EWM27415.1, cds3256 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|585109650|gb|EWM27415.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana]) HSP 1 Score: 455.677 bits (1171), Expect = 3.024e-162 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0 Query: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTDVERFRSSYLSVFSESYLELSLF 222 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTDVERFRSSYLSVFSESYLELSLF Sbjct: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSASSPLAHGGSRTASPTDVERFRSSYLSVFSESYLELSLF 222
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|585109649|gb|EWM27414.1| (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana]) HSP 1 Score: 349.362 bits (895), Expect = 4.021e-120 Identity = 182/200 (91.00%), Postives = 187/200 (93.50%), Query Frame = 0 Query: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQ P+A +P+ + A+ T Sbjct: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST 200
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|553184008|ref|XP_005854010.1| (hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526] >gi|553185844|ref|XP_005854320.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422294744|gb|EKU22044.1| hypothetical protein NGA_0184801 [Nannochloropsis gaditana CCMP526] >gi|422295048|gb|EKU22347.1| hypothetical protein NGA_0184802 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 237.654 bits (605), Expect = 1.826e-76 Identity = 147/200 (73.50%), Postives = 155/200 (77.50%), Query Frame = 0 Query: 1 MLIRSYCAALSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQVGRLPSA-SSPLAHGGSRTASPT 199 MLIRSYCAALSFIVAAALFSS FAFLPPPTPPPPTPKVTQFKPYF A+FHHL+AVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR FIPVMKKDGQYVLLTE+QYNTLKGEGKIVGRDFVVDYQ P+A +P+ + A+ T Sbjct: 1 MLIRSYCAALSFIVAAALFSSAFAFLPPPTPPPPTPKVTQFKPYFRAVFHHLLAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRR------------------------------FIPVMKKDGQYVLLTEEQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATST 170
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|1210523061|dbj|GAX18112.1| (hypothetical protein FisN_25Hh093 [Fistulifera solaris]) HSP 1 Score: 74.7146 bits (182), Expect = 9.935e-13 Identity = 60/209 (28.71%), Postives = 87/209 (41.63%), Query Frame = 0 Query: 10 LSFIVAAALFSSVFAFLPPPTPPPPTPKVTQFKPYFHAIFHHLVAVVLPSAALCFGAVPP-------------QPANAFGEDIAAKVQK--------------SLNEDTTKKY-----------------TEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFV 173 L+ ++ SS FAF P PP P HA H A+V AA+ F + P P + GE I +++ + D +KY E +L+E L++++I NK KN+ I+ +KTF N ++ +GPFDK + +M DGQ + LL Q LK G I GR FV Sbjct: 4 LTAVLGMGALSSTFAFSTNPKPPHSKPLTC-----LHAQNHQTTALV---AAVSFCLISPFHAFADEYGREVEAPTFSTGETIEICIKRGPLGACTQTERRTVENDNDKAQKYFKGGKTQQSQLLANQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNTDGQTFTLLNNPQAMRLKDAGFIQGRKFV 204
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|1210531388|dbj|GAX10056.1| (hypothetical protein FisN_25Lh093 [Fistulifera solaris]) HSP 1 Score: 69.707 bits (169), Expect = 6.536e-11 Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 0 Query: 92 TKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFV 173 ++ E +L+E L++++I NK KN+ I+ +KTF N ++ +GPFDK + +M DGQ + LL Q LK G I GR FV Sbjct: 122 NQRQEESANELIEKLRQQSIDNKEKNEMIVAQKTFENDQSATFGPFDKQVLIMNMDGQTFTLLNNPQAMRLKDAGFIQGRKFV 204
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|922852716|gb|KOO21385.1| (hypothetical protein Ctob_004530 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 60.4622 bits (145), Expect = 1.100e-7 Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 101 DLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIV 168 +LV+ L R+ N N R++ EKT +G+YGPF K +PVM+ DG + ++ +Y+ LK +GKIV Sbjct: 101 ELVKRLLERSAVNAEANARLVKEKTVAAGLSGVYGPFAKAVPVMRADGNFEEISFARYDKLKDKGKIV 168
BLAST of EWM27415.1 vs. NCBI_GenBank
Match: gi|223994917|ref|XP_002287142.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976258|gb|EED94585.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 62.3882 bits (150), Expect = 1.162e-7 Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 0 Query: 77 EDIAAKVQKSLNEDTTKKYTE-DGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQ-YVLLTEDQYNTLKGEGKIVGRDFVV 174 +D + +V++ T Y E +G L++ L++++ NK KND I+ +KT LN + +GPFD+ + ++ DG+ + LL Q LK G I R FV+ Sbjct: 1589 KDPSEEVKRKQERMITTGYEESEGNALIDKLRKQSEDNKEKNDMIVRQKTLLNDQGASFGPFDRQVVILNTDGKTFALLQNPQAMRLKKAGYIEDRKFVI 1688 The following BLAST results are available for this feature:
BLAST of EWM27415.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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