EWM27414.1, cds3257 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|585109649|gb|EWM27414.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana]) HSP 1 Score: 453.751 bits (1166), Expect = 1.675e-161 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV
Sbjct: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|585109650|gb|EWM27415.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana]) HSP 1 Score: 347.821 bits (891), Expect = 1.746e-119 Identity = 182/200 (91.00%), Postives = 187/200 (93.50%), Query Frame = 0
Query: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST 200
MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQ P+A +P+ + A+ T
Sbjct: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|553184008|ref|XP_005854010.1| (hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526] >gi|553185844|ref|XP_005854320.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422294744|gb|EKU22044.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422295048|gb|EKU22347.1| hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 317.39 bits (812), Expect = 5.825e-108 Identity = 187/222 (84.23%), Postives = 190/222 (85.59%), Query Frame = 0
Query: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
MLIRSYCAALSFIVAAALFSS FAFLPPPTPPPPTPKVTQFKPYF A+FHHL+AVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR FIPVMKKDGQYVLLTE+QYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV
Sbjct: 1 MLIRSYCAALSFIVAAALFSSAFAFLPPPTPPPPTPKVTQFKPYFRAVFHHLLAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR------------------------------FIPVMKKDGQYVLLTEEQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 192
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|1210523061|dbj|GAX18112.1| (hypothetical protein FisN_25Hh093 [Fistulifera solaris]) HSP 1 Score: 78.5666 bits (192), Expect = 4.233e-14 Identity = 65/225 (28.89%), Postives = 95/225 (42.22%), Query Frame = 0
Query: 10 LSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPP-------------QPANAFGEDIAAKVQKS--------------LNEDTTKKYTEDGM-----------------DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPV 189
L+ ++ SS FAF P PP P HA H A+V AA+ F + P P + GE I +++ + D +KY + G +L+E L++++I NK KN+ I+ +KTF N ++ +GPFDK + +M DGQ + LL Q LK G I GR FV A+ AA +A V
Sbjct: 4 LTAVLGMGALSSTFAFSTNPKPPHSKPLTC-----LHAQNHQTTALV---AAVSFCLISPFHAFADEYGREVEAPTFSTGETIEICIKRGPLGACTQTERRTVENDNDKAQKYFKGGKTQQSQLLANQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNTDGQTFTLLNNPQAMRLKDAGFIQGRKFVKQPTADEIEAAAKAEV 220
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|1210531388|dbj|GAX10056.1| (hypothetical protein FisN_25Lh093 [Fistulifera solaris]) HSP 1 Score: 72.4034 bits (176), Expect = 7.545e-12 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 0
Query: 92 TKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPV 189
++ E +L+E L++++I NK KN+ I+ +KTF N ++ +GPFDK + +M DGQ + LL Q LK G I GR FV A+ AA +A V
Sbjct: 122 NQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNMDGQTFTLLNNPQAMRLKDAGFIQGRKFVKQPTADEIEAAAKAEV 220
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|922852716|gb|KOO21385.1| (hypothetical protein Ctob_004530 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 60.077 bits (144), Expect = 1.304e-7 Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0
Query: 101 DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIV 168
+LV+ L R+ N N R++ EKT +G+YGPF K +PVM+ DG + ++ +Y+ LK +GKIV
Sbjct: 101 ELVKRLLERSAVNAEANARLVKEKTVAAGLSGVYGPFAKAVPVMRADGNFEEISFARYDKLKDKGKIV 168
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|223994917|ref|XP_002287142.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976258|gb|EED94585.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 62.003 bits (149), Expect = 1.363e-7 Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 0
Query: 77 EDIAAKVQKSLNEDTTKKYTE-DGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEA 187
+D + +V++ T Y E +G L++ L++++ NK KND I+ +KT LN + +GPFD+ + ++ DG+ + LL Q LK G I R FV+ E A+E
Sbjct: 1589 KDPSEEVKRKQERMITTGYEESEGNALIDKLRKQSEDNKEKNDMIVRQKTLLNDQGASFGPFDRQVVILNTDGKTFALLQNPQAMRLKKAGYIEDRKFVIQPSQEVIDDALEG 1701
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|219110345|ref|XP_002176924.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411459|gb|EEC51387.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 58.5362 bits (140), Expect = 7.068e-7 Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0
Query: 99 GMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVE 186
G L+E L+++T NK KN + KTF N ++ +GPFD+ + +M DG+ + LL Q LK G I GR FV + AA+E
Sbjct: 133 GNALIEKLRQQTEDNKEKNRLTVERKTFENDQSASFGPFDRQVVIMNTDGRTFTLLENPQAMRLKKAGFIEGRQFVKQPTKDDIAAALE 221 The following BLAST results are available for this feature:
BLAST of EWM27414.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|