EWM27425.1, cds3249 (CDS) Nannochloropsis gaditana

Overview
NameEWM27425.1
Unique Namecds3249
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1137666..1138077 +
Alignment locationCM002460.1:1138182..1138261 +
Alignment locationCM002460.1:1138564..1138629 +
Alignment locationCM002460.1:1138837..1138950 +
Alignment locationCM002460.1:1139171..1139177 +
Alignment locationCM002460.1:1139240..1139265 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27425.1
Productsulfite oxidase
Orig transcript idgnl|cribi|Naga_100899g1.9840.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1137666..1138077 +
CM002460.1supercontigCM002460.1:1138182..1138261 +
CM002460.1supercontigCM002460.1:1138564..1138629 +
CM002460.1supercontigCM002460.1:1138837..1138950 +
CM002460.1supercontigCM002460.1:1139171..1139177 +
CM002460.1supercontigCM002460.1:1139240..1139265 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
Homology
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|585109662|gb|EWM27425.1| (sulfite oxidase [Nannochloropsis gaditana])

HSP 1 Score: 483.026 bits (1242), Expect = 1.042e-172
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MLRHAVVRFPAAFKRINVIRGGCLAQCSPCRSLEIHRHSHARVMTSAAAALSSSFQDKRDTGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIEYTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVDRRGLLARG 234
            MLRHAVVRFPAAFKRINVIRGGCLAQCSPCRSLEIHRHSHARVMTSAAAALSSSFQDKRDTGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIEYTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVDRRGLLARG
Sbjct:    1 MLRHAVVRFPAAFKRINVIRGGCLAQCSPCRSLEIHRHSHARVMTSAAAALSSSFQDKRDTGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIEYTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVDRRGLLARG 234          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|1101645604|ref|XP_018922021.1| (PREDICTED: sulfite oxidase, mitochondrial [Cyprinus carpio])

HSP 1 Score: 153.68 bits (387), Expect = 5.953e-42
Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 0
Query:   74 LIAGVGGIRTASPAQ--TEAGATDAGVKEIE------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLK-HSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            L+AG G +      Q   +  AT A ++  +      YT  +V  H+++++GVWVTYK GVYDIT+F   HPGG+KIL+AAGG +EPYW LYAVH+    Q+ + EIL E +IG L   S + ++  +  DPY+ EP RHPA +INTLKPFNAEPP ++L D
Sbjct:  118 LLAGTGAVLAYKLHQDKVQLAATSAQLRVTQTSDLPVYTLEEVTKHRSLDSGVWVTYKGGVYDITEFVAIHPGGDKILLAAGGALEPYWALYAVHQ----QDHVLEILSEYKIGVLNPESYKKQESANPSDPYSAEPTRHPALQINTLKPFNAEPPASILSD 275          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|459186070|ref|XP_002125613.2| (PREDICTED: sulfite oxidase-like [Ciona intestinalis])

HSP 1 Score: 157.918 bits (398), Expect = 1.428e-41
Identity = 71/124 (57.26%), Postives = 94/124 (75.81%), Query Frame = 0
Query:  103 YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            Y+  ++  H T + G+WV+YKDGVYDIT+F ++HPGG KIL+A+GGP++P+WN+YAVHK  EV     EIL + +IG L  SPED+K +DL+DP+A EP R P F+IN+ KPFNAEPP  LL D
Sbjct:   87 YSSQEIMKHTTKDNGIWVSYKDGVYDITEFVDSHPGGEKILLASGGPIDPFWNMYAVHKSEEVL----EILEQYKIGIL--SPEDQKPIDLNDPFAKEPARLPVFRINSKKPFNAEPPLELLTD 204          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|961923276|ref|XP_014861901.1| (PREDICTED: sulfite oxidase, mitochondrial [Poecilia mexicana] >gi|961923280|ref|XP_014861902.1| PREDICTED: sulfite oxidase, mitochondrial [Poecilia mexicana])

HSP 1 Score: 155.221 bits (391), Expect = 1.956e-40
Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 0
Query:   30 CRSL-EIHRHSHARVMTSAAAAL-SSSFQDKRD------TGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIE-------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEK---EVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            CRSL  + RH  A    S A  L SSS +D+R       + N + +V     ++ G G + T      E    DAG+   E       ++  +V  H+++E GVWVTYK GVYD+T+F   HPGGNKIL+AAGG +EP+W LYAVH     QE + EIL + ++G L  S ED K   E    DPY+ +PERHP  +IN+ KPFNAEPP  +L +
Sbjct:    7 CRSLTRLQRHQAAPCFASRAVRLCSSSTEDQRSHQRANWSANWKRIVA---GVLTGTGAVVTYGLLHQEVEQADAGLPTTERSSSLPVFSHDEVTKHRSLEDGVWVTYKGGVYDVTEFVPIHPGGNKILLAAGGALEPFWALYAVHD----QEYVLEILSQYKVGEL--SAEDLKKQGEAKASDPYSSDPERHPVLRINSKKPFNAEPPPEILTE 212          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|617500038|ref|XP_007540798.1| (PREDICTED: sulfite oxidase, mitochondrial [Poecilia formosa] >gi|617500041|ref|XP_007540799.1| PREDICTED: sulfite oxidase, mitochondrial [Poecilia formosa])

HSP 1 Score: 155.221 bits (391), Expect = 1.976e-40
Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 0
Query:   30 CRSL-EIHRHSHARVMTSAAAAL-SSSFQDKRD------TGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIE-------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEK---EVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            CRSL  + RH  A    S A  L SSS +D+R       + N + +V     ++ G G + T      E    DAG+   E       ++  +V  H+++E GVWVTYK GVYD+T+F   HPGGNKIL+AAGG +EP+W LYAVH     QE + EIL + ++G L  S ED K   E    DPY+ +PERHP  +IN+ KPFNAEPP  +L +
Sbjct:    7 CRSLTRLQRHQAAPCFASRAVRLCSSSTEDQRSHQRANWSANWKRIVA---GVLTGTGAVVTYGLLHQEVEQADAGLPTTERSSSLPVFSHDEVTKHRSLEDGVWVTYKGGVYDVTEFVPIHPGGNKILLAAGGALEPFWALYAVHD----QEYVLEILSQYKVGEL--SAEDLKKQGEAKASDPYSSDPERHPVLRINSKKPFNAEPPPEILTE 212          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|961984380|ref|XP_014872010.1| (PREDICTED: sulfite oxidase, mitochondrial [Poecilia latipinna] >gi|961984384|ref|XP_014872012.1| PREDICTED: sulfite oxidase, mitochondrial [Poecilia latipinna])

HSP 1 Score: 155.221 bits (391), Expect = 2.190e-40
Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 0
Query:   30 CRSL-EIHRHSHARVMTSAAAAL-SSSFQDKRD------TGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIE-------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEK---EVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            CRSL  + RH  A    S A  L SSS +D+R       + N + +V     ++ G G + T      E    DAG+   E       ++  +V  H+++E GVWVTYK GVYD+T+F   HPGGNKIL+AAGG +EP+W LYAVH     QE + EIL + ++G L  S ED K   E    DPY+ +PERHP  +IN+ KPFNAEPP  +L +
Sbjct:    7 CRSLTRLQRHQAAPCFASRAVRLCSSSTEDQRSHQRANWSANWKRIVA---GVLTGTGAVVTYGLLHQEVEQADAGLPTTERSSSLPVFSHDEVTKHRSLEDGVWVTYKGGVYDVTEFVPIHPGGNKILLAAGGALEPFWALYAVHD----QEYVLEILSQYKVGEL--SAEDLKKQGEAKASDPYSSDPERHPVLRINSKKPFNAEPPPEILTE 212          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|1041097413|ref|XP_017271431.1| (PREDICTED: sulfite oxidase, mitochondrial [Kryptolebias marmoratus] >gi|1041097415|ref|XP_017271432.1| PREDICTED: sulfite oxidase, mitochondrial [Kryptolebias marmoratus])

HSP 1 Score: 154.066 bits (388), Expect = 4.888e-40
Identity = 88/213 (41.31%), Postives = 122/213 (57.28%), Query Frame = 0
Query:   24 LAQCSPCRSLEIHRHSHARVMTSAAAALSSSF--QDKRDTGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIE-------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSP-EDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            L +C P  +   HRH     + S  A L SS   +D+R +  T    +LA  L+AG G +      Q +A   D GV  +E       +++ +V  H ++E GVWVTYK  VYDIT+F   HPGGNKIL+AAGG +EP+W LYAVH     QE + EIL + ++G L     + ++  +  DP++ +PERHP  +INT KPFN EPP  +L D
Sbjct:   10 LTRCGPVST---HRHKVTPAVASCTARLCSSSGAEDQRLSQRTNWKHVLA-GLLAGTGAVLAYGLHQHKAEQADVGVSTLEKSSPLPIFSQDEVTKHSSLEHGVWVTYKGSVYDITEFVAMHPGGNKILLAAGGALEPFWALYAVHN----QEHVLEILSQYKVGELTEDDLKKQRAAEPTDPFSSDPERHPVLRINTRKPFNGEPPPEILSD 214          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|1007751285|ref|XP_015815180.1| (PREDICTED: sulfite oxidase, mitochondrial [Nothobranchius furzeri] >gi|1007751287|ref|XP_015815182.1| PREDICTED: sulfite oxidase, mitochondrial [Nothobranchius furzeri])

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-40
Identity = 87/218 (39.91%), Postives = 124/218 (56.88%), Query Frame = 0
Query:   18 VIRGGC-LAQCSPCRSLEIHRHSHARVMTSAAAALSSSFQDKRDTGNTRAVVLLALSLIAGVGGIRTASPAQTEAGATDAGVKEIE-------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTL-KHSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            ++R  C L +C P   +   R   A  +TS AA   SS  + + +        +   L+AG G +   S  + +A   D  V   E       +++ +V  H+++E GVWVTYK GVYDIT+F   HPGGNKIL+AAGG +EP+W LYAVH     QE + EIL E ++G L +   + ++     DP++ +PERHP  ++NTLKPFNAEPP  +L D
Sbjct:    3 LLRRCCSLTRCGP---ISTRRLKVAPAVTSCAARFCSSGSEDQSSYQCANWKHILAGLLAGTGAVLVYSQHRHKAERADVSVTITEKGSLLPVFSQDEVTKHRSLEDGVWVTYKGGVYDITEFVAMHPGGNKILLAAGGALEPFWALYAVHD----QEHVLEILSEYKVGELCEEDLKKQQASKPSDPFSSDPERHPVLQVNTLKPFNAEPPPEILSD 213          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|831326853|ref|XP_012696563.1| (PREDICTED: sulfite oxidase, mitochondrial [Clupea harengus] >gi|831326855|ref|XP_012696564.1| PREDICTED: sulfite oxidase, mitochondrial [Clupea harengus])

HSP 1 Score: 152.14 bits (383), Expect = 2.790e-39
Identity = 86/224 (38.39%), Postives = 124/224 (55.36%), Query Frame = 0
Query:   24 LAQCSPCRSLEIHRHSHARVMTSAAAALSSS----FQDKRDTGNTRAVVLLALSL---------IAGVGGIRTASPAQTEAGATDAGVKEIE------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIG--TLKHSPEDEKEVDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            L  C     +   R   A+++   A A+++     +Q   D G     V  +LSL         +AG G +       ++A      ++ +       Y++ +V  HK++  GVWVTYK GVYDIT F   HPGG+KIL+AAGG +EP+W+LYAVH     Q+ + EIL E ++G  +L+   + +K  D  DPY+ +PERHPA  +N+LKPFNAEPP ALL D
Sbjct:    4 LRHCQGLARVSFLRTQRAQLLKGVAPAVTACVVPRWQSSGDYGGQSGQVHNSLSLRWTHLLAGLVAGTGAVLAYGLHNSQAERAATPIEPVTQSSFPIYSQDEVTKHKSLNEGVWVTYKGGVYDITTFISMHPGGDKILLAAGGALEPFWSLYAVHG----QDHVLEILSEYKVGELSLEDQKKQQKNADSSDPYSTDPERHPALNVNSLKPFNAEPPPALLSD 223          
BLAST of EWM27425.1 vs. NCBI_GenBank
Match: gi|1079769708|ref|XP_018554620.1| (PREDICTED: LOW QUALITY PROTEIN: sulfite oxidase, mitochondrial [Lates calcarifer])

HSP 1 Score: 152.14 bits (383), Expect = 2.983e-39
Identity = 80/163 (49.08%), Postives = 106/163 (65.03%), Query Frame = 0
Query:   74 LIAGVGGIRTASPAQTEAGATDAGVKEIE-------YTKADVKAHKTIETGVWVTYKDGVYDITKFAENHPGGNKILMAAGGPVEPYWNLYAVHKDPEVQETIKEILGELRIGTLKHSPEDEKE---VDLDDPYAHEPERHPAFKINTLKPFNAEPPGALLVD 226
            L+AG G +      Q +A   ++ V+ IE       Y++ +V  H+++E GVWVTYK GVYDITKF   HPGG+KIL+AAGG +EP+W LYAVH     QE + EIL E ++G L  S ED+K+   +   DPY+ +PERHP  +IN LKPFNAEPP  +L D
Sbjct:   61 LLAGTGAVLAYGFHQHKAERAESRVQTIEKTSSLPVYSQEEVTKHRSLEDGVWVTYKGGVYDITKFVAMHPGGDKILLAAGGALEPFWALYAVHN----QEHVLEILSEYKVGEL--SAEDQKKQQALKSSDPYSSDPERHPVLRINNLKPFNAEPPPEILSD 217          
The following BLAST results are available for this feature:
BLAST of EWM27425.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109662|gb|EWM27425.1|1.042e-172100.00sulfite oxidase [Nannochloropsis gaditana][more]
gi|1101645604|ref|XP_018922021.1|5.953e-4248.15PREDICTED: sulfite oxidase, mitochondrial [Cyprinu... [more]
gi|459186070|ref|XP_002125613.2|1.428e-4157.26PREDICTED: sulfite oxidase-like [Ciona intestinali... [more]
gi|961923276|ref|XP_014861901.1|1.956e-4042.79PREDICTED: sulfite oxidase, mitochondrial [Poecili... [more]
gi|617500038|ref|XP_007540798.1|1.976e-4042.79PREDICTED: sulfite oxidase, mitochondrial [Poecili... [more]
gi|961984380|ref|XP_014872010.1|2.190e-4042.79PREDICTED: sulfite oxidase, mitochondrial [Poecili... [more]
gi|1041097413|ref|XP_017271431.1|4.888e-4041.31PREDICTED: sulfite oxidase, mitochondrial [Kryptol... [more]
gi|1007751285|ref|XP_015815180.1|9.696e-4039.91PREDICTED: sulfite oxidase, mitochondrial [Nothobr... [more]
gi|831326853|ref|XP_012696563.1|2.790e-3938.39PREDICTED: sulfite oxidase, mitochondrial [Clupea ... [more]
gi|1079769708|ref|XP_018554620.1|2.983e-3949.08PREDICTED: LOW QUALITY PROTEIN: sulfite oxidase, m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3258rna3258Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications