rna3258, rna3258 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3258
Unique Name	rna3258
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1372
Alignment location	CM002460.1:1137666..1139265 +

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Properties


Property Name	Value
Product	sulfite oxidase
Orig transcript id	gnl\|cribi\|Naga_100899g1.9840.mrna
Orig protein id	gnl\|cribi\|Naga_100899g1.9840
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1137666..1139265 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100899g1	gene3137	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3258	rna3258-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27425.1	cds3249	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1137666..1139265+
coding sequence from alignment at CM002460.1:1137666..1139265+

mRNA sequence

>rna3258 ID=rna3258|Name=rna3258|organism=Nannochloropsis gaditana|type=mRNA|length=1372bp
CGGCACTCCCAGGAATTAGATGTCGCTTTCGTCGCCACTCGATACGACGC
CGTCCTCACATGTGGATGGAGCCCCTCCAGCGTCCATTTTGGGTGTCAAT
GCCGCTAGCCCCCTCCCCCCTGACGAGGCATTGGGAACGGAGGAACTTCC
AGGAGAGAGTTTCCGACACGATTACCTGGCGTCTCAGGGATACGCACCAC
TGATTGACGTGGATGAGGCGGAATACCGTGGAGAGAGGATGTTGCACAGC
GAGGGACGGATGGCGCCCCCTTCCGCGGCGGGGGAAGGGGGGGAGGAGCA
GGAAGAGAGGAGGAAGGAGGAAGAGGAAACGGAGGAGGAGAGGCGGGAGG
TGAATTTTCAGGCCATCAGTGCAAGGATCCTGGAGGAAATGGAAGCGGAG
TATGTCCAAGCGCAGGAGTGGGAGGGAGGAGCACCACACAGGGCGCCGCG
GGCCGAGAAGGCGGTGGGAGGCGAAGGGGAAGAAACAGGCCTTGGAAGCC
CGGAGGACGACACTTGGCATTCGGGACACGCACCGCTCGATGGACAGCAT
CCCGGTCATGCAGGGTGCACGACGACCGAGCCCACTGCCTTTCAGGGGTC
CACGCCGTCGTCGACCGCACCTGCTCTACCTACCGTCCCTCCACCGCGGC
CCCTGCCCCCTTTATCTGCCTCCCAAGAAGAAGAGATCAAGCGCGTGATG
AGCAAGGTCCTGCTTCCTAGAGAAGTCACTCCTGCATGGGCCAAGGGCAT
CGATTGGGAAGGAGCAGGAGTCGCGGAATGTTTGCATATGCTTCAGACCA
GTCTAGACCAAAAGGAGGGGCGAGGGGAGGAGGGAGGGTTCGGAAGACCG
CGGGAATGAATAGAGGAGGAAAGAAATAAAGCTAGGCTTGGAGAAGAAAG
CAAATGCGCAGGAGTGGAGAGATCTCCGGTTCGGTGTTGAATGACTCAGG
CTTAGGCAAGGCACGACCGCACTATTGAAGTCTCGTGTTCCAAACTCATG
CATTATCCATTAATTTTGGCTTTTCTTCATACCGCGAGGTGAAAGAATGG
CATTTTGCTATTTGTGCCGGCAAGATCACAGAAAGAGAACGAATGTAGAC
CTAGAAACGGCTTGCACAAACAGTGAAGAAAAGCTCCGAGCGCATAGCCT
TTTAATACGGGCAATTCCTGTAGCCTACTTCACCCAATTTTCCAGTCCTC
AACTTGTCAGATCAGTAAGGGAGGATACTCGTGCGAAAAGACCCGAACTT
CAATTCTGCTTTGTTTTTGACATGTGAACATGTGGGGCAAGTCTTCGGAC
CCCGCCTTAGAACCTCCAAGAGACGCCGTGTAAGCCGGTTCTCACATCCG
TGTCTACAAGATCATTCGTTGC

protein sequence of rna3258

>rna3258-protein ID=rna3258-protein|Name=rna3258|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MLRHAVVRFPAAFKRINVIRGGCLAQCSPCRSLEIHRHSHARVMTSAAAA
LSSSFQDKRDTGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKE
IEYTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPV
EPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEKEVDLDDPYAHE
PERHPAFKINTLKPFNAEPPGALLVDRRGLLARG

mRNA from alignment at CM002460.1:1137666..1139265+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3258 ID=rna3258|Name=rna3258|organism=Nannochloropsis gaditana|type=mRNA|length=1600bp|location=Sequence derived from alignment at CM002460.1:1137666..1139265+ (Nannochloropsis gaditana)
ATGCTACGTCATGCCGTTGTCCGTTTTCCAGCTGCGTTTAAGCGGATCAA
CGTAATCCGTGGAGGGTGTCTGGCCCAATGCAGCCCTTGCAGGAGCTTGG
AGATCCACCGGCATTCGCACGCCCGAGTCATGACAAGTGCAGCAGCtgcg
ctttcctcttccttccaggATAAACGGGATACTGGCAACACGAGGGCAGT
GGTGCTGCTAGCTTTGTCGTTAATTGCCGGTGTGGGGGGGATAAGAACAG
CGTCCCCCGCCCAGACCGAAGCGGGCGCAACGGACGCAGGCGTGAAAGAG
ATAGAGTACACCAAGGCAGACGTCAAAGCACACAAGACGATCGAAACAGG
CGTATGGGTCACTTACAAAGACGGCGTGTACGACATCACAAAATTTGCGG
AGAACCATCCCGGTAAGCCAGACGCCCTGAGCATAAGGGGTTCAGATTCA
GATCGTGCCTTTCTCACTCTACCGCGGGATAATATACCTTCCTGCCTTCG
GACCCCACGGCAACAGGAGGAAACAAGATTCTCATGGCAGCCGGGGGCCC
GGTTGAACCCTATTGGAATTTGTATGCCGTCCACAAAGATCCTGAGGTGC
GTTCGCCTGACCGTCCCCGGTCCACCGcggcccctctttctcccctcacC
TGGGGGATCTGattgcttttttttctttgatTGCATCTCTGAACCTTTTT
GCTGACACATCTATGCCCATAATCTCCCTCGTCATGcgtgctttccctct
ctctttcctccgtgcGCCTCGTTGtgttcctgccttccccctgccccccc
tgctcGCGTCTCGACATGCCTCGTCCTCTTAACTCTCTCCCCGCATCCCT
CCCCTGACGCTTTTGGCGTCTTCTGATTCGTCACATTCCGGCCTACAGGT
GCAGGAAACCATCAAAGAGATCCTGGGGGAGCTCCGAATCGGAACCTTGA
AGCACAGCCCGGAGGTcagtcccttcctccagccctccagccctcccttc
ctccctttttccctccctcccttcatttcTCAACGACTCTTTATGTCCAT
GAGAGACTTTCACAGGTTTCCACTGCATGAACTaatctcccttccttcct
ccctccctctcttccttcctccctccctccctcccttcttcctccatccc
tcccttcctcttgcctgccaggacgagaaggaagtggaTTTGGACGACCC
TTATGCCCACGAGCCAGAGAGGCACCCCGCTTTCAAAATAAACACACTGA
AGCCCTTCAATGCTGAGCCCCCTGGCGCTCTTCTGGttggacgggaggga
gggagggaggaagggagtgagggagggagggaggtgcctGTCGCGAGATT
ATGCCTGGAAAATGCTGGTTATAAAAGTGACTGCATTGTCGTATCTTTTC
TATCATTTCAATTTTGACATTTCATTCCCTttgcctctccccttttctct
tccctccctccttccctccctccgtcccgccctcccttcatcgcTGGTCG
TCCAGGTGGATAGTTTCGTGACTCCGAACGCGCTCTTCTTCAAGCGAAAC
CACCTCCCGGTGCCCGACGTCAAGGAAGAGGACTACTTGCTCGAGGttaa

Coding sequence (CDS) from alignment at CM002460.1:1137666..1139265+

>rna3258 ID=rna3258|Name=rna3258|organism=Nannochloropsis gaditana|type=CDS|length=4230bp|location=Sequence derived from alignment at CM002460.1:1137666..1139265+ (Nannochloropsis gaditana)
ATGCTACGTCATGCCGTTGTCCGTTTTCCAGCTGCGTTTAAGCGGATCAA
CGTAATCCGTGGAGGGTGTCTGGCCCAATGCAGCCCTTGCAGGAGCTTGG
AGATCCACCGGCATTCGCACGCCCGAGTCATGACAAGTGCAGCAGCtgcg
ctttcctcttccttccaggATAAACGGGATACTGGCAACACGAGGGCAGT
GGTGCTGCTAGCTTTGTCGTTAATTGCCGGTGTGGGGGGGATAAGAACAG
CGTCCCCCGCCCAGACCGAAGCGGGCGCAACGGACGCAGGCGTGAAAGAG
ATAGAGTACACCAAGGCAGACGTCAAAGCACACAAGACGATCGAAACAGG
CGTATGGGTCACTTACAAAGACGGCGTGTACGACATCACAAAATTTGCGG
AGAACCATCCCGGAGGAAACAAGATTCTCATGGCAGCCGGGGGCCCGGTT
GAACCCTATTGGAATTTGTATGCCGTCCACAAAGATCCTGAGGTGCAGGA
AACCATCAAAGAGATCCTGGGGGAGCTCCGAATCGGAACCTTGAAGCACA
GCCCGGAGgacgagaaggaagtggaTTTGGACGACCCTTATGCCCACGAG
CCAGAGAGGCACCCCGCTTTCAAAATAAACACACTGAAGCCCTTCAATGC
TGAGCCCCCTGGCGCTCTTCTGGTGGATAGAAGAGGACTACTTGCTCGAG
GttaaATGCTACGTCATGCCGTTGTCCGTTTTCCAGCTGCGTTTAAGCGG
ATCAACGTAATCCGTGGAGGGTGTCTGGCCCAATGCAGCCCTTGCAGGAG
CTTGGAGATCCACCGGCATTCGCACGCCCGAGTCATGACAAGTGCAGCAG
CtgcgctttcctcttccttccaggATAAACGGGATACTGGCAACACGAGG
GCAGTGGTGCTGCTAGCTTTGTCGTTAATTGCCGGTGTGGGGGGGATAAG
AACAGCGTCCCCCGCCCAGACCGAAGCGGGCGCAACGGACGCAGGCGTGA
AAGAGATAGAGTACACCAAGGCAGACGTCAAAGCACACAAGACGATCGAA
ACAGGCGTATGGGTCACTTACAAAGACGGCGTGTACGACATCACAAAATT
TGCGGAGAACCATCCCGGAGGAAACAAGATTCTCATGGCAGCCGGGGGCC
CGGTTGAACCCTATTGGAATTTGTATGCCGTCCACAAAGATCCTGAGGTG
CAGGAAACCATCAAAGAGATCCTGGGGGAGCTCCGAATCGGAACCTTGAA
GCACAGCCCGGAGgacgagaaggaagtggaTTTGGACGACCCTTATGCCC
ACGAGCCAGAGAGGCACCCCGCTTTCAAAATAAACACACTGAAGCCCTTC
AATGCTGAGCCCCCTGGCGCTCTTCTGGTGGATAGAAGAGGACTACTTGC
TCGAGGttaaATGCTACGTCATGCCGTTGTCCGTTTTCCAGCTGCGTTTA
AGCGGATCAACGTAATCCGTGGAGGGTGTCTGGCCCAATGCAGCCCTTGC
AGGAGCTTGGAGATCCACCGGCATTCGCACGCCCGAGTCATGACAAGTGC
AGCAGCtgcgctttcctcttccttccaggATAAACGGGATACTGGCAACA
CGAGGGCAGTGGTGCTGCTAGCTTTGTCGTTAATTGCCGGTGTGGGGGGG
ATAAGAACAGCGTCCCCCGCCCAGACCGAAGCGGGCGCAACGGACGCAGG
CGTGAAAGAGATAGAGTACACCAAGGCAGACGTCAAAGCACACAAGACGA
TCGAAACAGGCGTATGGGTCACTTACAAAGACGGCGTGTACGACATCACA
AAATTTGCGGAGAACCATCCCGGAGGAAACAAGATTCTCATGGCAGCCGG
GGGCCCGGTTGAACCCTATTGGAATTTGTATGCCGTCCACAAAGATCCTG
AGGTGCAGGAAACCATCAAAGAGATCCTGGGGGAGCTCCGAATCGGAACC
TTGAAGCACAGCCCGGAGgacgagaaggaagtggaTTTGGACGACCCTTA
TGCCCACGAGCCAGAGAGGCACCCCGCTTTCAAAATAAACACACTGAAGC
CCTTCAATGCTGAGCCCCCTGGCGCTCTTCTGGTGGATAGAAGAGGACTA
CTTGCTCGAGGttaaATGCTACGTCATGCCGTTGTCCGTTTTCCAGCTGC
GTTTAAGCGGATCAACGTAATCCGTGGAGGGTGTCTGGCCCAATGCAGCC
CTTGCAGGAGCTTGGAGATCCACCGGCATTCGCACGCCCGAGTCATGACA
AGTGCAGCAGCtgcgctttcctcttccttccaggATAAACGGGATACTGG
CAACACGAGGGCAGTGGTGCTGCTAGCTTTGTCGTTAATTGCCGGTGTGG
GGGGGATAAGAACAGCGTCCCCCGCCCAGACCGAAGCGGGCGCAACGGAC
GCAGGCGTGAAAGAGATAGAGTACACCAAGGCAGACGTCAAAGCACACAA
GACGATCGAAACAGGCGTATGGGTCACTTACAAAGACGGCGTGTACGACA
TCACAAAATTTGCGGAGAACCATCCCGGAGGAAACAAGATTCTCATGGCA
GCCGGGGGCCCGGTTGAACCCTATTGGAATTTGTATGCCGTCCACAAAGA
TCCTGAGGTGCAGGAAACCATCAAAGAGATCCTGGGGGAGCTCCGAATCG
GAACCTTGAAGCACAGCCCGGAGgacgagaaggaagtggaTTTGGACGAC
CCTTATGCCCACGAGCCAGAGAGGCACCCCGCTTTCAAAATAAACACACT
GAAGCCCTTCAATGCTGAGCCCCCTGGCGCTCTTCTGGTGGATAGAAGAG
GACTACTTGCTCGAGGttaaATGCTACGTCATGCCGTTGTCCGTTTTCCA
GCTGCGTTTAAGCGGATCAACGTAATCCGTGGAGGGTGTCTGGCCCAATG
CAGCCCTTGCAGGAGCTTGGAGATCCACCGGCATTCGCACGCCCGAGTCA
TGACAAGTGCAGCAGCtgcgctttcctcttccttccaggATAAACGGGAT
ACTGGCAACACGAGGGCAGTGGTGCTGCTAGCTTTGTCGTTAATTGCCGG
TGTGGGGGGGATAAGAACAGCGTCCCCCGCCCAGACCGAAGCGGGCGCAA
CGGACGCAGGCGTGAAAGAGATAGAGTACACCAAGGCAGACGTCAAAGCA
CACAAGACGATCGAAACAGGCGTATGGGTCACTTACAAAGACGGCGTGTA
CGACATCACAAAATTTGCGGAGAACCATCCCGGAGGAAACAAGATTCTCA
TGGCAGCCGGGGGCCCGGTTGAACCCTATTGGAATTTGTATGCCGTCCAC
AAAGATCCTGAGGTGCAGGAAACCATCAAAGAGATCCTGGGGGAGCTCCG
AATCGGAACCTTGAAGCACAGCCCGGAGgacgagaaggaagtggaTTTGG
ACGACCCTTATGCCCACGAGCCAGAGAGGCACCCCGCTTTCAAAATAAAC
ACACTGAAGCCCTTCAATGCTGAGCCCCCTGGCGCTCTTCTGGTGGATAG
AAGAGGACTACTTGCTCGAGGttaaATGCTACGTCATGCCGTTGTCCGTT
TTCCAGCTGCGTTTAAGCGGATCAACGTAATCCGTGGAGGGTGTCTGGCC
CAATGCAGCCCTTGCAGGAGCTTGGAGATCCACCGGCATTCGCACGCCCG
AGTCATGACAAGTGCAGCAGCtgcgctttcctcttccttccaggATAAAC
GGGATACTGGCAACACGAGGGCAGTGGTGCTGCTAGCTTTGTCGTTAATT
GCCGGTGTGGGGGGGATAAGAACAGCGTCCCCCGCCCAGACCGAAGCGGG
CGCAACGGACGCAGGCGTGAAAGAGATAGAGTACACCAAGGCAGACGTCA
AAGCACACAAGACGATCGAAACAGGCGTATGGGTCACTTACAAAGACGGC
GTGTACGACATCACAAAATTTGCGGAGAACCATCCCGGAGGAAACAAGAT
TCTCATGGCAGCCGGGGGCCCGGTTGAACCCTATTGGAATTTGTATGCCG
TCCACAAAGATCCTGAGGTGCAGGAAACCATCAAAGAGATCCTGGGGGAG
CTCCGAATCGGAACCTTGAAGCACAGCCCGGAGgacgagaaggaagtgga
TTTGGACGACCCTTATGCCCACGAGCCAGAGAGGCACCCCGCTTTCAAAA
TAAACACACTGAAGCCCTTCAATGCTGAGCCCCCTGGCGCTCTTCTGGTG
GATAGAAGAGGACTACTTGCTCGAGGttaa

Synonyms

Publications