rna3244, rna3244 (mRNA) Nannochloropsis gaditana

Overview
Namerna3244
Unique Namerna3244
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1306
Alignment locationCM002460.1:1107614..1108326 -

Link to JBrowse

Properties
Property NameValue
Productpara-aminobenzoate synthase
Orig transcript idgnl|cribi|Naga_100482g5.2384.mrna
Orig protein idgnl|cribi|Naga_100482g5.2384
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1107614..1108326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100482g5gene3122Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27434.1cds3235Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3244rna3244-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3244 ID=rna3244|Name=rna3244|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp
GCCCCCCTGGTCACTCCCCTGGAGTACAAGGACCGCGTGGACCGATGCAT
GGAGCTGATCTCGGCCGGGGAGACGTACGAAGTCTGTCTGACCGGGCAAC
TGGCAGCCCCCCTCCCCCCCTCCCTCGATCCCTTCCTCCTCTATACCCAG
TTACGGCGCGAGAACCCGGCCCCGTTCTCGGGCTTCTGGCGGCATGACCC
GAGGCGTCAGCTCCGCCCCCGCGGGGCCGACGAGGGAGAGGGCGAGGGGG
GACTGAGTCCGGGAGTCCTACCCTCCACGTTGCCGGTGGGCGAGCCCGGA
CTCTCCTCAGCCGTGGCAGGCCGTGGGCGATCCCGTCTATCGACCCTCGC
CCCCGCCATTGCCCTCTGTTGCTCCTCCCCTGAACGATTTCTGCGGGTGG
CACGCGCCAACGGGGTGGTGGAGTCGAAGCCCATCAAAGGCACCGTCCGA
AGGGGTCAGACCCCGGCTGAAGATGCCCGTTTGGCGGCCGGTCTGGCTGC
ATGCGAGAAGAACCGGGCGGAGAATTTGATGATCGTGGATCTGGTCCGCA
ACGACATTTCCCGCGTGACCCGTCCGGGCTCGGTTCAAGTGCCGCGACTC
ATGGCAGTGGAATCCTACGCCACTGTGCATCAACTTGTCTCCACCATCAC
CGGCGTGCTGGACGAAGGGAAGGATGCCATCGACGCCGTGATCGCCGCTT
TCCCCGGGGGATCCATGACGGGGGCGCCCAAGAAGCGGACGATGGAGATC
ATTGATCGGCTGGAGGGAGGACAGGCCCGAGGTCCCTACAGCGGGGCGCT
TGGGTACATCGCCATGGACGGTCTCGCCGCCGATCTGAACATCGTGATTC
GTACTGCCGTTTGTGCACCGGGCATAGTAACGGTCGGGGCAGGAGGCGCC
ATTGTCGCCCTGTCGGATAGGGAGAAGGAATACGAAGAGATGATGCTGAA
AGCACGGGCAGTCGCGGGGGCGGTTGGTGGGAGACGGTCGGGGGAGGAGA
AAGAAGAGGAGGAAGGAAGGGAGGGAGCGGGGGTGGAGTTGGAGATGGAA
GATATGCTGCTTGTACAGTGATTTATGAGATTGGAGGGAGAGATATCAGG
CGGGAAGGCTGAAATGTGCGTCGGGTAGAATACATTCACAGATAGTTGGA
TAGGTGGAGGGTTGGAGCGCGTACAGGTAATCGTGTAGAGTAAGGTTGCC
CGAAAAGTGTGACCAGGAAAAAGATTTTGCCAACGGGGCGAGAAAGGGAG
CGACCGAGACTCGCGAAGCCCACAAACACACCATGTACCTTAATAAAATA
TTCACA
back to top

protein sequence of rna3244

>rna3244-protein ID=rna3244-protein|Name=rna3244|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MRSRLKRAEIRRRGGYGCLLATAVVAVELVSKASAFGSGKLSLFAQPLTR
PRPPKHRVFSSLSSSTPDPPPLRTLLIDNYDSYTHNLAHYLAEVNHGVPP
TIIYNDAFQGNWTRLLAAYRLPNSTLFPFDNIVISPGPGSPEKASDFGLS
RLALDLDSVPILGVCLGHQGLGYLHGGRVIRAPCGPMHGRLSQITHTGRG
IFQNLPQDFPAVRYHSLVVEPPPGREKRREGGREGARV
back to top

mRNA from alignment at CM002460.1:1107614..1108326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3244 ID=rna3244|Name=rna3244|organism=Nannochloropsis gaditana|type=mRNA|length=713bp|location=Sequence derived from alignment at CM002460.1:1107614..1108326- (Nannochloropsis gaditana)
ATGCGTTCAAGACTCAAGCGGGCAGAAATAAGACGTCGCGGCGGGTATGG
ATGCTTACTTGCGACAGCAGTGGTTGCTGTGGAGTTGGTGTCGAAAGCAA
GTGCCTTTGGGAGCGGGAAGCTTTCCCTCTTTGCGCAGCCACTGACCCGT
CCACGACCACCCAAACACCGTGTGTTTTCCAGTCTCTCATCTTCTACACC
CGATCCACCTCCCTTGCGGACTTTGCTGATCGACAATTACGACAGCTACA
CGCACAACTTGGCACATTACCTGGCTGAGGTGAACCACGGCGTCCCCCCC
ACTATCATCTACAACGACGCCTTCCAAGGCAATTGGACCCGCCTCCTCGC
TGCCTACCGCCTTCCCAATTCCACCCTATTCCCCTTCGACAACATTGTCA
TCTCCCCGGGGCCGGGATCCCCCGAGAAAGCCTCGGACTTCGGGCTTTCT
CGGTTAGCCCTCGACCTGGACTCTGTCCCCATCCTGGGCGTCTGCCTTGG
GCACCAAGGCCTTGGATACCTCCATGGAGGGCGGGTGATACGCGCTCCTT
GTGGGCCTATGCACGGACGCCTCTCTCAGATCACCCACACGGGCCGCGGC
ATCTTCCAGAACCTTCCACAAGATTTTCCCGCCGTCCGCTACCATTCCTT
GGTGGTGGAGCCCCCCCCGGGAAGGGAAAAAAGGAGGGAGGGAGGGAGGG
AGGGGGCGAGGGT
back to top

Coding sequence (CDS) from alignment at CM002460.1:1107614..1108326-

>rna3244 ID=rna3244|Name=rna3244|organism=Nannochloropsis gaditana|type=CDS|length=713bp|location=Sequence derived from alignment at CM002460.1:1107614..1108326- (Nannochloropsis gaditana)
ATGCGTTCAAGACTCAAGCGGGCAGAAATAAGACGTCGCGGCGGGTATGG
ATGCTTACTTGCGACAGCAGTGGTTGCTGTGGAGTTGGTGTCGAAAGCAA
GTGCCTTTGGGAGCGGGAAGCTTTCCCTCTTTGCGCAGCCACTGACCCGT
CCACGACCACCCAAACACCGTGTGTTTTCCAGTCTCTCATCTTCTACACC
CGATCCACCTCCCTTGCGGACTTTGCTGATCGACAATTACGACAGCTACA
CGCACAACTTGGCACATTACCTGGCTGAGGTGAACCACGGCGTCCCCCCC
ACTATCATCTACAACGACGCCTTCCAAGGCAATTGGACCCGCCTCCTCGC
TGCCTACCGCCTTCCCAATTCCACCCTATTCCCCTTCGACAACATTGTCA
TCTCCCCGGGGCCGGGATCCCCCGAGAAAGCCTCGGACTTCGGGCTTTCT
CGGTTAGCCCTCGACCTGGACTCTGTCCCCATCCTGGGCGTCTGCCTTGG
GCACCAAGGCCTTGGATACCTCCATGGAGGGCGGGTGATACGCGCTCCTT
GTGGGCCTATGCACGGACGCCTCTCTCAGATCACCCACACGGGCCGCGGC
ATCTTCCAGAACCTTCCACAAGATTTTCCCGCCGTCCGCTACCATTCCTT
GGTGGTGGAGCCCCCCCCGGGAAGGGAAAAAAGGAGGGAGGGAGGGAGGG
AGGGGGCGAGGGT
back to top
Synonyms
Publications