rna3245, rna3245 (mRNA) Nannochloropsis gaditana

Overview
Namerna3245
Unique Namerna3245
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length713
Alignment locationCM002460.1:1109039..1110528 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100482g4.2388.mrna
Orig protein idgnl|cribi|Naga_100482g4.2388
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1109039..1110528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100482g4gene3123Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3245rna3245-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27438.1cds3236Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3245 ID=rna3245|Name=rna3245|organism=Nannochloropsis gaditana|type=mRNA|length=713bp
ATGCGTTCAAGACTCAAGCGGGCAGAAATAAGACGTCGCGGCGGGTATGG
ATGCTTACTTGCGACAGCAGTGGTTGCTGTGGAGTTGGTGTCGAAAGCAA
GTGCCTTTGGGAGCGGGAAGCTTTCCCTCTTTGCGCAGCCACTGACCCGT
CCACGACCACCCAAACACCGTGTGTTTTCCAGTCTCTCATCTTCTACACC
CGATCCACCTCCCTTGCGGACTTTGCTGATCGACAATTACGACAGCTACA
CGCACAACTTGGCACATTACCTGGCTGAGGTGAACCACGGCGTCCCCCCC
ACTATCATCTACAACGACGCCTTCCAAGGCAATTGGACCCGCCTCCTCGC
TGCCTACCGCCTTCCCAATTCCACCCTATTCCCCTTCGACAACATTGTCA
TCTCCCCGGGGCCGGGATCCCCCGAGAAAGCCTCGGACTTCGGGCTTTCT
CGGTTAGCCCTCGACCTGGACTCTGTCCCCATCCTGGGCGTCTGCCTTGG
GCACCAAGGCCTTGGATACCTCCATGGAGGGCGGGTGATACGCGCTCCTT
GTGGGCCTATGCACGGACGCCTCTCTCAGATCACCCACACGGGCCGCGGC
ATCTTCCAGAACCTTCCACAAGATTTTCCCGCCGTCCGCTACCATTCCTT
GGTGGTGGAGCCCCCCCCGGGAAGGGAAAAAAGGAGGGAGGGAGGGAGGG
AGGGGGCGAGGGT
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protein sequence of rna3245

>rna3245-protein ID=rna3245-protein|Name=rna3245|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MVQLRKREVPSGHSSGILRPIPILYPFLFFTVCLPIFTNALGFQDIRDGF
VGASDDIKEGLSGLRLPGMCAYYDPIHDRCHVDSKNGVRTEVAGRCSESM
RGIIPTCSGHLDAYSPPQPDSMPAPATPVEVDATGNIEQPPSLPPSPPSE
PSPPKPPVRAPPEKDAARVPSSPFPKIPPFWKNRDRDPTKGPEEGDHDQG
ADPKPGGMKGFALFAVLIGAAILAAVLSVTGVGYYAYHTRRKAWRRQEQL
LQARQARAQARISYAETSPQVVTPRSLGL
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mRNA from alignment at CM002460.1:1109039..1110528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3245 ID=rna3245|Name=rna3245|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp|location=Sequence derived from alignment at CM002460.1:1109039..1110528- (Nannochloropsis gaditana)
ATGGTGCAGCTGAGGAAGAGGGAGGTCCCTTCCGGGCACAGCAGCGGAAT
TCTCCGGCCCATTCCTATCCTGTATCCCTTCCTCTTTTTCACTGTATGCT
TGCCGATCTTCACAAATGCATTGGGCTTCCAAGACATACGTGATGGATTT
GTGGGTGCGTCGGATGATATAAAGGAAGGCTTAAGCGGGCTGCGGCTCCC
CGGGATGTGCGCGTAAGTGTGGGTTACCTCCTGAACATCGATTTTGTCGT
CGGTGCGACAAATGCATTTTCTGTGAGAATCTCCATTGTCTTCATGGATT
CTTCGTGGTACATTTCCATAAAAGCTATATACCTGCATCACAGCTCACTC
AAACTTTTCCATGGACATACCCACCCTCGCGCTTTAATACCTGTCGCCCG
CGCACACTCGAACAATGGGGCATAAATTTGCTGCACTCTAGCCATCTCGG
TGTACATACCTGCCCAAATACGTCATTTTTTCTCAACAAATGCCCCTTTT
TTGAAAAAATAGATACTACGACCCCATCCACGACCGCTGCCATGTGGATA
GCAAGAATGGTGTGCGCACCGAGGTGGCAGGCCGGTGCTCGGAGAGTATG
AGGGGCATAATTCCTACCTGCAGTGGTCATTTGGATGCTTATTCGCCACC
ACAACCAGACTCTATGCCCGCCCCAGCAACGCCAGTGGAAGTGGACGCCA
CTGGCAATATTGAACAACCACCGTCGCTTCCCCCATCTCCACCATCCGAG
GTCAGCGTGCCGATTTTTATTTACTTTTCCTAGCGCTTTGTACGATTCTT
GAATTCTGAATAAACCTCCACCTGACCAATCCATCCCCGCCATAAATCCT
CACCGCGTCGATTCCATGACCCCTTTATCCGACCTCTTTTAAACCCAGCC
ATCCCCTCCCAAGCCGCCCGTCCGAGCGCCTCCTGAGAAAGACGCCGCCA
GAGTTCCATCCTCTCCTTTCCCCAAGATCCCTCCATTCTGGAAGAACAGA
GACAGAGATCCAACCAAAGGACCCGAGGAAGGAGATCATGACCAAGGGGC
GGACCCAAAACCTGGAGGCATGAAAGGTTTTGCCTTGTTTGCCGTACTCA
TTGGGGCAGCGATCCTCGCAGCCGTACTCTCAGTTACGGGCGTCGGATAC
TACGCCTATCACACTCGGAGAAAAGCCTGGCGACGTCAAGGTGCGTCCTA
GGAGGACTCCTAACGGCACATGAGGCTCCGGGGAGGTTAGGCCGTACCTT
ATATGATATATGTGTAGGCCGGAAAATCTGATCTTCGTAGAGGGGACAAT
CACAGTATTTACATGTATCGCTTACTGCTCGTGGTCGGTTTCCTTCCCGT
CTTTCAAACATTTCAATACAATACAATCTTCGTGATTAACAGAACAACTT
TTGCAAGCAAGGCAAGCACGGGCGCAGGCGCGTATAAGTTATGCTGAGAC
TTCGCCGCAGGTGGTCACTCCCCGCTCTCTTGGATTGTAA
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Coding sequence (CDS) from alignment at CM002460.1:1109039..1110528-

>rna3245 ID=rna3245|Name=rna3245|organism=Nannochloropsis gaditana|type=CDS|length=3360bp|location=Sequence derived from alignment at CM002460.1:1109039..1110528- (Nannochloropsis gaditana)
AACAACTTTTGCAAGCAAGGCAAGCACGGGCGCAGGCGCGTATAAGTTAT
GCTGAGACTTCGCCGCAGGTGGTCACTCCCCGCTCTCTTGGATTGTAACC
ATCCCCTCCCAAGCCGCCCGTCCGAGCGCCTCCTGAGAAAGACGCCGCCA
GAGTTCCATCCTCTCCTTTCCCCAAGATCCCTCCATTCTGGAAGAACAGA
GACAGAGATCCAACCAAAGGACCCGAGGAAGGAGATCATGACCAAGGGGC
GGACCCAAAACCTGGAGGCATGAAAGGTTTTGCCTTGTTTGCCGTACTCA
TTGGGGCAGCGATCCTCGCAGCCGTACTCTCAGTTACGGGCGTCGGATAC
TACGCCTATCACACTCGGAGAAAAGCCTGGCGACGTCAAGATACTACGAC
CCCATCCACGACCGCTGCCATGTGGATAGCAAGAATGGTGTGCGCACCGA
GGTGGCAGGCCGGTGCTCGGAGAGTATGAGGGGCATAATTCCTACCTGCA
GTGGTCATTTGGATGCTTATTCGCCACCACAACCAGACTCTATGCCCGCC
CCAGCAACGCCAGTGGAAGTGGACGCCACTGGCAATATTGAACAACCACC
GTCGCTTCCCCCATCTCCACCATCCGAGATGGTGCAGCTGAGGAAGAGGG
AGGTCCCTTCCGGGCACAGCAGCGGAATTCTCCGGCCCATTCCTATCCTG
TATCCCTTCCTCTTTTTCACTGTATGCTTGCCGATCTTCACAAATGCATT
GGGCTTCCAAGACATACGTGATGGATTTGTGGGTGCGTCGGATGATATAA
AGGAAGGCTTAAGCGGGCTGCGGCTCCCCGGGATGTGCGCAACAACTTTT
GCAAGCAAGGCAAGCACGGGCGCAGGCGCGTATAAGTTATGCTGAGACTT
CGCCGCAGGTGGTCACTCCCCGCTCTCTTGGATTGTAACCATCCCCTCCC
AAGCCGCCCGTCCGAGCGCCTCCTGAGAAAGACGCCGCCAGAGTTCCATC
CTCTCCTTTCCCCAAGATCCCTCCATTCTGGAAGAACAGAGACAGAGATC
CAACCAAAGGACCCGAGGAAGGAGATCATGACCAAGGGGCGGACCCAAAA
CCTGGAGGCATGAAAGGTTTTGCCTTGTTTGCCGTACTCATTGGGGCAGC
GATCCTCGCAGCCGTACTCTCAGTTACGGGCGTCGGATACTACGCCTATC
ACACTCGGAGAAAAGCCTGGCGACGTCAAGATACTACGACCCCATCCACG
ACCGCTGCCATGTGGATAGCAAGAATGGTGTGCGCACCGAGGTGGCAGGC
CGGTGCTCGGAGAGTATGAGGGGCATAATTCCTACCTGCAGTGGTCATTT
GGATGCTTATTCGCCACCACAACCAGACTCTATGCCCGCCCCAGCAACGC
CAGTGGAAGTGGACGCCACTGGCAATATTGAACAACCACCGTCGCTTCCC
CCATCTCCACCATCCGAGATGGTGCAGCTGAGGAAGAGGGAGGTCCCTTC
CGGGCACAGCAGCGGAATTCTCCGGCCCATTCCTATCCTGTATCCCTTCC
TCTTTTTCACTGTATGCTTGCCGATCTTCACAAATGCATTGGGCTTCCAA
GACATACGTGATGGATTTGTGGGTGCGTCGGATGATATAAAGGAAGGCTT
AAGCGGGCTGCGGCTCCCCGGGATGTGCGCAACAACTTTTGCAAGCAAGG
CAAGCACGGGCGCAGGCGCGTATAAGTTATGCTGAGACTTCGCCGCAGGT
GGTCACTCCCCGCTCTCTTGGATTGTAACCATCCCCTCCCAAGCCGCCCG
TCCGAGCGCCTCCTGAGAAAGACGCCGCCAGAGTTCCATCCTCTCCTTTC
CCCAAGATCCCTCCATTCTGGAAGAACAGAGACAGAGATCCAACCAAAGG
ACCCGAGGAAGGAGATCATGACCAAGGGGCGGACCCAAAACCTGGAGGCA
TGAAAGGTTTTGCCTTGTTTGCCGTACTCATTGGGGCAGCGATCCTCGCA
GCCGTACTCTCAGTTACGGGCGTCGGATACTACGCCTATCACACTCGGAG
AAAAGCCTGGCGACGTCAAGATACTACGACCCCATCCACGACCGCTGCCA
TGTGGATAGCAAGAATGGTGTGCGCACCGAGGTGGCAGGCCGGTGCTCGG
AGAGTATGAGGGGCATAATTCCTACCTGCAGTGGTCATTTGGATGCTTAT
TCGCCACCACAACCAGACTCTATGCCCGCCCCAGCAACGCCAGTGGAAGT
GGACGCCACTGGCAATATTGAACAACCACCGTCGCTTCCCCCATCTCCAC
CATCCGAGATGGTGCAGCTGAGGAAGAGGGAGGTCCCTTCCGGGCACAGC
AGCGGAATTCTCCGGCCCATTCCTATCCTGTATCCCTTCCTCTTTTTCAC
TGTATGCTTGCCGATCTTCACAAATGCATTGGGCTTCCAAGACATACGTG
ATGGATTTGTGGGTGCGTCGGATGATATAAAGGAAGGCTTAAGCGGGCTG
CGGCTCCCCGGGATGTGCGCAACAACTTTTGCAAGCAAGGCAAGCACGGG
CGCAGGCGCGTATAAGTTATGCTGAGACTTCGCCGCAGGTGGTCACTCCC
CGCTCTCTTGGATTGTAACCATCCCCTCCCAAGCCGCCCGTCCGAGCGCC
TCCTGAGAAAGACGCCGCCAGAGTTCCATCCTCTCCTTTCCCCAAGATCC
CTCCATTCTGGAAGAACAGAGACAGAGATCCAACCAAAGGACCCGAGGAA
GGAGATCATGACCAAGGGGCGGACCCAAAACCTGGAGGCATGAAAGGTTT
TGCCTTGTTTGCCGTACTCATTGGGGCAGCGATCCTCGCAGCCGTACTCT
CAGTTACGGGCGTCGGATACTACGCCTATCACACTCGGAGAAAAGCCTGG
CGACGTCAAGATACTACGACCCCATCCACGACCGCTGCCATGTGGATAGC
AAGAATGGTGTGCGCACCGAGGTGGCAGGCCGGTGCTCGGAGAGTATGAG
GGGCATAATTCCTACCTGCAGTGGTCATTTGGATGCTTATTCGCCACCAC
AACCAGACTCTATGCCCGCCCCAGCAACGCCAGTGGAAGTGGACGCCACT
GGCAATATTGAACAACCACCGTCGCTTCCCCCATCTCCACCATCCGAGAT
GGTGCAGCTGAGGAAGAGGGAGGTCCCTTCCGGGCACAGCAGCGGAATTC
TCCGGCCCATTCCTATCCTGTATCCCTTCCTCTTTTTCACTGTATGCTTG
CCGATCTTCACAAATGCATTGGGCTTCCAAGACATACGTGATGGATTTGT
GGGTGCGTCGGATGATATAAAGGAAGGCTTAAGCGGGCTGCGGCTCCCCG
GGATGTGCGC
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Synonyms
Publications