rna3249, rna3249 (mRNA) Nannochloropsis gaditana

Overview
Namerna3249
Unique Namerna3249
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length747
Alignment locationCM002460.1:1117562..1119062 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101109g1.2595.mrna
Orig protein idgnl|cribi|Naga_101109g1.2595
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1117562..1119062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101109g1gene3127Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27432.1cds3240Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3249rna3249-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3249 ID=rna3249|Name=rna3249|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
ATGCCACCTCCCTCTGGCGTGTCCCGCCCTCCATCCTTCAGCATCACATT
GAGAAAGCTTCTTTCTCACATTCACCTGGGAAGCTTAACAGCTCGAAGCG
ATGGGCCGTGCTCATTTGTGCGGCTGAGGGACAAGAAGGGTGGATTTGCG
GGGTATCGGCATTTGGGTACTCATCGCATGGATTCGGATGAGGAGACGCG
CGGGTTGGTTTATCAGGACATTGTCGAATGGGGGAAGGAGGACGAACGTC
GGGCCACACCCTCGTACGCGAGCCTGCGCCGGGCGATGACGGAACTGGAA
AAAGGAACGAAGGAAAAAGATCAGCGATGTAGCACTTTCGAAGACTTCAT
TGTCTGGACTTCGGACATCAGCAATGTCAGGCAGCGTCCAAAAAATGTCC
TTTTATCACCAATGTCCGGCAGGATCCAAAAGATTGATGACGTCATGATC
CTCATCTTGGATACATTTGCCATCTGCGTGTGCTGGTTGGAATTGAGAGA
TCGTTTGGAAAGGGGGCGGACGGGCATCCTCTTCAGGGGGAAAAAAATTA
CCCATGCAATGTCTACTTGTAAAGTTCAACTCAAGAAATACACACCGTCA
CACCATCCGCATATAAAACCGTTATTGACAGCCAATATGATGCATCTAAA
GAAAATAATGTGGCTCTACAACGAGAGCGAAAAATTGTCGTTCCAAATTC
TGTCCAGCCTGAACAGAGGCATCGCATATAAACTCTTTTTTCCCTGA
back to top

protein sequence of rna3249

>rna3249-protein ID=rna3249-protein|Name=rna3249|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSL
CPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPAKVPRACPRP
RRRRKDTGASPLRRETTPCLVPPSLPPVFTPPDFSGRDKGCTCTVVPRPQ
SPPHTPPVPPSEALHASAPARRERLGGSGSQCGSEVTTETEKCREGVGAT
LEEHTDSHELATTSSFPEASRSFLFAFPPSLPLSLSLSLSLSLSLSLSLS
back to top

mRNA from alignment at CM002460.1:1117562..1119062-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3249 ID=rna3249|Name=rna3249|organism=Nannochloropsis gaditana|type=mRNA|length=1501bp|location=Sequence derived from alignment at CM002460.1:1117562..1119062- (Nannochloropsis gaditana)
CCTGGAAAGCCTTCCAATCAGACCAGCAGCGTGGAAAGCCCTGGTCCAAA
TGGCACACCAGGGCCTTCCTTCCGTAGCGCCGGCGTTTGTGGTAAAATTA
GGCATTGCACCGATGTATGCCCGCATTCGTTGAAGTAATGAATGTGGAAA
ATGTCTAGGACGTGTTATAGCACCAGACCATACATGGTATGTACGCATCA
CAGGACGTCACGTGCTACAATTGATCCTGTCAGCCCCCTGAATATGCCCC
CAAATGCCAAACCTGACAGATGCAACGACGTTTGTTGATGGGTACATAGA
CTTTAAACGCAGCCACTATGCCAGATGCCCAGTATTTGCGTCATGTACAC
TTGTGTGGATGACACGCCAGCACAACTTCGTTTTCATACACTCAACTCTG
TATGCAGCGAGCACCGAGGCGGTTGCCATTTCCTGCGTTTTCCGTTTTTC
CCCAACGAAACATCCGTCTCTGCCCTTTGAAATATTTATCCCTTACAAAA
AATTGTCCTGGTTGTGAGCGCTTTCGCTGCTCGCTTTCGTTTTCCCAGCC
CTCGGGAGCCTTGAGTGTTAAAAAGTTCAACGCAACTTCCAGGTAGGTCG
GAGAAGTATCAGAAGGGACCGAGTGGGCGAAAAAATGTAAGCATTTGACA
TACCACTCGTGACATTTGGGGGGCAGCACAGGTGTGGCATTATTTATAAT
TTTCGTCCTCTAAGGTACCGCGCTGAAGCCAGACAGCGCGAGGCGGAGAG
AGATGCGGAAAGGCGTCTGCAAAGGCACATCCGAGCTTCGCTCCGACGGA
AAGCCAACGCGTGGAAAAGTAAGAGGTGGTCCAGTCCCTTCTGCACCGAG
CGCTGTGCCTGTAGCCGTGTCGCGCCCGTACCACTACGCGACCCGGAGTC
TCTGCCCCCTCCCAGACCATCCCCCCAGCCCCATCCGAGGCCGCGTCCGT
CGAGTTTCCTCGGAACCACAAGCACGACGAGGGGATACAGGTGATCCCAC
CCATGGCGCAGACGGCGTTCCCGCGAAAGTCCCGCGCGCATGCCCCCGTC
CACGGCGACGGAGGAAAGACACGGGGGCCTCGCCGCTTCGAAGGGAGACG
ACTCCTTGCCTGGTCCCTCCCTCCCTCCCTCCCGTCTTCACCCCACCCGA
TTTCTCAGGGAGGGACAAAGGTTGCACTTGCACCGTTGTGCCGCGGCCGC
AGTCCCCGCCCCACACCCCTCCGGTGCCGCCGAGTGAGGCGCTCCATGCC
TCTGCCCCCGCGCGACGGGAACGGCTGGGAGGGAGCGGCTCCCAGTGCGG
AAGCGAGGTCACCACGGAGACCGAAAAATGCCGAGAGGGGGTCGGAGCTA
CCCTTGAGGAGCATACGGACTCACACGAGCTGGCAACGACCAGTTCCTTT
CCCGAGGCGTCGCGCTCCTTCCTCTTCGCCTTCCCTCCCTCCCTCCCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
C
back to top

Coding sequence (CDS) from alignment at CM002460.1:1117562..1119062-

>rna3249 ID=rna3249|Name=rna3249|organism=Nannochloropsis gaditana|type=CDS|length=749bp|location=Sequence derived from alignment at CM002460.1:1117562..1119062- (Nannochloropsis gaditana)
ATGCGGAAAGGCGTCTGCAAAGGCACATCCGAGCTTCGCTCCGACGGAAA
GCCAACGCGTGGAAAAGTAAGAGGTGGTCCAGTCCCTTCTGCACCGAGCG
CTGTGCCTGTAGCCGTGTCGCGCCCGTACCACTACGCGACCCGGAGTCTC
TGCCCCCTCCCAGACCATCCCCCCAGCCCCATCCGAGGCCGCGTCCGTCG
AGTTTCCTCGGAACCACAAGCACGACGAGGGGATACAGGTGATCCCACCC
ATGGCGCAGACGGCGTTCCCGCGAAAGTCCCGCGCGCATGCCCCCGTCCA
CGGCGACGGAGGAAAGACACGGGGGCCTCGCCGCTTCGAAGGGAGACGAC
TCCTTGCCTGGTCCCTCCCTCCCTCCCTCCCGTCTTCACCCCACCCGATT
TCTCAGGGAGGGACAAAGGTTGCACTTGCACCGTTGTGCCGCGGCCGCAG
TCCCCGCCCCACACCCCTCCGGTGCCGCCGAGTGAGGCGCTCCATGCCTC
TGCCCCCGCGCGACGGGAACGGCTGGGAGGGAGCGGCTCCCAGTGCGGAA
GCGAGGTCACCACGGAGACCGAAAAATGCCGAGAGGGGGTCGGAGCTACC
CTTGAGGAGCATACGGACTCACACGAGCTGGCAACGACCAGTTCCTTTCC
CGAGGCGTCGCGCTCCTTCCTCTTCGCCTTCCCTCCCTCCCTCCCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
back to top
Synonyms
Publications