EWM27415.1, cds3256 (CDS) Nannochloropsis gaditana

Overview
NameEWM27415.1
Unique Namecds3256
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1164638..1164883 +
Alignment locationCM002460.1:1164978..1165057 +
Alignment locationCM002460.1:1165266..1165355 +
Alignment locationCM002460.1:1165600..1165852 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27415.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100138g7.7676.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1164638..1164883 +
CM002460.1supercontigCM002460.1:1164978..1165057 +
CM002460.1supercontigCM002460.1:1165266..1165355 +
CM002460.1supercontigCM002460.1:1165600..1165852 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|585109650|gb|EWM27415.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 455.677 bits (1171), Expect = 3.024e-162
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTDVERFRSSYLSVFSESYLELSLF 222
            MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTDVERFRSSYLSVFSESYLELSLF
Sbjct:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTDVERFRSSYLSVFSESYLELSLF 222          
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|585109649|gb|EWM27414.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 349.362 bits (895), Expect = 4.021e-120
Identity = 182/200 (91.00%), Postives = 187/200 (93.50%), Query Frame = 0
Query:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199
            MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQ    P+A  +P+     + A+ T
Sbjct:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST 200          
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|553184008|ref|XP_005854010.1| (hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526] >gi|553185844|ref|XP_005854320.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422294744|gb|EKU22044.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422295048|gb|EKU22347.1| hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 237.654 bits (605), Expect = 1.826e-76
Identity = 147/200 (73.50%), Postives = 155/200 (77.50%), Query Frame = 0
Query:    1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199
            MLIRSYCAALSFIVAAALFSS FAFLPPPTPPPPTPKVTQFKPYF A+FHHL+AVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR                              FIPVMKKDGQYVLLTE+QYNTLKGEGKIVGRDFVVDYQ    P+A  +P+     + A+ T
Sbjct:    1 MLIRSYCAALSFIVAAALFSSAFAFLPPPTPPPPTPKVTQFKPYFRAVFHHLLAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR------------------------------FIPVMKKDGQYVLLTEEQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST 170          
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|1210523061|dbj|GAX18112.1| (hypothetical protein FisN_25Hh093 [Fistulifera solaris])

HSP 1 Score: 74.7146 bits (182), Expect = 9.935e-13
Identity = 60/209 (28.71%), Postives = 87/209 (41.63%), Query Frame = 0
Query:   10 LSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPP-------------QPANAFGEDIAAKVQK--------------SLNEDTTKKY-----------------TEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFV 173
            L+ ++     SS FAF   P PP   P         HA  H   A+V   AA+ F  + P              P  + GE I   +++                + D  +KY                  E   +L+E L++++I NK KN+ I+ +KTF N ++  +GPFDK + +M  DGQ + LL   Q   LK  G I GR FV
Sbjct:    4 LTAVLGMGALSSTFAFSTNPKPPHSKPLTC-----LHAQNHQTTALV---AAVSFCLISPFHAFADEYGREVEAPTFSTGETIEICIKRGPLGACTQTERRTVENDNDKAQKYFKGGKTQQSQLLANQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNTDGQTFTLLNNPQAMRLKDAGFIQGRKFV 204          
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|1210531388|dbj|GAX10056.1| (hypothetical protein FisN_25Lh093 [Fistulifera solaris])

HSP 1 Score: 69.707 bits (169), Expect = 6.536e-11
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 0
Query:   92 TKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFV 173
             ++  E   +L+E L++++I NK KN+ I+ +KTF N ++  +GPFDK + +M  DGQ + LL   Q   LK  G I GR FV
Sbjct:  122 NQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNMDGQTFTLLNNPQAMRLKDAGFIQGRKFV 204          
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|922852716|gb|KOO21385.1| (hypothetical protein Ctob_004530 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 60.4622 bits (145), Expect = 1.100e-7
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0
Query:  101 DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIV 168
            +LV+ L  R+  N   N R++ EKT     +G+YGPF K +PVM+ DG +  ++  +Y+ LK +GKIV
Sbjct:  101 ELVKRLLERSAVNAEANARLVKEKTVAAGLSGVYGPFAKAVPVMRADGNFEEISFARYDKLKDKGKIV 168          
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|223994917|ref|XP_002287142.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976258|gb|EED94585.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 62.3882 bits (150), Expect = 1.162e-7
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   77 EDIAAKVQKSLNEDTTKKYTE-DGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVV 174
            +D + +V++      T  Y E +G  L++ L++++  NK KND I+ +KT LN +   +GPFD+ + ++  DG+ + LL   Q   LK  G I  R FV+
Sbjct: 1589 KDPSEEVKRKQERMITTGYEESEGNALIDKLRKQSEDNKEKNDMIVRQKTLLNDQGASFGPFDRQVVILNTDGKTFALLQNPQAMRLKKAGYIEDRKFVI 1688          
The following BLAST results are available for this feature:
BLAST of EWM27415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585109650|gb|EWM27415.1|3.024e-162100.00hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
gi|585109649|gb|EWM27414.1|4.021e-12091.00hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
gi|553184008|ref|XP_005854010.1|1.826e-7673.50hypothetical protein NGA_0184802 [Nannochloropsis ... [more]
gi|1210523061|dbj|GAX18112.1|9.935e-1328.71hypothetical protein FisN_25Hh093 [Fistulifera sol... [more]
gi|1210531388|dbj|GAX10056.1|6.536e-1140.96hypothetical protein FisN_25Lh093 [Fistulifera sol... [more]
gi|922852716|gb|KOO21385.1|1.100e-741.18hypothetical protein Ctob_004530 [Chrysochromulina... [more]
gi|223994917|ref|XP_002287142.1|1.162e-734.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3265rna3265Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications