EWM27432.1, cds3240 (CDS) Nannochloropsis gaditana

Overview
NameEWM27432.1
Unique Namecds3240
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1117562..1118310 -

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Properties
Property NameValue
Start range1117562
Start range.
Protein idEWM27432.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101109g1.2595.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1117562..1118310 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27432.1 vs. NCBI_GenBank
Match: gi|585109679|gb|EWM27432.1| (hypothetical protein Naga_101109g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 2.584e-171
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 
Query:    1 MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSLCPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPAKVPRACPRPRRRRKDTGASPLRRETTPCLVPPSLPPVFTPPDFSGRDKGCTCTVVPRPQSPPHTPPVPPSEALHASAPARRERLGGSGSQCGSEVTTETEKCREGVGATLEEHTDSHELATTSSFPEASRSFLFAFPPSLPLSLSLSLSLSLSLSLSLS 250
            MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSLCPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPAKVPRACPRPRRRRKDTGASPLRRETTPCLVPPSLPPVFTPPDFSGRDKGCTCTVVPRPQSPPHTPPVPPSEALHASAPARRERLGGSGSQCGSEVTTETEKCREGVGATLEEHTDSHELATTSSFPEASRSFLFAFPPSLPLSLSLSLSLSLSLSLSLS
Sbjct:    1 MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSLCPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPAKVPRACPRPRRRRKDTGASPLRRETTPCLVPPSLPPVFTPPDFSGRDKGCTCTVVPRPQSPPHTPPVPPSEALHASAPARRERLGGSGSQCGSEVTTETEKCREGVGATLEEHTDSHELATTSSFPEASRSFLFAFPPSLPLSLSLSLSLSLSLSLSLS 250
[Close]
BLAST of EWM27432.1 vs. NCBI_GenBank
Match: gi|553187308|ref|XP_005854582.1| (hypothetical protein NGA_0241000, partial [Nannochloropsis gaditana CCMP526] >gi|422294482|gb|EKU21782.1| hypothetical protein NGA_0241000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 179.874 bits (455), Expect = 1.269e-54
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 
Query:    1 MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSLCPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPA 91
            MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSLCPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPA
Sbjct:    1 MRKGVCKGTSELRSDGKPTRGKVRGGPVPSAPSAVPVAVSRPYHYATRSLCPLPDHPPSPIRGRVRRVSSEPQARRGDTGDPTHGADGVPA 91
The following BLAST results are available for this feature:
BLAST of EWM27432.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109679|gb|EWM27432.1|2.584e-171100.00hypothetical protein Naga_101109g1, partial [Nanno... [more]
gi|553187308|ref|XP_005854582.1|1.269e-54100.00hypothetical protein NGA_0241000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3249rna3249Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications