EWM30317.1, cds326 (CDS) Nannochloropsis gaditana

Overview
NameEWM30317.1
Unique Namecds326
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:810575..810652 -
Alignment locationCM002455.1:810190..810220 -
Alignment locationCM002455.1:809919..810072 -
Alignment locationCM002455.1:809624..809841 -
Alignment locationCM002455.1:809323..809546 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30317.1
Productdna-directed rna polymerase ii subunit rpb4
Orig transcript idgnl|cribi|Naga_100003g170.1834.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:810575..810652 -
CM002455.1supercontigCM002455.1:810190..810220 -
CM002455.1supercontigCM002455.1:809919..810072 -
CM002455.1supercontigCM002455.1:809624..809841 -
CM002455.1supercontigCM002455.1:809323..809546 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0044237cellular metabolic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like
IPR005574RNA_pol_II_Rpb4
IPR006590RNA_pol_II_Rpb4_core
Homology
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|585112976|gb|EWM30317.1| (dna-directed rna polymerase ii subunit rpb4 [Nannochloropsis gaditana])

HSP 1 Score: 479.174 bits (1232), Expect = 3.569e-171
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGPGAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL 234
            MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGPGAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL
Sbjct:    1 MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGPGAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL 234          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|298709441|emb|CBJ31347.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 1.457e-15
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 0
Query:   45 EDASNLEFG-KALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWE-FGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            E+A+ L+FG +    +   L NAEV+V+LE +R  YEEK + V  A + T+ Y K FGG+  +         + LR+ L+Q+E F + E +     LH FE+  +ANLM   S+ +E  ALIPS      LG R TE+ ++ IL
Sbjct:    8 ENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT---SELREALQQFETFHEGESI----RLHQFEIMQVANLMQADSEVEEVLALIPS------LGARLTEEDLENIL 138          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|669165702|ref|XP_008618413.1| (hypothetical protein SDRG_14087 [Saprolegnia diclina VS20] >gi|813127123|ref|XP_012197245.1| hypothetical protein SPRG_03275 [Saprolegnia parasitica CBS 223.65] >gi|530729885|gb|EQC28127.1| hypothetical protein SDRG_14087 [Saprolegnia diclina VS20] >gi|641538223|gb|KDO32057.1| hypothetical protein SPRG_03275 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.559 bits (179), Expect = 9.791e-13
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 0
Query:   37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQ-YLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            G N   + EDA+ L  G+   G    L NAEVAV+LE ++ +YE +   +      T  Y + F G K   D  +NQ  +T LR+ L  +EF  +  D P +     L  FE+A L+NL     + +EA ALIPSL++      RFTED I+ IL
Sbjct:    5 GRNHAIDTEDAAELILGEDFQGET-CLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTK---DPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQK------RFTEDDIEEIL 147          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|1173941850|gb|OQR90938.1| (hypothetical protein THRCLA_09145 [Thraustotheca clavata])

HSP 1 Score: 72.4034 bits (176), Expect = 1.998e-12
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 0
Query:   42 FEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQ-YLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            F+ EDA+ L  G+        L NAEVAV+LE ++ +YE +   +      T  Y + F G K   D  +NQ  +T LR+ L  +EF  ++ D P K     L  FE+A L+NL     + +EA ALIPSL++      RFTED I+ IL
Sbjct:    8 FDTEDAAELILGQDFQTET-CLSNAEVAVILEKQKSDYESQEKTLTSVFQKTYSYVQRFSGTK---DPVSNQASVTELREALITYEFTREAPDDPSKTIEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQK------RFTEDDIEEIL 145          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|313219963|emb|CBY43664.1| (unnamed protein product [Oikopleura dioica] >gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica])

HSP 1 Score: 71.633 bits (174), Expect = 2.362e-12
Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0
Query:   37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEK--GLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSL 167
              N DF+ EDA+ L+F K        L N+EV VLLE+R K  E +   + + E    TL+YCK F   K  D       + N+R +L              K LH FE+AALANL   ++  DEA ALIPS+
Sbjct:    2 SQNIDFDEEDAAQLQFPKEF-QETTTLMNSEVKVLLEHRMKNDEGRRDDVELSEVFQKTLDYCKRFSKFKNQD------VIVNVRTML------------TSKRLHRFEIAALANLCPETA--DEAKALIPSM 113          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|1173945457|gb|OQR94079.1| (hypothetical protein ACHHYP_01849 [Achlya hypogyna])

HSP 1 Score: 71.633 bits (174), Expect = 3.966e-12
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 0
Query:   37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            G N   + EDA+ L  G+   G    L NAEVAV+LE ++ +YE +   +      T  Y + F G K P  ++ +   +T LR+ L  +EF  +  D P +     L  FE+A L+NL     + +EA ALIPSL++      RFTE+ I+ IL
Sbjct:    5 GRNHAIDTEDAAELILGEDFQGET-CLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQAS---VTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQK------RFTEEDIEEIL 147          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|301118222|ref|XP_002906839.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|675179739|ref|XP_008898754.1| hypothetical protein PPTG_06558 [Phytophthora parasitica INRA-310] >gi|262108188|gb|EEY66240.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|566008239|gb|ETI31150.1| hypothetical protein F443_21865 [Phytophthora parasitica P1569] >gi|567945721|gb|ETK71532.1| hypothetical protein L915_21258 [Phytophthora parasitica] >gi|567974381|gb|ETL24976.1| hypothetical protein L916_21125 [Phytophthora parasitica] >gi|568003850|gb|ETL78191.1| hypothetical protein L917_20983 [Phytophthora parasitica] >gi|568033760|gb|ETM31454.1| hypothetical protein L914_21000 [Phytophthora parasitica] >gi|568101740|gb|ETN16426.1| hypothetical protein PPTG_06558 [Phytophthora parasitica INRA-310] >gi|570311917|gb|ETO59865.1| hypothetical protein F444_21887 [Phytophthora parasitica P1976] >gi|570935712|gb|ETP00969.1| hypothetical protein F441_21747 [Phytophthora parasitica CJ01A1] >gi|570965986|gb|ETP29105.1| hypothetical protein F442_21725 [Phytophthora parasitica P10297] >gi|970644930|gb|KUF85577.1| DNA-directed RNA polymerase II subunit RPB4 [Phytophthora nicotianae] >gi|970656461|gb|KUF94470.1| hypothetical protein AM588_10005990 [Phytophthora nicotianae])

HSP 1 Score: 71.2478 bits (173), Expect = 6.557e-12
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 0
Query:   45 EDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEF---GDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            EDA+ L  G     N   L NAEVAV+LE ++ +YE +  ++      T  Y + F G K P  ++ +   +T LR+ L    F    D E V Y+  L  FE+A L+NL     + +EA ALIPSL +      RF ED+I+ IL
Sbjct:   12 EDAAELNLGDDFR-NETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQAS---VTELREALMSLAFQREADGETVEYR--LEEFEIACLSNL--NPEEVEEAVALIPSLHK------RFAEDEIEEIL 143          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|695377269|ref|XP_009515972.1| (hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae] >gi|348688883|gb|EGZ28697.1| hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae])

HSP 1 Score: 70.0922 bits (170), Expect = 1.424e-11
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 0
Query:   45 EDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEFGDSED---VPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            EDA+ L  G     N   L NAEVAV+LE ++ +YE +  ++      T  Y + F G K P  ++ +   +T LR+ L    F   ED   V Y+  L  FE+A L+NL     + +EA ALIPSL +      RF ED+I+ IL
Sbjct:   12 EDAAELNLGDDFR-NETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQAS---VTELREALMSLAFQREEDGETVEYR--LEEFEIACLSNL--NPEEVEEAVALIPSLHK------RFAEDEIEEIL 143          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|953488798|emb|CEG47664.1| (dna-directed rna polymerase ii subunit rpb4-like [Plasmopara halstedii])

HSP 1 Score: 69.707 bits (169), Expect = 2.175e-11
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 0
Query:   45 EDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEFGDSED---VPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
            EDA+ L  G     N   L NAEVAV+LE ++ +YE +  ++      T  Y + F G K P  ++ +   +T LR+ L    F   ED   + Y+  L  FE+A L+NL  +  + +EA ALIPSL++      RF ED+I+ IL
Sbjct:   12 EDAAELNLGDDFR-NETCLSNAEVAVILEKQKSDYETQEKQLTNVFRKTYSYVQRFSGTKDPVMNQAS---VTELREALMSLVFQREEDSGTIEYR--LEEFEIACLSNL--SPEEVEEAVALIPSLQK------RFAEDEIEEIL 143          
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|673045505|ref|XP_008876713.1| (hypothetical protein H310_11724 [Aphanomyces invadans] >gi|574467746|gb|ETV94768.1| hypothetical protein H310_11724 [Aphanomyces invadans])

HSP 1 Score: 67.781 bits (164), Expect = 1.168e-10
Identity = 54/155 (34.84%), Postives = 76/155 (49.03%), Query Frame = 0
Query:   37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILE 187
            G     + EDA+ L  G+        L NAEVAV+LE ++ +YE     +      T  Y + F G K  D       +T LR+ L  +EF  +S D P +     L  FE+A L+NL     + +EA ALIPSL +      +FTE+ ID IL+
Sbjct:    7 GRQHAMDTEDAAELNLGEDFQQET-CLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTK--DPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNL--NPEEPEEAMALIPSLNK------KFTEEDIDEILQ 150          
The following BLAST results are available for this feature:
BLAST of EWM30317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112976|gb|EWM30317.1|3.569e-171100.00dna-directed rna polymerase ii subunit rpb4 [Nanno... [more]
gi|298709441|emb|CBJ31347.1|1.457e-1538.19conserved unknown protein [Ectocarpus siliculosus][more]
gi|669165702|ref|XP_008618413.1|9.791e-1337.42hypothetical protein SDRG_14087 [Saprolegnia dicli... [more]
gi|1173941850|gb|OQR90938.1|1.998e-1238.00hypothetical protein THRCLA_09145 [Thraustotheca c... [more]
gi|313219963|emb|CBY43664.1|2.362e-1238.35unnamed protein product [Oikopleura dioica] >gi|31... [more]
gi|1173945457|gb|OQR94079.1|3.966e-1235.48hypothetical protein ACHHYP_01849 [Achlya hypogyna... [more]
gi|301118222|ref|XP_002906839.1|6.557e-1236.99conserved hypothetical protein [Phytophthora infes... [more]
gi|695377269|ref|XP_009515972.1|1.424e-1136.99hypothetical protein PHYSODRAFT_552395 [Phytophtho... [more]
gi|953488798|emb|CEG47664.1|2.175e-1136.30dna-directed rna polymerase ii subunit rpb4-like [... [more]
gi|673045505|ref|XP_008876713.1|1.168e-1034.84hypothetical protein H310_11724 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna326rna326Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications