EWM27438.1, cds3236 (CDS) Nannochloropsis gaditana

Overview
NameEWM27438.1
Unique Namecds3236
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1110317..1110528 -
Alignment locationCM002460.1:1109779..1110016 -
Alignment locationCM002460.1:1109339..1109630 -
Alignment locationCM002460.1:1109039..1109136 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27438.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100482g4.2388.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1110317..1110528 -
CM002460.1supercontigCM002460.1:1109779..1110016 -
CM002460.1supercontigCM002460.1:1109339..1109630 -
CM002460.1supercontigCM002460.1:1109039..1109136 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM27438.1 vs. NCBI_GenBank
Match: gi|553178539|ref|XP_005852568.1| (hypothetical protein NGA_0702900 [Nannochloropsis gaditana CCMP526] >gi|422295965|gb|EKU23264.1| hypothetical protein NGA_0702900 [Nannochloropsis gaditana CCMP526] >gi|585109686|gb|EWM27438.1| hypothetical protein Naga_100482g4 [Nannochloropsis gaditana])

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0 
Query:    1 MVQLRKREVPSGHSSGILRPIPILYPFLFFTVCLPIFTNALGFQDIRDGFVGASDDIKEGLSGLRLPGMCAYYDPIHDRCHVDSKNGVRTEVAGRCSESMRGIIPTCSGHLDAYSPPQPDSMPAPATPVEVDATGNIEQPPSLPPSPPSEPSPPKPPVRAPPEKDAARVPSSPFPKIPPFWKNRDRDPTKGPEEGDHDQGADPKPGGMKGFALFAVLIGAAILAAVLSVTGVGYYAYHTRRKAWRRQEQLLQARQARAQARISYAETSPQVVTPRSLGL 279
            MVQLRKREVPSGHSSGILRPIPILYPFLFFTVCLPIFTNALGFQDIRDGFVGASDDIKEGLSGLRLPGMCAYYDPIHDRCHVDSKNGVRTEVAGRCSESMRGIIPTCSGHLDAYSPPQPDSMPAPATPVEVDATGNIEQPPSLPPSPPSEPSPPKPPVRAPPEKDAARVPSSPFPKIPPFWKNRDRDPTKGPEEGDHDQGADPKPGGMKGFALFAVLIGAAILAAVLSVTGVGYYAYHTRRKAWRRQEQLLQARQARAQARISYAETSPQVVTPRSLGL
Sbjct:    1 MVQLRKREVPSGHSSGILRPIPILYPFLFFTVCLPIFTNALGFQDIRDGFVGASDDIKEGLSGLRLPGMCAYYDPIHDRCHVDSKNGVRTEVAGRCSESMRGIIPTCSGHLDAYSPPQPDSMPAPATPVEVDATGNIEQPPSLPPSPPSEPSPPKPPVRAPPEKDAARVPSSPFPKIPPFWKNRDRDPTKGPEEGDHDQGADPKPGGMKGFALFAVLIGAAILAAVLSVTGVGYYAYHTRRKAWRRQEQLLQARQARAQARISYAETSPQVVTPRSLGL 279
The following BLAST results are available for this feature:
BLAST of EWM27438.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553178539|ref|XP_005852568.1|0.000e+0100.00hypothetical protein NGA_0702900 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3245rna3245Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications