rna3240, rna3240 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3240
Unique Name	rna3240
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:1095134..1096551 -

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Properties


Property Name	Value
Product	Ribosomal protein L18e/L15P
Orig transcript id	gnl\|cribi\|Naga_100579g2.6099.mrna
Orig protein id	gnl\|cribi\|Naga_100579g2.6099
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1095134..1096551 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100579g2	gene3118	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3240	rna3240-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27441.1	cds3231	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002460.1:1095134..1096551-
coding sequence from alignment at CM002460.1:1095134..1096551-

protein sequence of rna3240

>rna3240-protein ID=rna3240-protein|Name=rna3240|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLS
RNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILV
AHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRS
SVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLV
VPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASL
GAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLP
RRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD

mRNA from alignment at CM002460.1:1095134..1096551-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3240 ID=rna3240|Name=rna3240|organism=Nannochloropsis gaditana|type=mRNA|length=1418bp|location=Sequence derived from alignment at CM002460.1:1095134..1096551- (Nannochloropsis gaditana)
GTGGTGGGTGCAAGGAAATCGCGGCTTGCGTATGGAGGATGTTAATTCTT
GACGGGATGGTCATGGCACTGTCCATGTCTCCTCTTGGCTTGTATCCCGT
CGCGGCGTGCGTTCCTACTTCTCAATGCTTTTCATTTACACGGCACATCA
AAACCCCTCACAGAGACGGTATGCTCTCGGTGCTGTCAAGAAATCTTCGC
ACTATCGGTGGATGGGACAGAAGAAGGATAGGTGGTGTACTGCGGGCGCT
GCCCCTGCTATCTTCACAATCACCATCAAGTGGTGCGATACCACCGGGAG
AGCCGCGTATGGGAATAAGTGCCGCGTCAATTTTAGTTGCGCATTTGTCT
ACCGGCTCTTTCCTCAGTCTAAGTGACCTCCATGACAATCCAGGGGCTAA
ACGAGAGGTACGTGGACATGCACCCTTAGAGGGTAGCTTTTACCGGCCTT
TCGAATGGAAGCCACGCCTCTCAACTAAGCAGGTTCTGTTTGTCCCTAAT
TCACCACGCATTTTTTACCCCCTCTACCTGCACAGCGCAAACGCGTGGGT
CGGGGCATTGGTTCTGGATCCGGGAAAACGTCAGGCAGGGGCATGAATGG
GCAGAAGAAACGATCGAGCGTGAACATCCCCCAGGGCTTTGAAGGCGGTC
AGACGCCCATGCATCGCCGCTTGCCCAAGACAGGGTTCAAGAACATGTAC
GTACCACATGCTTGCGCGGATTCTGCGAGGGGACGGGCGAATCCTTGCGT
GTACACCTGTCTCGCACGCAACGCCGCCCGCTCTGTGGCACCTCCCGACG
CTCGTTTTCACAGCTCTCTTCCTTACCTCCACAACCTTGACGACACAGCT
GGGCGGAGCCACTGACCCCACTCCACGTTGGGACGGTGCAAAATTGGATC
GACATGGGCCGTCTCGTGGTTCCTGCCGACCGCTTGATGACCATGAAGGA
CCTGGTGGATGCCGGGATCTTCAAAGCGAACAGAGTGAAGCACGGCATCA
AGCTGTTGGCCCGAGGGGGCGAACACGTCCACACCCCTTTCCACATCGAG
GTCTCCCGGGCATCTTTGGGGGCAATCGACGCCGTGGAGAAGGCGGGGGG
AACTGTTACCTGCGTGCATTTCAACCGGCTGGCCCTGCGCGCCTTGTTGA
AACCTGAGGCGTTCCGGGTCCCCATGCTGGGGGAGGATGGCCAAGTGGAG
GAGACGTTGCAGCTGCCCAGACGGGCCCGGCCACCTCCTCGCTTGATGCC
CCTTTACCTGGATAGTGACCGGAGGGGGTACCTGTCTCCCGAGGTGCAGC
GGAGGAACAAGGACCTTTTCAACGGCCAAGTCATCAGCGAAGAGATACCC
AAGCTGGCTTTGGATTAGGCTAAACAATGCTCTATAAAGAAAAAACATGC
TCGGGAGATGTGCTGATG

Coding sequence (CDS) from alignment at CM002460.1:1095134..1096551-

>rna3240 ID=rna3240|Name=rna3240|organism=Nannochloropsis gaditana|type=CDS|length=3150bp|location=Sequence derived from alignment at CM002460.1:1095134..1096551- (Nannochloropsis gaditana)
CTGGGCGGAGCCACTGACCCCACTCCACGTTGGGACGGTGCAAAATTGGA
TCGACATGGGCCGTCTCGTGGTTCCTGCCGACCGCTTGATGACCATGAAG
GACCTGGTGGATGCCGGGATCTTCAAAGCGAACAGAGTGAAGCACGGCAT
CAAGCTGTTGGCCCGAGGGGGCGAACACGTCCACACCCCTTTCCACATCG
AGGTCTCCCGGGCATCTTTGGGGGCAATCGACGCCGTGGAGAAGGCGGGG
GGAACTGTTACCTGCGTGCATTTCAACCGGCTGGCCCTGCGCGCCTTGTT
GAAACCTGAGGCGTTCCGGGTCCCCATGCTGGGGGAGGATGGCCAAGTGG
AGGAGACGTTGCAGCTGCCCAGACGGGCCCGGCCACCTCCTCGCTTGATG
CCCCTTTACCTGGATAGTGACCGGAGGGGGTACCTGTCTCCCGAGGTGCA
GCGGAGGAACAAGGACCTTTTCAACGGCCAAGTCATCAGCGAAGAGATAC
CCAAGCTGGCTTTGGATTAGCGCAAACGCGTGGGTCGGGGCATTGGTTCT
GGATCCGGGAAAACGTCAGGCAGGGGCATGAATGGGCAGAAGAAACGATC
GAGCGTGAACATCCCCCAGGGCTTTGAAGGCGGTCAGACGCCCATGCATC
GCCGCTTGCCCAAGACAGGGTTCAAGAACATATGTTAATTCTTGACGGGA
TGGTCATGGCACTGTCCATGTCTCCTCTTGGCTTGTATCCCGTCGCGGCG
TGCGTTCCTACTTCTCAATGCTTTTCATTTACACGGCACATCAAAACCCC
TCACAGAGACGGTATGCTCTCGGTGCTGTCAAGAAATCTTCGCACTATCG
GTGGATGGGACAGAAGAAGGATAGGTGGTGTACTGCGGGCGCTGCCCCTG
CTATCTTCACAATCACCATCAAGTGGTGCGATACCACCGGGAGAGCCGCG
TATGGGAATAAGTGCCGCGTCAATTTTAGTTGCGCATTTGTCTACCGGCT
CTTTCCTCAGTCTAAGTGACCTCCATGACAATCCAGGGGCTAAACGAGAG
CTGGGCGGAGCCACTGACCCCACTCCACGTTGGGACGGTGCAAAATTGGA
TCGACATGGGCCGTCTCGTGGTTCCTGCCGACCGCTTGATGACCATGAAG
GACCTGGTGGATGCCGGGATCTTCAAAGCGAACAGAGTGAAGCACGGCAT
CAAGCTGTTGGCCCGAGGGGGCGAACACGTCCACACCCCTTTCCACATCG
AGGTCTCCCGGGCATCTTTGGGGGCAATCGACGCCGTGGAGAAGGCGGGG
GGAACTGTTACCTGCGTGCATTTCAACCGGCTGGCCCTGCGCGCCTTGTT
GAAACCTGAGGCGTTCCGGGTCCCCATGCTGGGGGAGGATGGCCAAGTGG
AGGAGACGTTGCAGCTGCCCAGACGGGCCCGGCCACCTCCTCGCTTGATG
CCCCTTTACCTGGATAGTGACCGGAGGGGGTACCTGTCTCCCGAGGTGCA
GCGGAGGAACAAGGACCTTTTCAACGGCCAAGTCATCAGCGAAGAGATAC
CCAAGCTGGCTTTGGATTAGCGCAAACGCGTGGGTCGGGGCATTGGTTCT
GGATCCGGGAAAACGTCAGGCAGGGGCATGAATGGGCAGAAGAAACGATC
GAGCGTGAACATCCCCCAGGGCTTTGAAGGCGGTCAGACGCCCATGCATC
GCCGCTTGCCCAAGACAGGGTTCAAGAACATATGTTAATTCTTGACGGGA
TGGTCATGGCACTGTCCATGTCTCCTCTTGGCTTGTATCCCGTCGCGGCG
TGCGTTCCTACTTCTCAATGCTTTTCATTTACACGGCACATCAAAACCCC
TCACAGAGACGGTATGCTCTCGGTGCTGTCAAGAAATCTTCGCACTATCG
GTGGATGGGACAGAAGAAGGATAGGTGGTGTACTGCGGGCGCTGCCCCTG
CTATCTTCACAATCACCATCAAGTGGTGCGATACCACCGGGAGAGCCGCG
TATGGGAATAAGTGCCGCGTCAATTTTAGTTGCGCATTTGTCTACCGGCT
CTTTCCTCAGTCTAAGTGACCTCCATGACAATCCAGGGGCTAAACGAGAG
CTGGGCGGAGCCACTGACCCCACTCCACGTTGGGACGGTGCAAAATTGGA
TCGACATGGGCCGTCTCGTGGTTCCTGCCGACCGCTTGATGACCATGAAG
GACCTGGTGGATGCCGGGATCTTCAAAGCGAACAGAGTGAAGCACGGCAT
CAAGCTGTTGGCCCGAGGGGGCGAACACGTCCACACCCCTTTCCACATCG
AGGTCTCCCGGGCATCTTTGGGGGCAATCGACGCCGTGGAGAAGGCGGGG
GGAACTGTTACCTGCGTGCATTTCAACCGGCTGGCCCTGCGCGCCTTGTT
GAAACCTGAGGCGTTCCGGGTCCCCATGCTGGGGGAGGATGGCCAAGTGG
AGGAGACGTTGCAGCTGCCCAGACGGGCCCGGCCACCTCCTCGCTTGATG
CCCCTTTACCTGGATAGTGACCGGAGGGGGTACCTGTCTCCCGAGGTGCA
GCGGAGGAACAAGGACCTTTTCAACGGCCAAGTCATCAGCGAAGAGATAC
CCAAGCTGGCTTTGGATTAGCGCAAACGCGTGGGTCGGGGCATTGGTTCT
GGATCCGGGAAAACGTCAGGCAGGGGCATGAATGGGCAGAAGAAACGATC
GAGCGTGAACATCCCCCAGGGCTTTGAAGGCGGTCAGACGCCCATGCATC
GCCGCTTGCCCAAGACAGGGTTCAAGAACATATGTTAATTCTTGACGGGA
TGGTCATGGCACTGTCCATGTCTCCTCTTGGCTTGTATCCCGTCGCGGCG
TGCGTTCCTACTTCTCAATGCTTTTCATTTACACGGCACATCAAAACCCC
TCACAGAGACGGTATGCTCTCGGTGCTGTCAAGAAATCTTCGCACTATCG
GTGGATGGGACAGAAGAAGGATAGGTGGTGTACTGCGGGCGCTGCCCCTG
CTATCTTCACAATCACCATCAAGTGGTGCGATACCACCGGGAGAGCCGCG
TATGGGAATAAGTGCCGCGTCAATTTTAGTTGCGCATTTGTCTACCGGCT
CTTTCCTCAGTCTAAGTGACCTCCATGACAATCCAGGGGCTAAACGAGAG

Synonyms

Publications