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Properties
| Property Name | Value |
|---|
| Product | dna-directed rna polymerase ii subunit rpb4 |
| Orig transcript id | gnl|cribi|Naga_100003g170.1834.mrna |
| Orig protein id | gnl|cribi|Naga_100003g170.1834 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:809323..810652 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna326 ID=rna326|Name=rna326|organism=Nannochloropsis gaditana|type=mRNA|length=4100bp
TCTCCGGCACATATTTTTTCAGGCGAGGGTTTGGCAAAGAATCTGCGTTG
TACCTCAATTTCACTCATGTTCTTGAGGTCGAGGGTGTGGCTCGAAGGAA
TTATGCATATGTCACCGCACCCAAACCTGATCCTGACGCGCAAATTACAC
AGGACCGTAAAGGATCAAGCGAAAATGCAAGCAGTGTAGCAAAAGAGGGG
GACCGTGGAAAACATTTTCGGAAGGCGTGTTCAATTTTCCCTGGGGCGGC
ACGAACCGACCTGCACGGGTGAAGCAGCTCTTTGGTGTGGGTGCTAATCT
CATATGCCATTTCCCTCCTCGGGCCTCCTGAAAGTGGCAGCCGCAGGCGG
AGAAGAAAGCATGCAGCACGTTCGCCAGCGAAGCCTGGGTAGCAGCAAAG
GAAGCAGCTTCAACGATCACAGTATCACCCCTGCGGTCTTAGACCAGTTG
AATGTGGCTCAGGAGGCCGAGTCCAACAAGACAGCTTTGGACGCGTTGGG
AGGCCTGTCAGGCCTTGCCAAGGAACTAGAAGTGGATCTGAAGCATGGAC
TTAAGGACCGCCAAGTTTCAGAGCTGCGGGCGCGCTTTGGAGCGAATTCC
TTCCCCGAAGCCCCTATAGCGTCATGGCTGGAGTTGTTTGTGAATGCCCT
TAAGGATCCGATCATCGTCGTTCTCATTTTCGCTTGTATCATCTCTTTGG
TGGTAGGACTCATCGAAGACCCTCACGACGGGTGGATAGAGGGGACGGCC
ATCATGGTCGCTATCATGATAGTCGCCACAGTCACTGCCTCTAACAACTA
CAACAAAGAGCTACAGTTTCGGAGCCTGGAAGCCACATCCAAGAAAGACG
AGCGGGTTTTTATCAAACGCAGCGGGGCGCTCCACTTCGTGAATCCAGAA
GAGATCGTGGTGGGGGACCTGATCAAGCTGAAGGCCGGGGACGGCATTCC
CGCTGACGGCATACTGGTGGATGGCGACGGCGTCAAGGTCAATGAGTCAT
CCCTAACAGGCGAGCCTGAAGACCTTCTGAAAAAGGTGGACAAGGATCCC
TTTCTGCTTTCCTCCTCGCTCCTCACAGATCAAGGCAGCAGCCCCGAGAT
ATTTATATTCGTCATTGCTGTTGGCCCCAGATCGCAGTGGGGAAAGATCC
GAGCCAACCTTGTGCAAGACTCCACGCCAACACCCTTGCAGGAAAAGCTG
GAGCATGCTGCTACCGTCATCGGCAAGGTAGGGACGTTCGTTTCGGTCGC
CACTTTCCTGGCGCTTGTGGTGATGATCTTCAAGCCGCCTGGGCAGCCCG
CACGGCACCCTGATGGGCAGAAGATCACGTCTGAGCTCATTAACGCCTTC
ATCATCGCCGTCACAATCATCGTGGTGGCCATACCCGAGGGCCTACCCTT
GGCAGTTACCATATCCTTGGCATACTCGACCAGGAAGATGTACAAAGACC
AAAATCTCATCCGCGTCTTGGCGGCGTGCGAGACGATGGGCAACGCCACG
AACATATGTTCCGACAAAACCGGGACTCTCACGGAGAATCGCATGACGGT
GGTTGAGCTTTGGGCGGGCGGACAAGTGTATATGGACATGAAGGCTGCGG
GCAGCGAATTGAAGCCGAAGCTGAAGAGCATGATTTCGATCAACGTGGCG
GTTAACTCCTCCGCAAATGTGCTTTTTAAGGCCGAGGATGGCACGGTTCT
TGCCCGCCCTAAGATCGTGGGAAGCGCCACAGAGGGTGCTCTGCTGCTTA
TGATACATGCTTGGGGCTTGCATTTCACGCATCTGAAAGACCGCCACTTC
CATAAGGCGACAGATCGGGTCTTCCCTTTCAATTCGGGGAAGAAGCGGGC
CACAGCGTTGATACATAAAAAAAATGGGGGATTGCGCGTGCTAGTAAAGG
GTGCCACGGAGTGGGTGCTTAATGACTGCACGGCGTACACTTTGTCTGAC
GGCGCTACCATGCCGATGACTCCTGAAGTTCGCGCACAGATTGACGCCCA
CGTCCTTTCTATGGCCAACCGGGCTCTCCGGACACTTTGCATCGCACACC
GAGATTTTCCACCGGGGGAAGCACTGCCGGCGGACTGGGAGGATGTGCCG
CCTGACCATGAAAACCTGGTCTGTGACGGCATCGTGGGCATCATCGACCC
TCTGCGGGAGGATGTCAAAGACGCTGTGAAGACGGCGCAGAAGGCAGGGG
TGATGGTGCGAATGATAACAGGAGACAACATCCATACAGCCCAGGCCATT
GCGCGGGATTGTGGGATTTTGACGCCAGGAGGCCTGGCGATTGAGGGTCC
TGTCTTTCGTAATTTAACTCCAGCGCAACTCGACGAGCTTCTGCCCCGGA
TTCAAGTCATGGCCCGGTCGTCGCCCGAGGACAAGTATCTGATGGTGACG
CGCTTGAACGGGGCAAACCTCCCCAAGGACAAAGCCTCGTGGGAAGAGAA
GCACCCAGGTCGGGACTGGGAGGAGGAGAAAGACCTGCTTCTCCCCGGGT
ACTACCAGGAGTGGAACGCATCGCGCGGCAGCGACGGGGGCCACGTTGTG
GGCGTGACGGGGGATGGGACCAATGATGCCCCGGCACTCAAAGCGGCGGA
TGTGGGTCTGAGCATGGGCATCACGGGCACGCAAGTGGCCAAGAACGCCT
CAGACATTGTTATATTGGACGACAAATTCTCTTCCATCGTCAAGGCCATC
ATGTGGGGTCGCGCTGTCTACGACAACATCCGCAAGTTTTTGCAGTATCA
AATGACAGTCAATTTGGCGGCGCTCATCCTCACCTTCTTTGGTGCCGTGA
CGGGAATGGGCACGCCGCTTAATGCAGTTATGATGCTGTGGATCAACCTG
ATCATGGACACGATGGGCGCGCTGGCTCTAGGGACGGAGGAGCCGACTGC
GGCGCTATTGAATCGTCGGCCGTACAAGCGCTCAGCCAACTTGTTCTCGC
GACTAATGGTGCGAAACGTCGTCGGTCAGGTCGTCTTTCAGCTCGGAATA
CTCTTCTTTGTGCTTTACCGGGGCCCTTCGCTTTGGGGAGTAGAGGACGG
CAATTATTGCAGGTCGTGGACTGCCGCCAGCAGTCGCACGGACGTGACCT
GGGAGTTCAATGGCGTAGGGTACACTTGCGCGGACTTCCAGTTAGTCTGC
GCCGAGTACTTTGGGGGGCAGTCGACGGGCGAGTGCTACAGTGAGATGCT
TAAATATTGGACAACTCCCTCCAGGTTTGAGTCTACTTGCGACCTGCGCT
GCGACGCCTTCGACTTCACGCACTACACCTTCATCTTCACGTCTTTCGTC
ATGTGCCAGGCCTTCAACGAGTTCAATGCGCGTGAACTCTTCAATAACTA
CAACGTTTTCAGGGGCCTTACCCGCAACCCTATATTTCTGGTCATCCTAA
CCGTGATCGTTTGCCTTCAAATTATAATCGTTGAGTTCGGCGGGAAGTTT
GTGAGGACCACACCTTTGCCCCTTGAGCTGTGGGCCTGGTCCTTTCTATT
CGGATTCCTCTCGCTCCCCGTCGGTCTCTTGCTAAAAATTTGTATCCCCC
TTAAGGAGTCGCCTGAGACTTTCTTCGGCTACTTGTTGCCGGACAAGAAC
GAACCCCTGCCGCCGGAGCTATCGAAGCTGGTCATAAGCTCTGAGGACAC
GACCGACGCCGACATGAGCGATGTCTCCCCCCCTATCGCTCGTGTGCACA
ACGACACCCATGTATGAGGTTCACATGCCTGGATTAAAGCTCACTTGAGA
TAGTGAAATGGGGGTGGAAGTCTTCGTTCTCGGCCGCCACGGGAGGGAGA
CGGACCGGGTATTCTGTGCATATGGGCGTGCACCAAATCACCACGTTCAA
ACGCCAGGTGGAGCTTTCCGCCTGCGCTCAATCATCTGTCTCCGTTTTTC
TTTGTGGTGGTGCTCAATGGTGGAGAGCGAATAGTTTGTGAGGTGGACAA
GTTGAGAGGCGCAAGGGAGTGGGGAGACCACGGCGGTGAGACTGTGCTCG
TCTGAGATCGGTAAAGCGTTTTTCGGCTGATAAGGCCAATGACTGGATGT
ACGTCCCTTCTTGTATGAAAGAATAGAGGTAAAAAGAATGTTGTGCGAGA back to topprotein sequence of rna326 >rna326-protein ID=rna326-protein|Name=rna326|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNL
EFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTF
GGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANL
MTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGP
GAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL back to topmRNA from alignment at CM002455.1:809323..810652- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna326 ID=rna326|Name=rna326|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp|location=Sequence derived from alignment at CM002455.1:809323..810652- (Nannochloropsis gaditana)
ATGTTTGGGACAAGCTTGAAAACATCTTTACTTGTAAAGCGTTTGAAGCA
GGTGACAGTCAAGGTCGAGAAAAAAAAAGTTACCACTGCAGCATCATGAG
CCTCTATGGACGACAAGGCTAGATAAAAGTTCTTTAATAATGTTGGATTC
GACGAAAAAAATCGTGTAAAAAAAATGATTTGCGTCGGTGAACGATTGTA
GTCTGGTATTAAGCGGCGGTGCCTCTCGTAGTCCCAGACTTTTTCTGCTT
CATCAGGACTCGACCTCCCTCTCTTCGCCAGACCATGCCGTCGCCGCCTC
CCCAAGGCCTGCGAGCCCAAACCGAGGTTGCCAAACATTTCTATGGTCAA
AATTCTCAGTGCTGTTCCTGTCGTTTCATGTCGTTGATCGGCTTCGCCCT
GCTGTGTGTCTCCCGCCGCTTCGTCTGCACAGTGGGTGCGAATTATTGAA
GGCTGCGACCCAGGTGCAGTGATCTGCCCGCTCCTCCGTGACAGCGATGG
CTAAAGAAAAATCGCAATGACTGAATGAAAACTTCCATATTCGTGACTTA
TGACCCTGACACCCCAAATGTCATATTCAGGCATGAACTTTGACTTCGAG
CACGAGGACGCCTCGAACTTGGAGTTCGGAAAGGCTCTAACAGGAAACGC
CCCCGTCCTCTTCAATGCCGAGGTGGCCGTACTGCTTGAGAACCGGCGGA
AAGAGTATGAAGAAAAGGGTCTTCGCGTCCCCGAGTAAGTCTCTTTGCTG
ATTCCTCCCAAAGTGTCGACCGTCGGGTGTGTGCGCTCAAACATCCTATC
GATCCCGACAGGGCTTTGACTCTCACGCTAGAATACTGCAAGACTTTTGG
GGGTGTCAAGCCAGCGGACGATGAGGGGACAAACCAGTATCTGACTAATC
TGCGACAGGTCTTAGAGCAGTGGGAGTTTGGAGACTCAGAGGACGTTCCG
TACAAAAAAAGCTTACATCCTTTCGAGGTGGCGGCGCTGGCCAACTTAAT
GACGACTTCCTCAGATCGCGACGAGGCTTGTAAGTAAGTGAAGGGCATTC
GAGCGTTACTGCTCTATTCATCACTTTTTACTCTTTCCGCCCATATTCTC
TCTTAGGCGCTCTCATTCCTAGCCTGCGAAGAACAGATAAGTTAGGGGAC
CGGTTCACGGAGGACCAAATCGACGCCATTTTGGAGAACTTTCAGAACGT
GCTCCTGGGTTTGCAGCAGGGTCCGGGTGCTGGTGGCGGGGATGCCGTTG
GACACGAAATGGATGGAATGGGCGAAGGAGAGGAAGATGTGGTTGACTCC
AGCGGAATTCAAGAAGACGATGATTTATAA back to topCoding sequence (CDS) from alignment at CM002455.1:809323..810652- >rna326 ID=rna326|Name=rna326|organism=Nannochloropsis gaditana|type=CDS|length=3525bp|location=Sequence derived from alignment at CM002455.1:809323..810652- (Nannochloropsis gaditana)
GCGCTCTCATTCCTAGCCTGCGAAGAACAGATAAGTTAGGGGACCGGTTC
ACGGAGGACCAAATCGACGCCATTTTGGAGAACTTTCAGAACGTGCTCCT
GGGTTTGCAGCAGGGTCCGGGTGCTGGTGGCGGGGATGCCGTTGGACACG
AAATGGATGGAATGGGCGAAGGAGAGGAAGATGTGGTTGACTCCAGCGGA
ATTCAAGAAGACGATGATTTATAAGGCTTTGACTCTCACGCTAGAATACT
GCAAGACTTTTGGGGGTGTCAAGCCAGCGGACGATGAGGGGACAAACCAG
TATCTGACTAATCTGCGACAGGTCTTAGAGCAGTGGGAGTTTGGAGACTC
AGAGGACGTTCCGTACAAAAAAAGCTTACATCCTTTCGAGGTGGCGGCGC
TGGCCAACTTAATGACGACTTCCTCAGATCGCGACGAGGCTTGCATGAAC
TTTGACTTCGAGCACGAGGACGCCTCGAACTTGGAGTTCGGAAAGGCTCT
AACAGGAAACGCCCCCGTCCTCTTCAATGCCGAGGTGGCCGTACTGCTTG
AGAACCGGCGGAAAGAGTATGAAGAAAAGGGTCTTCGCGTCCCCGATGGG
TGCGAATTATTGAAGGCTGCGACCCAGATGTTTGGGACAAGCTTGAAAAC
ATCTTTACTTGTAAAGCGTTTGAAGCAGGTGACAGTCAAGGTCGAGAAAA
AAAAAGCGCTCTCATTCCTAGCCTGCGAAGAACAGATAAGTTAGGGGACC
GGTTCACGGAGGACCAAATCGACGCCATTTTGGAGAACTTTCAGAACGTG
CTCCTGGGTTTGCAGCAGGGTCCGGGTGCTGGTGGCGGGGATGCCGTTGG
ACACGAAATGGATGGAATGGGCGAAGGAGAGGAAGATGTGGTTGACTCCA
GCGGAATTCAAGAAGACGATGATTTATAAGGCTTTGACTCTCACGCTAGA
ATACTGCAAGACTTTTGGGGGTGTCAAGCCAGCGGACGATGAGGGGACAA
ACCAGTATCTGACTAATCTGCGACAGGTCTTAGAGCAGTGGGAGTTTGGA
GACTCAGAGGACGTTCCGTACAAAAAAAGCTTACATCCTTTCGAGGTGGC
GGCGCTGGCCAACTTAATGACGACTTCCTCAGATCGCGACGAGGCTTGCA
TGAACTTTGACTTCGAGCACGAGGACGCCTCGAACTTGGAGTTCGGAAAG
GCTCTAACAGGAAACGCCCCCGTCCTCTTCAATGCCGAGGTGGCCGTACT
GCTTGAGAACCGGCGGAAAGAGTATGAAGAAAAGGGTCTTCGCGTCCCCG
ATGGGTGCGAATTATTGAAGGCTGCGACCCAGATGTTTGGGACAAGCTTG
AAAACATCTTTACTTGTAAAGCGTTTGAAGCAGGTGACAGTCAAGGTCGA
GAAAAAAAAAGCGCTCTCATTCCTAGCCTGCGAAGAACAGATAAGTTAGG
GGACCGGTTCACGGAGGACCAAATCGACGCCATTTTGGAGAACTTTCAGA
ACGTGCTCCTGGGTTTGCAGCAGGGTCCGGGTGCTGGTGGCGGGGATGCC
GTTGGACACGAAATGGATGGAATGGGCGAAGGAGAGGAAGATGTGGTTGA
CTCCAGCGGAATTCAAGAAGACGATGATTTATAAGGCTTTGACTCTCACG
CTAGAATACTGCAAGACTTTTGGGGGTGTCAAGCCAGCGGACGATGAGGG
GACAAACCAGTATCTGACTAATCTGCGACAGGTCTTAGAGCAGTGGGAGT
TTGGAGACTCAGAGGACGTTCCGTACAAAAAAAGCTTACATCCTTTCGAG
GTGGCGGCGCTGGCCAACTTAATGACGACTTCCTCAGATCGCGACGAGGC
TTGCATGAACTTTGACTTCGAGCACGAGGACGCCTCGAACTTGGAGTTCG
GAAAGGCTCTAACAGGAAACGCCCCCGTCCTCTTCAATGCCGAGGTGGCC
GTACTGCTTGAGAACCGGCGGAAAGAGTATGAAGAAAAGGGTCTTCGCGT
CCCCGATGGGTGCGAATTATTGAAGGCTGCGACCCAGATGTTTGGGACAA
GCTTGAAAACATCTTTACTTGTAAAGCGTTTGAAGCAGGTGACAGTCAAG
GTCGAGAAAAAAAAAGCGCTCTCATTCCTAGCCTGCGAAGAACAGATAAG
TTAGGGGACCGGTTCACGGAGGACCAAATCGACGCCATTTTGGAGAACTT
TCAGAACGTGCTCCTGGGTTTGCAGCAGGGTCCGGGTGCTGGTGGCGGGG
ATGCCGTTGGACACGAAATGGATGGAATGGGCGAAGGAGAGGAAGATGTG
GTTGACTCCAGCGGAATTCAAGAAGACGATGATTTATAAGGCTTTGACTC
TCACGCTAGAATACTGCAAGACTTTTGGGGGTGTCAAGCCAGCGGACGAT
GAGGGGACAAACCAGTATCTGACTAATCTGCGACAGGTCTTAGAGCAGTG
GGAGTTTGGAGACTCAGAGGACGTTCCGTACAAAAAAAGCTTACATCCTT
TCGAGGTGGCGGCGCTGGCCAACTTAATGACGACTTCCTCAGATCGCGAC
GAGGCTTGCATGAACTTTGACTTCGAGCACGAGGACGCCTCGAACTTGGA
GTTCGGAAAGGCTCTAACAGGAAACGCCCCCGTCCTCTTCAATGCCGAGG
TGGCCGTACTGCTTGAGAACCGGCGGAAAGAGTATGAAGAAAAGGGTCTT
CGCGTCCCCGATGGGTGCGAATTATTGAAGGCTGCGACCCAGATGTTTGG
GACAAGCTTGAAAACATCTTTACTTGTAAAGCGTTTGAAGCAGGTGACAG
TCAAGGTCGAGAAAAAAAAAGCGCTCTCATTCCTAGCCTGCGAAGAACAG
ATAAGTTAGGGGACCGGTTCACGGAGGACCAAATCGACGCCATTTTGGAG
AACTTTCAGAACGTGCTCCTGGGTTTGCAGCAGGGTCCGGGTGCTGGTGG
CGGGGATGCCGTTGGACACGAAATGGATGGAATGGGCGAAGGAGAGGAAG
ATGTGGTTGACTCCAGCGGAATTCAAGAAGACGATGATTTATAAGGCTTT
GACTCTCACGCTAGAATACTGCAAGACTTTTGGGGGTGTCAAGCCAGCGG
ACGATGAGGGGACAAACCAGTATCTGACTAATCTGCGACAGGTCTTAGAG
CAGTGGGAGTTTGGAGACTCAGAGGACGTTCCGTACAAAAAAAGCTTACA
TCCTTTCGAGGTGGCGGCGCTGGCCAACTTAATGACGACTTCCTCAGATC
GCGACGAGGCTTGCATGAACTTTGACTTCGAGCACGAGGACGCCTCGAAC
TTGGAGTTCGGAAAGGCTCTAACAGGAAACGCCCCCGTCCTCTTCAATGC
CGAGGTGGCCGTACTGCTTGAGAACCGGCGGAAAGAGTATGAAGAAAAGG
GTCTTCGCGTCCCCGATGGGTGCGAATTATTGAAGGCTGCGACCCAGATG
TTTGGGACAAGCTTGAAAACATCTTTACTTGTAAAGCGTTTGAAGCAGGT
GACAGTCAAGGTCGAGAAAAAAAAA back to top
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