EWM27414.1, cds3257 (CDS) Nannochloropsis gaditana

Overview
NameEWM27414.1
Unique Namecds3257
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1164638..1164883 +
Alignment locationCM002460.1:1164978..1165057 +
Alignment locationCM002460.1:1165266..1165355 +
Alignment locationCM002460.1:1165600..1165714 +
Alignment locationCM002460.1:1166192..1166261 +
Alignment locationCM002460.1:1166356..1166423 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27414.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100138g7.7675.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1164638..1164883 +
CM002460.1supercontigCM002460.1:1164978..1165057 +
CM002460.1supercontigCM002460.1:1165266..1165355 +
CM002460.1supercontigCM002460.1:1165600..1165714 +
CM002460.1supercontigCM002460.1:1166192..1166261 +
CM002460.1supercontigCM002460.1:1166356..1166423 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|585109649|gb|EWM27414.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 453.751 bits (1166), Expect = 1.675e-161
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
            MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV
Sbjct:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|585109650|gb|EWM27415.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 347.821 bits (891), Expect = 1.746e-119
Identity = 182/200 (91.00%), Postives = 187/200 (93.50%), Query Frame = 0
Query:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST 200
            MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQ    P+A  +P+     + A+ T
Sbjct:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|553184008|ref|XP_005854010.1| (hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526] >gi|553185844|ref|XP_005854320.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422294744|gb|EKU22044.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422295048|gb|EKU22347.1| hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.39 bits (812), Expect = 5.825e-108
Identity = 187/222 (84.23%), Postives = 190/222 (85.59%), Query Frame = 0
Query:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
            MLIRSYCAALSFIVAAALFSS FAFLPPPTPPPPTPKVTQFKPYF A+FHHL+AVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR                              FIPVMKKDGQYVLLTE+QYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV
Sbjct:    1 MLIRSYCAALSFIVAAALFSSAFAFLPPPTPPPPTPKVTQFKPYFRAVFHHLLAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR------------------------------FIPVMKKDGQYVLLTEEQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 192          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|1210523061|dbj|GAX18112.1| (hypothetical protein FisN_25Hh093 [Fistulifera solaris])

HSP 1 Score: 78.5666 bits (192), Expect = 4.233e-14
Identity = 65/225 (28.89%), Postives = 95/225 (42.22%), Query Frame = 0
Query:   10 LSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPP-------------QPANAFGEDIAAKVQKS--------------LNEDTTKKYTEDGM-----------------DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPV 189
            L+ ++     SS FAF   P PP   P         HA  H   A+V   AA+ F  + P              P  + GE I   +++                + D  +KY + G                  +L+E L++++I NK KN+ I+ +KTF N ++  +GPFDK + +M  DGQ + LL   Q   LK  G I GR FV    A+   AA +A V
Sbjct:    4 LTAVLGMGALSSTFAFSTNPKPPHSKPLTC-----LHAQNHQTTALV---AAVSFCLISPFHAFADEYGREVEAPTFSTGETIEICIKRGPLGACTQTERRTVENDNDKAQKYFKGGKTQQSQLLANQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNTDGQTFTLLNNPQAMRLKDAGFIQGRKFVKQPTADEIEAAAKAEV 220          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|1210531388|dbj|GAX10056.1| (hypothetical protein FisN_25Lh093 [Fistulifera solaris])

HSP 1 Score: 72.4034 bits (176), Expect = 7.545e-12
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 0
Query:   92 TKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPV 189
             ++  E   +L+E L++++I NK KN+ I+ +KTF N ++  +GPFDK + +M  DGQ + LL   Q   LK  G I GR FV    A+   AA +A V
Sbjct:  122 NQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNMDGQTFTLLNNPQAMRLKDAGFIQGRKFVKQPTADEIEAAAKAEV 220          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|922852716|gb|KOO21385.1| (hypothetical protein Ctob_004530 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 60.077 bits (144), Expect = 1.304e-7
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0
Query:  101 DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIV 168
            +LV+ L  R+  N   N R++ EKT     +G+YGPF K +PVM+ DG +  ++  +Y+ LK +GKIV
Sbjct:  101 ELVKRLLERSAVNAEANARLVKEKTVAAGLSGVYGPFAKAVPVMRADGNFEEISFARYDKLKDKGKIV 168          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|223994917|ref|XP_002287142.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976258|gb|EED94585.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 62.003 bits (149), Expect = 1.363e-7
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 0
Query:   77 EDIAAKVQKSLNEDTTKKYTE-DGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEA 187
            +D + +V++      T  Y E +G  L++ L++++  NK KND I+ +KT LN +   +GPFD+ + ++  DG+ + LL   Q   LK  G I  R FV+    E    A+E 
Sbjct: 1589 KDPSEEVKRKQERMITTGYEESEGNALIDKLRKQSEDNKEKNDMIVRQKTLLNDQGASFGPFDRQVVILNTDGKTFALLQNPQAMRLKKAGYIEDRKFVIQPSQEVIDDALEG 1701          
BLAST of EWM27414.1 vs. NCBI_GenBank
Match: gi|219110345|ref|XP_002176924.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411459|gb|EEC51387.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 58.5362 bits (140), Expect = 7.068e-7
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 0
Query:   99 GMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVE 186
            G  L+E L+++T  NK KN   +  KTF N ++  +GPFD+ + +M  DG+ + LL   Q   LK  G I GR FV     +   AA+E
Sbjct:  133 GNALIEKLRQQTEDNKEKNRLTVERKTFENDQSASFGPFDRQVVIMNTDGRTFTLLENPQAMRLKKAGFIEGRQFVKQPTKDDIAAALE 221          
The following BLAST results are available for this feature:
BLAST of EWM27414.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585109649|gb|EWM27414.1|1.675e-161100.00hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
gi|585109650|gb|EWM27415.1|1.746e-11991.00hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
gi|553184008|ref|XP_005854010.1|5.825e-10884.23hypothetical protein NGA_0184802 [Nannochloropsis ... [more]
gi|1210523061|dbj|GAX18112.1|4.233e-1428.89hypothetical protein FisN_25Hh093 [Fistulifera sol... [more]
gi|1210531388|dbj|GAX10056.1|7.545e-1239.39hypothetical protein FisN_25Lh093 [Fistulifera sol... [more]
gi|922852716|gb|KOO21385.1|1.304e-741.18hypothetical protein Ctob_004530 [Chrysochromulina... [more]
gi|223994917|ref|XP_002287142.1|1.363e-732.74predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219110345|ref|XP_002176924.1|7.068e-738.20predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3266rna3266Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications