rna3247, rna3247 (mRNA) Nannochloropsis gaditana

Overview
Namerna3247
Unique Namerna3247
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1178
Alignment locationCM002460.1:1114542..1115629 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100482g2.2387.mrna
Orig protein idgnl|cribi|Naga_100482g2.2387
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1114542..1115629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100482g2gene3125Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27437.1cds3238Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3247rna3247-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3247 ID=rna3247|Name=rna3247|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp
CCTTCACGACGCTCACTTTCGTGCCTTACGCCTCACAAAATCAGGCATAC
ATACATAGATACATACCGAATCCTCCATAAAGCGCGAGTCAGGGGCTCTT
AGGCACAAGGTTGCTTCACCTAATATAAGAAACGATAATGCCTCCAAAGG
CGAAAGCAAACAAGAAAGCCGATACAAAAAGGGCCGAAAAACTGATAGAA
GACAAGACATTTGGCCTCAAAAACAAGAACAAGAGTAAAAAGGTCCAGCA
ATATGTGCAAGCAGTGACCACGCAGACGAAACACAACATCGGCGTCAAAA
CCGAGGCAGAAAAAGCGGCGGCTGCCAAAGCCAAGAAAGAAGCCAAGGAG
AAGGAGGATGTGGAGCTGAAGCTGTTGTTCATGCAGATGCAAGCTGGCGC
GGGCAAGACGAGCAAGGCGATGGAAGCAGCGGCAGAAGCCCAGAAGGCGA
AAAGGGAAGCGGCCATGAAGGCCAAAGGCGGTCAAGGGGCCGCGCAGTGG
ATCGAGATCGACATGACCGGGAAGCCGTTGGAGGAGGTCATCGAGTACGA
GCGGCAGAAGCTGGCCTTCTTCAAGAAGAATGTGACGCCGGTGACGGAGG
AGTCGTTCGCGCGCTGGAAGAAGGAGAAGGCGGAGAAGAGGAAACGAGAG
AACGCAGAGAAGGTGAAGGCAGAGATCGCCAAGAAGACAAAGGGGAAAGG
TCTGAGCGTTTTGAGTGGAAAGGCTCTCTTTGAATACGATGCCGCCCTGT
TCGTTGATGACGAGGAGGCGGGGGAGGAGCAGGTGGACGTGAAGAAGTTG
AGGTCTCTGATGGAAGAGGAAGAGGATAGGGACGGAGAAGGGGAAGAGGG
GCTGGCAGTGGCGGTACAGGAGAGTTTGTATCTGGAAGGGGAGGGGGAGG
ATGACGATTTGGACGATTTAGAAGACGAGGAGGAGGAGGAGGAGGAGGCG
GAGGGGGAGGGGGGGGGCGCGGCGGGGGAGGGGGAAAAAACTGGGTAAGA
AGATATAGAGTGTACAGGGGATTAGGGAGAGGCGCTACTCGTCCGCATGG
AGCTGTCAAGGCCGTGGGAGAGGAGGCATGGAGGGAGGGATGGGAAGGGG
GAAGGGTATCGTAGAGCAAAGTTCTGCTGCAGTTAAGAACAAAATGTTCG
CGCTTAAGAATGATGAATTCTCCATGAC
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protein sequence of rna3247

>rna3247-protein ID=rna3247-protein|Name=rna3247|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MDLEPNSPQVFVNDCNNEEESPPFSPLDSLPQVPSPLPSPASPVMASHIL
KSVRLEKLVLLPSVVMISWAAWHSSSSFFPSYGALPLLLFLVTTIYLLSV
SRFASSFNLFSAPLSQRLTKADKKAIKYANAKKRLKHTRQKYHRKKSQIY
KELTEEERAIVKAGIVAREEERAARFAAVLAVDAPWLRAREKGSSPRQGG
SLPFPKNPAMGSPWEADQNEEADRRQEASLAAPPPSFPPSLPRHLRIALD
LHYGERIHGIRGTRSLTQQVGWCYHALKRASSFDNTPIFHVTSFQGPTAE
VLRGSGVHNWPIYRHAASVVEVFPRPSIVYLTPDADQVLAAPLDLSKGEL
VPWEG
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mRNA from alignment at CM002460.1:1114542..1115629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3247 ID=rna3247|Name=rna3247|organism=Nannochloropsis gaditana|type=mRNA|length=1088bp|location=Sequence derived from alignment at CM002460.1:1114542..1115629- (Nannochloropsis gaditana)
CATGGATCTGGAACCCAACTCTCCACAAGTTTTTGTGAATGATTGCAATA
ATGAGGAAGAGTCCCCTCCTTTTTCTCCGCTCGATTCCCTCCCACAAGTT
CCATCACCATTGCCCAGCCCTGCCTCCCCCGTGATGGCTTCGCACATCTT
GAAGTCTGTCAGGCTTGAGAAACTTGTACTCCTTCCATCCGTCGTCATGA
TATCGTGGGCTGCCTGGCACTCGTCGTCGTCCTTCTTCCCTTCTTACGGA
GCCCTCCCTCTTCTTCTTTTCCTTGTCACGACCATTTATCTCCTGTCCGT
GTCTCGTTTCGCATCAAGCTTCAATCTGTTCTCAGCACCATTATCACAGC
GCCTAACAAAGGCCGACAAGAAAGCAATCAAATATGCCAACGCCAAGAAA
CGGCTCAAACACACCCGCCAAAAGTACCATCGGAAGAAGTCTCAAATCTA
CAAGGAGTTGACGGAGGAGGAACGAGCGATCGTCAAGGCGGGGATAGTAG
CTAGGGAGGAAGAGAGAGCGGCGAGATTTGCAGCTGTATTGGCGGTCGAT
GCACCGTGGTTAAGAGCGCGGGAGAAAGGCTCGAGCCCAAGACAAGGAGG
GTCGCTTCCTTTCCCTAAGAACCCGGCGATGGGAAGCCCGTGGGAGGCGG
ACCAAAACGAAGAGGCCGACAGACGACAAGAGGCATCCCTAGCTGCCCCC
CCTCCCTCCTTCCCTCCCTCCCTTCCCCGTCACCTTCGCATCGCCCTAGA
CCTGCACTACGGGGAACGCATCCACGGCATCCGTGGCACCCGCTCTCTCA
CCCAGCAAGTGGGATGGTGCTACCACGCCCTGAAACGCGCGTCCTCTTTC
GACAACACCCCTATTTTCCACGTCACTTCTTTCCAAGGGCCCACTGCCGA
GGTCCTGCGCGGGTCTGGCGTTCACAACTGGCCCATCTACAGGCATGCGG
CCTCCGTGGTGGAGGTTTTCCCCCGCCCGTCCATCGTCTACCTGACGCCC
GATGCCGACCAGGTGCTCGCGGCTCCTTTGGACTTGAGCAAAGGTGAGCT
TGTGCCCTGGGAGGGGTAGACCCGCCTGTTGGGCTTCG
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Coding sequence (CDS) from alignment at CM002460.1:1114542..1115629-

>rna3247 ID=rna3247|Name=rna3247|organism=Nannochloropsis gaditana|type=CDS|length=1068bp|location=Sequence derived from alignment at CM002460.1:1114542..1115629- (Nannochloropsis gaditana)
ATGGATCTGGAACCCAACTCTCCACAAGTTTTTGTGAATGATTGCAATAA
TGAGGAAGAGTCCCCTCCTTTTTCTCCGCTCGATTCCCTCCCACAAGTTC
CATCACCATTGCCCAGCCCTGCCTCCCCCGTGATGGCTTCGCACATCTTG
AAGTCTGTCAGGCTTGAGAAACTTGTACTCCTTCCATCCGTCGTCATGAT
ATCGTGGGCTGCCTGGCACTCGTCGTCGTCCTTCTTCCCTTCTTACGGAG
CCCTCCCTCTTCTTCTTTTCCTTGTCACGACCATTTATCTCCTGTCCGTG
TCTCGTTTCGCATCAAGCTTCAATCTGTTCTCAGCACCATTATCACAGCG
CCTAACAAAGGCCGACAAGAAAGCAATCAAATATGCCAACGCCAAGAAAC
GGCTCAAACACACCCGCCAAAAGTACCATCGGAAGAAGTCTCAAATCTAC
AAGGAGTTGACGGAGGAGGAACGAGCGATCGTCAAGGCGGGGATAGTAGC
TAGGGAGGAAGAGAGAGCGGCGAGATTTGCAGCTGTATTGGCGGTCGATG
CACCGTGGTTAAGAGCGCGGGAGAAAGGCTCGAGCCCAAGACAAGGAGGG
TCGCTTCCTTTCCCTAAGAACCCGGCGATGGGAAGCCCGTGGGAGGCGGA
CCAAAACGAAGAGGCCGACAGACGACAAGAGGCATCCCTAGCTGCCCCCC
CTCCCTCCTTCCCTCCCTCCCTTCCCCGTCACCTTCGCATCGCCCTAGAC
CTGCACTACGGGGAACGCATCCACGGCATCCGTGGCACCCGCTCTCTCAC
CCAGCAAGTGGGATGGTGCTACCACGCCCTGAAACGCGCGTCCTCTTTCG
ACAACACCCCTATTTTCCACGTCACTTCTTTCCAAGGGCCCACTGCCGAG
GTCCTGCGCGGGTCTGGCGTTCACAACTGGCCCATCTACAGGCATGCGGC
CTCCGTGGTGGAGGTTTTCCCCCGCCCGTCCATCGTCTACCTGACGCCCG
ATGCCGACCAGGTGCTCGCGGCTCCTTTGGACTTGAGCAAAGGTGAGCTT
GTGCCCTGGGAGGGGTAG
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Synonyms
Publications