EWM27441.1, cds3231 (CDS) Nannochloropsis gaditana

Overview
NameEWM27441.1
Unique Namecds3231
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1096145..1096513 -
Alignment locationCM002460.1:1095856..1096016 -
Alignment locationCM002460.1:1095184..1095703 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27441.1
ProductRibosomal protein L18e/L15P
Orig transcript idgnl|cribi|Naga_100579g2.6099.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1096145..1096513 -
CM002460.1supercontigCM002460.1:1095856..1096016 -
CM002460.1supercontigCM002460.1:1095184..1095703 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR030878Ribosomal_L15
IPR005749Ribosomal_L15_bac-type
IPR021131Ribosomal_L18e/L15P
Homology
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|585109693|gb|EWM27441.1| (Ribosomal protein L18e/L15P [Nannochloropsis gaditana])

HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0
Query:    1 MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD 349
            MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD
Sbjct:    1 MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD 349          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|698807056|ref|XP_009836557.1| (ribosomal protein L15 [Aphanomyces astaci] >gi|574108537|gb|ETV74044.1| ribosomal protein L15 [Aphanomyces astaci])

HSP 1 Score: 228.794 bits (582), Expect = 3.752e-70
Identity = 128/247 (51.82%), Postives = 167/247 (67.61%), Query Frame = 0
Query:   90 RMGISAASILVAHLST-GSF-------LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
            R+ ++ AS  +A  S+ GS        + L++L DNPGA R+ KR+GRGIGSG GKT GRG  GQK RS  + P  GFEGGQTP+++R+PK GF N WA P+  L+V  +Q +IDMGR  V A + +TMK LVD+G+   +RVKHG+KLLA+G   + TP +IEVS+AS GAI+AVE AGG +  V+FNRL LR+LLKP  F       DG+      LP+ ARPPP+ M  Y D ++RGYLS E+Q
Sbjct:   11 RVAVAPASASIARFSSYGSAAPALIEPVRLNNLADNPGAARKGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPIYQRVPKRGFNNKWATPMETLNVDRLQLFIDMGR--VDATQTITMKTLVDSGLLTTSRVKHGVKLLAKGKSALTTPINIEVSQASQGAIEAVELAGGAIKSVYFNRLGLRSLLKPHKF-------DGK-----PLPQLARPPPKKMGYYTDINKRGYLSAEIQ 243          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|813177425|ref|XP_012205182.1| (hypothetical protein SPRG_10833 [Saprolegnia parasitica CBS 223.65] >gi|641529897|gb|KDO24045.1| hypothetical protein SPRG_10833 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 228.024 bits (580), Expect = 4.599e-70
Identity = 119/239 (49.79%), Postives = 159/239 (66.53%), Query Frame = 0
Query:   90 RMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
            RM +   S   A ++    + L++L DN GA +  KR+GRGIGSG GKT GRG  GQK RS  + P  GFEGGQTP+H+R+PK GF N WA P+ PL+V  +Q +IDMGR  +   + +T+K L D G+   +R+KHG+KLLA G +H+ TP +IE+++AS GAI+A+EKAGG++  V++NRL LRALLKP  F V              LP+ ARPPP+ M  Y + D+RGYLS EVQ
Sbjct:   10 RMTLRPMSTQAAPMAVFEPIRLNNLADNAGAHKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPLHQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITLKTLTDCGLLTTSRIKHGVKLLASGKQHLTTPINIEITQASEGAIEAIEKAGGSIKSVYYNRLGLRALLKPHKFDV--------------LPQNARPPPKKMGYYTNYDKRGYLSAEVQ 232          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|669145976|ref|XP_008608550.1| (50S ribosomal protein L15 [Saprolegnia diclina VS20] >gi|530739981|gb|EQC38223.1| 50S ribosomal protein L15 [Saprolegnia diclina VS20])

HSP 1 Score: 226.483 bits (576), Expect = 2.118e-69
Identity = 115/220 (52.27%), Postives = 153/220 (69.55%), Query Frame = 0
Query:  109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
            + L++L DN GA +  KR+GRGIGSG GKT GRG  GQK RS  + P  GFEGGQTP+H+R+PK GF N WA P+ PL+V  +Q +IDMGR  +   + +T+K L D+G+   +R+KHG+KLLA G +H+ TP +IE+++AS GAI+A+EKAGG++  V++NRL LRALLKP  F V              LP+ ARPPP+ M  Y + D+RGYLS EVQ
Sbjct:   30 IRLNNLADNAGAHKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPLHQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITLKTLTDSGLLTTSRIKHGVKLLASGKQHLTTPINIEITQASEGAIEAIEKAGGSIKSVYYNRLGLRALLKPHKFDV--------------LPQNARPPPKKMGYYTNYDKRGYLSAEVQ 233          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|673039899|ref|XP_008873910.1| (ribosomal protein L15 [Aphanomyces invadans] >gi|574470691|gb|ETV97701.1| ribosomal protein L15 [Aphanomyces invadans])

HSP 1 Score: 225.713 bits (574), Expect = 5.104e-69
Identity = 118/218 (54.13%), Postives = 152/218 (69.72%), Query Frame = 0
Query:  111 LSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
            L++L DNPGA R+ KR+GRGIGSG GKT GRG  GQK RS  + P  GFEGGQTP+++R+PK GF N WA P+  L+V  +Q +IDMGR  V A + +TMK LVD G+   +RVKHG+KLLA+G   + +P  IEVS+AS GAI+AVEKAGG++  V++NRL LRALLKP  F            E   +P+ ARPPP+ +  Y D ++RGYLS E+Q
Sbjct:   39 LNNLADNPGAARKGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPIYQRVPKRGFNNKWATPMETLNVDRLQLFIDMGR--VDATQTITMKTLVDCGLLTTSRVKHGVKLLAKGKSALTSPVTIEVSQASQGAIEAVEKAGGSIKSVYYNRLGLRALLKPHKF------------EGKPMPQLARPPPKKLGYYTDFEKRGYLSAEIQ 242          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1210530027|dbj|GAX11560.1| (hypothetical protein FisN_22Lh250 [Fistulifera solaris])

HSP 1 Score: 225.713 bits (574), Expect = 7.527e-69
Identity = 125/228 (54.82%), Postives = 152/228 (66.67%), Query Frame = 0
Query:  107 SFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEP-LTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEH---VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRN 330
            +FL L+ L DNPGA  +++RVGRGIGS  GKTSGRG  GQK RS  NI   FEGGQT  ++ +PK GF N   E  + PL+VGT+Q +IDMGR + P    +T+ DL  AG+FKAN VKHG+KLL  G E    +  P H++VSRAS  AIDAVEKAGGTVT VH+NRLALRAL++PE F               Q+PR ARPPP+  P Y     RGYL+P+VQ RN
Sbjct:   31 AFLRLNTLQDNPGAVHKKRRVGRGIGSSKGKTSGRGHKGQKARSGGNIHPSFEGGQTKFYKLVPKRGFNNKEHEATMVPLNVGTLQMYIDMGR-IDPNKEEITLYDLQKAGLFKANAVKHGVKLL--GDEKACPLQQPVHLKVSRASKSAIDAVEKAGGTVTTVHYNRLALRALMRPEKFD--------------QVPRFARPPPKYQPYYTSWGNRGYLNPQVQIRN 241          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1173946492|gb|OQR95018.1| (50S ribosomal protein L15 [Thraustotheca clavata])

HSP 1 Score: 224.557 bits (571), Expect = 8.853e-69
Identity = 118/236 (50.00%), Postives = 160/236 (67.80%), Query Frame = 0
Query:   93 ISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
            ++ A +   H +    + L++L DN GA +  KR+GRGIGSG GKT GRG  GQK RS  + P  GFEGGQTP+++R+PK GF N WA P+ PL+V  +Q +IDMGR  +   + +T+K L D G+   +RVKHG+KLLA G EH+ TP +IE+S+AS GAI A+EKAGG++  V++NRL LRALLKP  F       +G++     LP+ ARPPP+ M  Y + D+RGYLS E+Q
Sbjct:   11 MTVAPVRSLHSAPVESIRLNNLADNAGAHKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPIYQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITIKTLTDCGLLTTSRVKHGVKLLANGKEHLTTPINIEISQASEGAIAAIEKAGGSIKSVYYNRLGLRALLKPHKF-------EGKL-----LPQNARPPPKKMGYYTNYDKRGYLSAEIQ 232          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1173935829|gb|OQR86884.1| (50S ribosomal protein L15 [Achlya hypogyna])

HSP 1 Score: 223.787 bits (569), Expect = 2.475e-68
Identity = 119/220 (54.09%), Postives = 149/220 (67.73%), Query Frame = 0
Query:  109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
            + L++L DN GA +  KR+GRGIGSG GKT GRG  GQK RS  + P  GFEGGQTP+H+R+PK GF N WA P+ PL+V  +Q +IDMGR  +   + +T+K L D G+   +RVKHG+KLLA G EH+ TP +IEVS+AS GAI AVEKAGG++  V  NRL LRALLKP  F V              LP+ ARPPP+ M  Y + D+RGYLS E+Q
Sbjct:   30 IRLNNLADNAGAIKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPLHQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITIKTLTDCGLLTTSRVKHGVKLLANGKEHLTTPINIEVSQASEGAIAAVEKAGGSIKSVFHNRLGLRALLKPHKFDV--------------LPQNARPPPKKMGYYTNYDKRGYLSAEIQ 233          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1210528413|dbj|GAX12935.1| (hypothetical protein FisN_22Hh250 [Fistulifera solaris])

HSP 1 Score: 223.787 bits (569), Expect = 4.296e-68
Identity = 124/228 (54.39%), Postives = 152/228 (66.67%), Query Frame = 0
Query:  107 SFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEP-LTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEH---VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRN 330
            +FL L+ L DNPGA  +++RVGRGIGS  GKTSGRG  GQK RS  NI   FEGGQT  ++ +PK GF N   E  + PL+VGT+Q +IDMGR + P    +T+ DL  AG+FKAN VKHG+KLL  G E    +  P H++VSRAS  AIDAVEKAGGTVT VH+NRLALRA+++PE F               Q+PR ARPPP+  P Y     RGYL+P+VQ RN
Sbjct:   31 AFLRLNTLQDNPGAVHKKRRVGRGIGSSKGKTSGRGHKGQKARSGGNIHPSFEGGQTKFYKLVPKRGFNNKEHEATMVPLNVGTLQMYIDMGR-IDPNKEEITLYDLQKAGLFKANAVKHGVKLL--GDEKSCPLQHPIHLKVSRASKSAIDAVEKAGGTVTTVHYNRLALRAVMRPEKFD--------------QVPRFARPPPKYQPYYTSWGNRGYLNPQVQIRN 241          
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|635364067|emb|CCI47431.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 213.772 bits (543), Expect = 1.794e-64
Identity = 112/237 (47.26%), Postives = 158/237 (66.67%), Query Frame = 0
Query:   95 AASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQG--FEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRR 329
            A+S  V +LS    + L++L DN G+ +  KR+GRGIGSG GKT GRG  GQK RS     +G  FEGGQTP+++R+PK GF N +A P+T +++  +Q +IDMGR  + A++ +T+K+LV  G+   +++K+G+KLL +G EH+ TP  IEV++AS  AIDA+E  GG++T V++NRL LRALLKP  F                LPR ARP P+ M  Y + ++RGYLSPE+Q R
Sbjct:   23 ASSRQVTNLS-ADVVRLNNLADNEGSHKRSKRLGRGIGSGKGKTCGRGHKGQKSRSGGKAGRGPGFEGGQTPIYQRVPKRGFNNRFATPMTVINLDKLQLFIDMGR--IDANKKITLKELVSCGMVTCSKIKYGVKLLGKGAEHLTTPVEIEVTQASTCAIDAIEAVGGSITAVYYNRLGLRALLKPHKFET--------------LPRFARPNPKKMRYYTNYEKRGYLSPEMQAR 242          
The following BLAST results are available for this feature:
BLAST of EWM27441.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109693|gb|EWM27441.1|0.000e+0100.00Ribosomal protein L18e/L15P [Nannochloropsis gadit... [more]
gi|698807056|ref|XP_009836557.1|3.752e-7051.82ribosomal protein L15 [Aphanomyces astaci] >gi|574... [more]
gi|813177425|ref|XP_012205182.1|4.599e-7049.79hypothetical protein SPRG_10833 [Saprolegnia paras... [more]
gi|669145976|ref|XP_008608550.1|2.118e-6952.2750S ribosomal protein L15 [Saprolegnia diclina VS2... [more]
gi|673039899|ref|XP_008873910.1|5.104e-6954.13ribosomal protein L15 [Aphanomyces invadans] >gi|5... [more]
gi|1210530027|dbj|GAX11560.1|7.527e-6954.82hypothetical protein FisN_22Lh250 [Fistulifera sol... [more]
gi|1173946492|gb|OQR95018.1|8.853e-6950.0050S ribosomal protein L15 [Thraustotheca clavata][more]
gi|1173935829|gb|OQR86884.1|2.475e-6854.0950S ribosomal protein L15 [Achlya hypogyna][more]
gi|1210528413|dbj|GAX12935.1|4.296e-6854.39hypothetical protein FisN_22Hh250 [Fistulifera sol... [more]
gi|635364067|emb|CCI47431.1|1.794e-6447.26unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3240rna3240Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications