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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100138g7.7676.mrna |
| Orig protein id | gnl|cribi|Naga_100138g7.7676 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:1164358..1166517 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3265 ID=rna3265|Name=rna3265|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
GATGCAACTTGAGCCCTGTTCCGTGAATTCACCTCTATGCCCTTATCACA
CAATCAGACCGGTACTGTCGACCAGGACAAAGCGATGTCAAAGACCGAGA
ATAATCACACGGTCCTCTTTGCGGTGGCGGCCACGGCGGCGACGGCTGGA
GCTCTGGCTGGCCCCTTGTCCTCCATGGTCCATCGCGCTTACAAACGGCA
TCGACACAGGAAACACACGCACTTCACCCTCGGGTCGTGGCGAGCACGGG
AATACGGACAGGCTGTGCGTTACTTACTTGCGTACCTAGAGCTCCCCTGG
AAGGACCGATTCTTCGACATGGGCCCGGGACCCGACTACCACCAGTTGGC
GTGGGTGGACGCGAAAGACGAGGCCGCCCACGACAAGGCGGTGGTCCCCT
TCAGCGCGCAGGGCTTGACGACTTACCTGGTGGTGGAAGAGCGTGGCTGG
TGTCAGATGGGGAGGGAGGGAAAGAGAAAGGGGGTGAAACACGCCCGGAC
GATCATGCGCTACTTAGGTCGCCAGTACGGATTGATCGGGCGGAATGTGA
AAGAGATGGAAGCTGTCGATCTGCTGCTGGATGAATTGCAGGATTTCACC
CTTGCCCTCCACCGGCTTGTACATAATCCCTCGTACGCTAGGGAGAAGGA
ACGTTTCTTCACCACCGCCCTGGCGTCCCGCCTCGGTGGCTTCGAAGACT
GGCTCCTGAACGAGAAGAAGACGCACAAGAAGAGCTCGCCCACAGGCGGC
TTGTGGCTGGTGGGAGGACGCATGACGGTGGCTGATTTTGTCCTGTATGA
CCTTCTGTCCCAAGCCCGGACGCTCTATCCCCCGGCGCTCTCCTCGCACC
GGGAGCTCCAAGACTTTACCTATCGATTCGAAGCACTCCCGTCTATCGCT
CAGTACTTAGGCTCAGAAGCTTGCCAGCTCTTGCCCCTCTTTATGGTCAA
GGTGGTGTGAAGGACGTAGGGAGGGGAGGGAAGGAGGGGAAGCGAATCAC
GAGTCCACAGAATGTGTGGGAAATGGCGCGGACGGAGGAGAAGAGGAAGA
CGATTTTGAGTTTTGTACGCGAATGCGGGGGTGGAGAGTGGGAGGAAAGG
GGGGGGGGGGTAATGAAATAGGGTCGCGAGAAGACATGGGGCCTCAGGAA
GCCTCCACATTCCTGCCGTGCTTTCAAAACAAAGCGTGTTCACTTACTTT
ATAAATCCATCGCTTCATACTTGATAAATATAGATCAACACATGTATATA
TAGCATACTTTCC back to topprotein sequence of rna3265 >rna3265-protein ID=rna3265-protein|Name=rna3265|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFH
HLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGM
DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQY
VLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTD
VERFRSSYLSVFSESYLELSLF back to topmRNA from alignment at CM002460.1:1164358..1166517+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3265 ID=rna3265|Name=rna3265|organism=Nannochloropsis gaditana|type=mRNA|length=2160bp|location=Sequence derived from alignment at CM002460.1:1164358..1166517+ (Nannochloropsis gaditana)
AGGACAGGGACGATATTGCCTTGGCCATTGGTGAGGGGCGTGTTTGTGCC
ATAATGGGCATGAAACAAGATTCTTGCAGCTTGCTTAGACAGTAGCCGTG
TCTGCATCGCGAGTCTTTTGAATAATGGTAAAACTGTTGCGCACGACTTG
ACTAGTCAATGCATCCTCGTCTGAGGGGTatctgcccccctcccgtcatG
CGACACCTGCCCTTTCACCGTATTTACCATTCCCGCACTCGATCCTTTCG
CATAAATCGAAGTACCACTAGTGACACATCATGCTCATCAGAAGCTACTg
cgccgccctctccttcatcgTTGCCGCAGCTCTCTTCAGCTCAGTTttcg
ccttcctgcctcctcccacgcccccacctcctacTCCCAAAGTCACGCAA
TTTAAGCCTTATTTCCATGCAATTTTTCATCATTTAGTAGCAGTCGTCCT
TCCATCGGCAGCCTTATGTTTTGGTGCAGTGCCTCCCCAGCCGGCGAATG
CGTTCGGTGAAGACATTGCGGCCAAGGTAAGTTCGAGGACAGAGGTACAA
AAAGGGGAACGTTGCACGGTTGGCTTTTCAACACATAGCTGAGCGATCAT
CTTCATGAATCTCCCTGTAGGTTCAAAAATCTTTGAACGAGGACACGACG
AAGAAGTACACGGAGGACGGCATGGACTTGGTGGAGACCCTGAAAAGGCG
GTGAGTctagaggagggggagggaaggaggggaaggagggaaggtaggga
ggggggacgagggaagggagaataAGTACTGAGGGGCATGTGCGTAACCT
AGGGTCACGCTCGCCTTATAGCTTGATTAAAATGAGGTCATGGAGTGCAT
CTATGATGTGAcacgctcgcctcctcctgccaatcttcttccttttcatg
tCACGCAGAACTATCCAAAATAAAGCGAAAAACGACCGAATATTGATGGA
AAAGACATTTTTAAACTCGGAGGCGGGCATCTACGGACCATTTGACAagt
gagagggggggaaaggaaggcggggggaaggggaatggaagaggaggata
aggGCAGGATGGATCGCAGTTTGGGGCAAAACCTGTGAGCAGACAtcgcg
ggggagaaggctggTGTACAGGCCCATAGTGCTGGGATGAGATACCCATG
AATGCCCAATGGGTTTTCATGCACACATTTACCCATCTTTcgctcatcct
cccttcctccccccctccctgcttcgtctcctctcccttcaggTTCATCC
CCGTCATGAAAAAGGACGGGCAATACGTCCTGCTCACCGAAGATCAGTAC
AACACGCTGAAAGGCGAAGGGAAAATCGTCGGGAGGGATTTTGTGGTGGA
CTATCAGGTAGGAAGacttccctccgcctcctccccccttgcccacGGTG
GTTCTCGTACCGCAAGCCCGACCGACGTCGAGCGTTTTCGGTCGTCGTAT
TTATCTGTCTTCTCCGAGAGCTACCTTGAGCTCTCTCTTTTTTGAGGGTG
GTGGTAGGGCGCCTTGTTTACCGCCTGCAaattcccccttctccttccac
actCATGCTTCTCTCGTGTTTGTTCTTTCCTACCTATGCCTTGTCTCTGT
CATCCTCTGGTCGCTAGAGAGCTACCTCGAgctctctcttttttgggggt
gGTGGTAGGACGCCTTGTTTACCGCCTGCGaattcccccttctccttcca
cactCATGCTTCTCTCGTGTTTGTTCTTCCTACCTATGCCTTGTCTCTGT
CATCCTCTGGCCGCTCTTGCCTTAttccccccctaccctctcccttgctg
tcctctcttttccccttggcTCGCTTCGCACCAGGCGGAGAgtgctcctg
ctgctgtggAAGCACCGGtcatcgaggaagaagacaagaAAGCGACCTCC
ACAGGTAGGGAGCGaggtcgagaaggagggcgggaggaagcagacgTAAG
GGGGAGGTAAAGTGAGCCTTCCTGTACTCATGTGGGATATACGGACAGGC
TCATCGTCGCAGAAaactttggaggaggatgacgcggACTTGTTTGAGGA
TGGAGATGCCGTGTGAGtctcgaggaggacaaggagggggggggtgcgaC
CGTTCAAGTTGAACAGAGATGGTatcggaaggaaaagaacAAAGGATGCT
TACAGGTTCC back to topCoding sequence (CDS) from alignment at CM002460.1:1164358..1166517+ >rna3265 ID=rna3265|Name=rna3265|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at CM002460.1:1164358..1166517+ (Nannochloropsis gaditana)
ATGCTCATCAGAAGCTACTgcgccgccctctccttcatcgTTGCCGCAGC
TCTCTTCAGCTCAGTTttcgccttcctgcctcctcccacgcccccacctc
ctacTCCCAAAGTCACGCAATTTAAGCCTTATTTCCATGCAATTTTTCAT
CATTTAGTAGCAGTCGTCCTTCCATCGGCAGCCTTATGTTTTGGTGCAGT
GCCTCCCCAGCCGGCGAATGCGTTCGGTGAAGACATTGCGGCCAAGGTTC
AAAAATCTTTGAACGAGGACACGACGAAGAAGTACACGGAGGACGGCATG
GACTTGGTGGAGACCCTGAAAAGGCGAACTATCCAAAATAAAGCGAAAAA
CGACCGAATATTGATGGAAAAGACATTTTTAAACTCGGAGGCGGGCATCT
ACGGACCATTTGACAagTTCATCCCCGTCATGAAAAAGGACGGGCAATAC
GTCCTGCTCACCGAAGATCAGTACAACACGCTGAAAGGCGAAGGGAAAAT
CGTCGGGAGGGATTTTGTGGTGGACTATCAGGTAGGAAGacttccctccg
cctcctccccccttgcccacGGTGGTTCTCGTACCGCAAGCCCGACCGAC
GTCGAGCGTTTTCGGTCGTCGTATTTATCTGTCTTCTCCGAGAGCTACCT
TGAGCTCTCTCTTTTTTGAATGCTCATCAGAAGCTACTgcgccgccctct
ccttcatcgTTGCCGCAGCTCTCTTCAGCTCAGTTttcgccttcctgcct
cctcccacgcccccacctcctacTCCCAAAGTCACGCAATTTAAGCCTTA
TTTCCATGCAATTTTTCATCATTTAGTAGCAGTCGTCCTTCCATCGGCAG
CCTTATGTTTTGGTGCAGTGCCTCCCCAGCCGGCGAATGCGTTCGGTGAA
GACATTGCGGCCAAGGTTCAAAAATCTTTGAACGAGGACACGACGAAGAA
GTACACGGAGGACGGCATGGACTTGGTGGAGACCCTGAAAAGGCGAACTA
TCCAAAATAAAGCGAAAAACGACCGAATATTGATGGAAAAGACATTTTTA
AACTCGGAGGCGGGCATCTACGGACCATTTGACAagTTCATCCCCGTCAT
GAAAAAGGACGGGCAATACGTCCTGCTCACCGAAGATCAGTACAACACGC
TGAAAGGCGAAGGGAAAATCGTCGGGAGGGATTTTGTGGTGGACTATCAG
GTAGGAAGacttccctccgcctcctccccccttgcccacGGTGGTTCTCG
TACCGCAAGCCCGACCGACGTCGAGCGTTTTCGGTCGTCGTATTTATCTG
TCTTCTCCGAGAGCTACCTTGAGCTCTCTCTTTTTTGAATGCTCATCAGA
AGCTACTgcgccgccctctccttcatcgTTGCCGCAGCTCTCTTCAGCTC
AGTTttcgccttcctgcctcctcccacgcccccacctcctacTCCCAAAG
TCACGCAATTTAAGCCTTATTTCCATGCAATTTTTCATCATTTAGTAGCA
GTCGTCCTTCCATCGGCAGCCTTATGTTTTGGTGCAGTGCCTCCCCAGCC
GGCGAATGCGTTCGGTGAAGACATTGCGGCCAAGGTTCAAAAATCTTTGA
ACGAGGACACGACGAAGAAGTACACGGAGGACGGCATGGACTTGGTGGAG
ACCCTGAAAAGGCGAACTATCCAAAATAAAGCGAAAAACGACCGAATATT
GATGGAAAAGACATTTTTAAACTCGGAGGCGGGCATCTACGGACCATTTG
ACAagTTCATCCCCGTCATGAAAAAGGACGGGCAATACGTCCTGCTCACC
GAAGATCAGTACAACACGCTGAAAGGCGAAGGGAAAATCGTCGGGAGGGA
TTTTGTGGTGGACTATCAGGTAGGAAGacttccctccgcctcctcccccc
ttgcccacGGTGGTTCTCGTACCGCAAGCCCGACCGACGTCGAGCGTTTT
CGGTCGTCGTATTTATCTGTCTTCTCCGAGAGCTACCTTGAGCTCTCTCT
TTTTTGAATGCTCATCAGAAGCTACTgcgccgccctctccttcatcgTTG
CCGCAGCTCTCTTCAGCTCAGTTttcgccttcctgcctcctcccacgccc
ccacctcctacTCCCAAAGTCACGCAATTTAAGCCTTATTTCCATGCAAT
TTTTCATCATTTAGTAGCAGTCGTCCTTCCATCGGCAGCCTTATGTTTTG
GTGCAGTGCCTCCCCAGCCGGCGAATGCGTTCGGTGAAGACATTGCGGCC
AAGGTTCAAAAATCTTTGAACGAGGACACGACGAAGAAGTACACGGAGGA
CGGCATGGACTTGGTGGAGACCCTGAAAAGGCGAACTATCCAAAATAAAG
CGAAAAACGACCGAATATTGATGGAAAAGACATTTTTAAACTCGGAGGCG
GGCATCTACGGACCATTTGACAagTTCATCCCCGTCATGAAAAAGGACGG
GCAATACGTCCTGCTCACCGAAGATCAGTACAACACGCTGAAAGGCGAAG
GGAAAATCGTCGGGAGGGATTTTGTGGTGGACTATCAGGTAGGAAGactt
ccctccgcctcctccccccttgcccacGGTGGTTCTCGTACCGCAAGCCC
GACCGACGTCGAGCGTTTTCGGTCGTCGTATTTATCTGTCTTCTCCGAGA
GCTACCTTGAGCTCTCTCTTTTTTGA back to top
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