rna3253, rna3253 (mRNA) Nannochloropsis gaditana

Overview
Namerna3253
Unique Namerna3253
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length453
Alignment locationCM002460.1:1125243..1126571 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100951g1.1370.mrna
Orig protein idgnl|cribi|Naga_100951g1.1370
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1125243..1126571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100951g1gene3132Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3253rna3253-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27430.1cds3244Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3253 ID=rna3253|Name=rna3253|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
ATGTTTGGCATGGACGTGACGCTGGCCACAAGGGCCGGGCAGGAAAGCTG
CTGTCTGAAACTTGGCATCAAGCACTGCAGACAGCCGCCACCATGCATAA
GAAATCGTGTGTCGTGCTGCCACCAGGTTCTGAAGTTAAAATCTACGGGT
GACACCATGAACCCCATCCAAAACATACCGCCTCATCAACGCCAAGAGTT
TATGCGCACGTTGGAGGAGTTGCAGGTCAAGGACTCTTTGCTGATGTACA
ATCGGCTGGTAGAACGCTGTTTCAAGGAATGCGTCACGCGCTTCCGTTCC
AAGAAAATGGACGACACCGAATTGTCTTGCGTTTCGAAGTGCGCGGAGAA
ATATCTCAAGCTGACGTCGAGGGCAGGTTTCAGGTTCGCGGAGTTTCAAT
CGCAACAGAGCGGGTCGGAGGGAGGGGTTATGCCTCCACCGGGAAATAAT
TGA
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protein sequence of rna3253

>rna3253-protein ID=rna3253-protein|Name=rna3253|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MERRLEQIMREREDCWRAVNSIKTDLTTQTLLKKCMACAYARQLVPCPVC
HFTSPGGRVALRPASCTGTSLSDTHIPSVKCMLPPPDFISAHIYPIPHMH
TLAPFLFPFLCNYLLQPPLSSPWPHARAFESAAPPSLRGPQTGPRQPIQD
AADCRQTLPSTGRACVRRWTTWTTTSRTLPPKQSGGKPTTLPKRSRRQRQ
PALISRTQRPGWRKPRRARM
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mRNA from alignment at CM002460.1:1125243..1126571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3253 ID=rna3253|Name=rna3253|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp|location=Sequence derived from alignment at CM002460.1:1125243..1126571+ (Nannochloropsis gaditana)
CTAGGCGTTGAAAAAGCACGTTGTGGAAGTAtcggagggtgggagacTTC
CTCGCGGTTGCTGAGTACAGCGTCACTATTTTTTTCGGAGCTTGAATGGG
TCGGTACACGTCATTTGATGGTTCAATGTGACAGCTTTACTGTTTGATAA
ACAGGACGTCCGCAAGAGGAAGCTCGAGATCTTCAAGTGCATGTCCCCCC
CCGTGCCGTCCATGTGTTTTATGCATCTTCTTTGTTTCACCGTGAAGCCC
TCTCATCTTTGAAAAGCAGGCACACAATCATGAAGCTTTTTCTTGCATTG
ACCACGGCCGCGGCCTCGATATCGCTTGGTGagtcaaggaaggggacaag
GTGGAACCATGGAAAGGAGGCTCGAGCAGATCATGCGGGAGCGTGAGGAT
TGCTGGCGGGCTGTGAATTCGATAAAGACGGACTTGACAACGCAAACCCT
GCTAAAGAAGTGCATGGCTTGTGCATATGCCCGACAATTGGTCCCGTGTC
CTGTGTGTCATTTCACATCCCCGGGTGGACGAGTTGCCCTTCGTCCTGCG
TCGTGTACAGGCACCTCGCTCTCTGACACACATATACCTTCCGTGAAATG
CATGCTCCCCCCACCCGATTTTATATCCGCCCACATTTATCCCATTCCTC
ACATGCATACGTtggctcccttcctcttccccttcctttgcaattatctc
ctccagcctccgctttcctccccctggccccacGCCCGAGCCTTCGAGTC
AGCCgcacctccctcgctgcgTGGACCCCAGACCGGGCCCCGGCAACCAA
TCCAGGACGCAGCGGATTGTCGGCAGACGCTTCCTTCGACCGGGCGGGCG
TGCGTGCGGAGGTGGACTACATGGACAACGACCAGCAGGCACGTggtcgc
cctcttccccgccctccctccctccctcccgcccacccttcctccccttt
tcccttccctccactcgtCTGGTGGAGGATGCGACTGTGATACACATATG
TTTACGCAAAGAGGAGCTCCCCGACGCGATCAACccctgatggaggagga
ggaggagattccCACCACCCCGTTTCGTCCCCTCgctcatcccttcctcc
ctccctccctccctccctccctccctccctccctccctccttctttcaga
accctccctcccaaacAAAGTGGTGGGAAGCCTACTACCCTTCccaagag
gagcaggaggcagcggcagccGGCTTTGATTTCTCGAACCCAGAGGCCTG
GCTGGCGCAAGCCAAGGAGGGCACGAATGTGAAGATGGAGGATCCGTCAT
TCGAGGCGACGGAGGGCTTCACGTCGGCA
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Coding sequence (CDS) from alignment at CM002460.1:1125243..1126571+

>rna3253 ID=rna3253|Name=rna3253|organism=Nannochloropsis gaditana|type=CDS|length=1326bp|location=Sequence derived from alignment at CM002460.1:1125243..1126571+ (Nannochloropsis gaditana)
ATGGAAAGGAGGCTCGAGCAGATCATGCGGGAGCGTGAGGATTGCTGGCG
GGCTGTGAATTCGATAAAGACGGACTTGACAACGCAAACCCTGCTAAAGA
AGTGCATGGCTTGTGCATATGCCCGACAATTGGTCCCGTGTCCTGTGTGT
CATTTCACATCCCCGGGTGGACGAGTTGCCCTTCGTCCTGCGTCGTGTAC
AGGCACCTCGCTCTCTGACACACATATACCTTCCGTGAAATGCATGCTCC
CCCCACCCGATTTTATATCCGCCCACATTTATCCCATTCCTCACATGCAT
ACGTtggctcccttcctcttccccttcctttgcaattatctcctccagcc
tccgctttcctccccctggccccacGCCCGAGCCTTCGAGTCAGCCgcac
ctccctcgctgcgTGGACCCCAGACCGGGCCCCGGCAACCAATCCAGGAC
GCAGCGGATTGTCGGCAGACGCTTCCTTCGACCGGGCGGGCGTGCGTGCG
GAGGTGGACTACATGGACAACGACCAGCAGaaccctccctcccaaacAAA
GTGGTGGGAAGCCTACTACCCTTCccaagaggagcaggaggcagcggcag
ccGGCTTTGATTTCTCGAACCCAGAGGCCTGGCTGGCGCAAGCCAAGGAG
GGCACGAATGTGAATGGAAAGGAGGCTCGAGCAGATCATGCGGGAGCGTG
AGGATTGCTGGCGGGCTGTGAATTCGATAAAGACGGACTTGACAACGCAA
ACCCTGCTAAAGAAGTGCATGGCTTGTGCATATGCCCGACAATTGGTCCC
GTGTCCTGTGTGTCATTTCACATCCCCGGGTGGACGAGTTGCCCTTCGTC
CTGCGTCGTGTACAGGCACCTCGCTCTCTGACACACATATACCTTCCGTG
AAATGCATGCTCCCCCCACCCGATTTTATATCCGCCCACATTTATCCCAT
TCCTCACATGCATACGTtggctcccttcctcttccccttcctttgcaatt
atctcctccagcctccgctttcctccccctggccccacGCCCGAGCCTTC
GAGTCAGCCgcacctccctcgctgcgTGGACCCCAGACCGGGCCCCGGCA
ACCAATCCAGGACGCAGCGGATTGTCGGCAGACGCTTCCTTCGACCGGGC
GGGCGTGCGTGCGGAGGTGGACTACATGGACAACGACCAGCAGaaccctc
cctcccaaacAAAGTGGTGGGAAGCCTACTACCCTTCccaagaggagcag
gaggcagcggcagccGGCTTTGATTTCTCGAACCCAGAGGCCTGGCTGGC
GCAAGCCAAGGAGGGCACGAATGTGA
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Synonyms
Publications