EWM30317.1, cds326 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|585112976|gb|EWM30317.1| (dna-directed rna polymerase ii subunit rpb4 [Nannochloropsis gaditana]) HSP 1 Score: 479.174 bits (1232), Expect = 3.569e-171 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query: 1 MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGPGAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL 234
MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGPGAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL
Sbjct: 1 MFGTSLKTSLLVKRLKQVTVKVEKKKWVRIIEGCDPGMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILENFQNVLLGLQQGPGAGGGDAVGHEMDGMGEGEEDVVDSSGIQEDDDL 234
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|298709441|emb|CBJ31347.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.8777 bits (198), Expect = 1.457e-15 Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 0
Query: 45 EDASNLEFG-KALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWE-FGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
E+A+ L+FG + + L NAEV+V+LE +R YEEK + V A + T+ Y K FGG+ + + LR+ L+Q+E F + E + LH FE+ +ANLM S+ +E ALIPS LG R TE+ ++ IL
Sbjct: 8 ENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT---SELREALQQFETFHEGESI----RLHQFEIMQVANLMQADSEVEEVLALIPS------LGARLTEEDLENIL 138
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|669165702|ref|XP_008618413.1| (hypothetical protein SDRG_14087 [Saprolegnia diclina VS20] >gi|813127123|ref|XP_012197245.1| hypothetical protein SPRG_03275 [Saprolegnia parasitica CBS 223.65] >gi|530729885|gb|EQC28127.1| hypothetical protein SDRG_14087 [Saprolegnia diclina VS20] >gi|641538223|gb|KDO32057.1| hypothetical protein SPRG_03275 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 73.559 bits (179), Expect = 9.791e-13 Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 0
Query: 37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQ-YLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
G N + EDA+ L G+ G L NAEVAV+LE ++ +YE + + T Y + F G K D +NQ +T LR+ L +EF + D P + L FE+A L+NL + +EA ALIPSL++ RFTED I+ IL
Sbjct: 5 GRNHAIDTEDAAELILGEDFQGET-CLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTK---DPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQK------RFTEDDIEEIL 147
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|1173941850|gb|OQR90938.1| (hypothetical protein THRCLA_09145 [Thraustotheca clavata]) HSP 1 Score: 72.4034 bits (176), Expect = 1.998e-12 Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 0
Query: 42 FEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQ-YLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
F+ EDA+ L G+ L NAEVAV+LE ++ +YE + + T Y + F G K D +NQ +T LR+ L +EF ++ D P K L FE+A L+NL + +EA ALIPSL++ RFTED I+ IL
Sbjct: 8 FDTEDAAELILGQDFQTET-CLSNAEVAVILEKQKSDYESQEKTLTSVFQKTYSYVQRFSGTK---DPVSNQASVTELREALITYEFTREAPDDPSKTIEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQK------RFTEDDIEEIL 145
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|313219963|emb|CBY43664.1| (unnamed protein product [Oikopleura dioica] >gi|313232607|emb|CBY19277.1| unnamed protein product [Oikopleura dioica]) HSP 1 Score: 71.633 bits (174), Expect = 2.362e-12 Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0
Query: 37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEK--GLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFGDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSL 167
N DF+ EDA+ L+F K L N+EV VLLE+R K E + + + E TL+YCK F K D + N+R +L K LH FE+AALANL ++ DEA ALIPS+
Sbjct: 2 SQNIDFDEEDAAQLQFPKEF-QETTTLMNSEVKVLLEHRMKNDEGRRDDVELSEVFQKTLDYCKRFSKFKNQD------VIVNVRTML------------TSKRLHRFEIAALANLCPETA--DEAKALIPSM 113
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|1173945457|gb|OQR94079.1| (hypothetical protein ACHHYP_01849 [Achlya hypogyna]) HSP 1 Score: 71.633 bits (174), Expect = 3.966e-12 Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 0
Query: 37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
G N + EDA+ L G+ G L NAEVAV+LE ++ +YE + + T Y + F G K P ++ + +T LR+ L +EF + D P + L FE+A L+NL + +EA ALIPSL++ RFTE+ I+ IL
Sbjct: 5 GRNHAIDTEDAAELILGEDFQGET-CLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQAS---VTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQK------RFTEEDIEEIL 147
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|301118222|ref|XP_002906839.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|675179739|ref|XP_008898754.1| hypothetical protein PPTG_06558 [Phytophthora parasitica INRA-310] >gi|262108188|gb|EEY66240.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|566008239|gb|ETI31150.1| hypothetical protein F443_21865 [Phytophthora parasitica P1569] >gi|567945721|gb|ETK71532.1| hypothetical protein L915_21258 [Phytophthora parasitica] >gi|567974381|gb|ETL24976.1| hypothetical protein L916_21125 [Phytophthora parasitica] >gi|568003850|gb|ETL78191.1| hypothetical protein L917_20983 [Phytophthora parasitica] >gi|568033760|gb|ETM31454.1| hypothetical protein L914_21000 [Phytophthora parasitica] >gi|568101740|gb|ETN16426.1| hypothetical protein PPTG_06558 [Phytophthora parasitica INRA-310] >gi|570311917|gb|ETO59865.1| hypothetical protein F444_21887 [Phytophthora parasitica P1976] >gi|570935712|gb|ETP00969.1| hypothetical protein F441_21747 [Phytophthora parasitica CJ01A1] >gi|570965986|gb|ETP29105.1| hypothetical protein F442_21725 [Phytophthora parasitica P10297] >gi|970644930|gb|KUF85577.1| DNA-directed RNA polymerase II subunit RPB4 [Phytophthora nicotianae] >gi|970656461|gb|KUF94470.1| hypothetical protein AM588_10005990 [Phytophthora nicotianae]) HSP 1 Score: 71.2478 bits (173), Expect = 6.557e-12 Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 0
Query: 45 EDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEF---GDSEDVPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
EDA+ L G N L NAEVAV+LE ++ +YE + ++ T Y + F G K P ++ + +T LR+ L F D E V Y+ L FE+A L+NL + +EA ALIPSL + RF ED+I+ IL
Sbjct: 12 EDAAELNLGDDFR-NETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQAS---VTELREALMSLAFQREADGETVEYR--LEEFEIACLSNL--NPEEVEEAVALIPSLHK------RFAEDEIEEIL 143
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|695377269|ref|XP_009515972.1| (hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae] >gi|348688883|gb|EGZ28697.1| hypothetical protein PHYSODRAFT_552395 [Phytophthora sojae]) HSP 1 Score: 70.0922 bits (170), Expect = 1.424e-11 Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 0
Query: 45 EDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEFGDSED---VPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
EDA+ L G N L NAEVAV+LE ++ +YE + ++ T Y + F G K P ++ + +T LR+ L F ED V Y+ L FE+A L+NL + +EA ALIPSL + RF ED+I+ IL
Sbjct: 12 EDAAELNLGDDFR-NETCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQAS---VTELREALMSLAFQREEDGETVEYR--LEEFEIACLSNL--NPEEVEEAVALIPSLHK------RFAEDEIEEIL 143
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|953488798|emb|CEG47664.1| (dna-directed rna polymerase ii subunit rpb4-like [Plasmopara halstedii]) HSP 1 Score: 69.707 bits (169), Expect = 2.175e-11 Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 0
Query: 45 EDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVK-PADDEGTNQYLTNLRQVLEQWEFGDSED---VPYKKSLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAIL 186
EDA+ L G N L NAEVAV+LE ++ +YE + ++ T Y + F G K P ++ + +T LR+ L F ED + Y+ L FE+A L+NL + + +EA ALIPSL++ RF ED+I+ IL
Sbjct: 12 EDAAELNLGDDFR-NETCLSNAEVAVILEKQKSDYETQEKQLTNVFRKTYSYVQRFSGTKDPVMNQAS---VTELREALMSLVFQREEDSGTIEYR--LEEFEIACLSNL--SPEEVEEAVALIPSLQK------RFAEDEIEEIL 143
BLAST of EWM30317.1 vs. NCBI_GenBank
Match: gi|673045505|ref|XP_008876713.1| (hypothetical protein H310_11724 [Aphanomyces invadans] >gi|574467746|gb|ETV94768.1| hypothetical protein H310_11724 [Aphanomyces invadans]) HSP 1 Score: 67.781 bits (164), Expect = 1.168e-10 Identity = 54/155 (34.84%), Postives = 76/155 (49.03%), Query Frame = 0
Query: 37 GMNFDFEHEDASNLEFGKALTGNAPVLFNAEVAVLLENRRKEYEEKGLRVPEALTLTLEYCKTFGGVKPADDEGTNQYLTNLRQVLEQWEFG-DSEDVPYKK---SLHPFEVAALANLMTTSSDRDEACALIPSLRRTDKLGDRFTEDQIDAILE 187
G + EDA+ L G+ L NAEVAV+LE ++ +YE + T Y + F G K D +T LR+ L +EF +S D P + L FE+A L+NL + +EA ALIPSL + +FTE+ ID IL+
Sbjct: 7 GRQHAMDTEDAAELNLGEDFQQET-CLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTK--DPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNL--NPEEPEEAMALIPSLNK------KFTEEDIDEILQ 150 The following BLAST results are available for this feature:
BLAST of EWM30317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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