGATG
GAGATGCCGTGTGA

Synonyms

Publications