EWM27441.1, cds3231 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|585109693|gb|EWM27441.1| (Ribosomal protein L18e/L15P [Nannochloropsis gaditana]) HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0
Query: 1 MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD 349
MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD
Sbjct: 1 MLILDGMVMALSMSPLGLYPVAACVPTSQCFSFTRHIKTPHRDGMLSVLSRNLRTIGGWDRRRIGGVLRALPLLSSQSPSSGAIPPGEPRMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLFNGQVISEEIPKLALD 349
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|698807056|ref|XP_009836557.1| (ribosomal protein L15 [Aphanomyces astaci] >gi|574108537|gb|ETV74044.1| ribosomal protein L15 [Aphanomyces astaci]) HSP 1 Score: 228.794 bits (582), Expect = 3.752e-70 Identity = 128/247 (51.82%), Postives = 167/247 (67.61%), Query Frame = 0
Query: 90 RMGISAASILVAHLST-GSF-------LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
R+ ++ AS +A S+ GS + L++L DNPGA R+ KR+GRGIGSG GKT GRG GQK RS + P GFEGGQTP+++R+PK GF N WA P+ L+V +Q +IDMGR V A + +TMK LVD+G+ +RVKHG+KLLA+G + TP +IEVS+AS GAI+AVE AGG + V+FNRL LR+LLKP F DG+ LP+ ARPPP+ M Y D ++RGYLS E+Q
Sbjct: 11 RVAVAPASASIARFSSYGSAAPALIEPVRLNNLADNPGAARKGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPIYQRVPKRGFNNKWATPMETLNVDRLQLFIDMGR--VDATQTITMKTLVDSGLLTTSRVKHGVKLLAKGKSALTTPINIEVSQASQGAIEAVELAGGAIKSVYFNRLGLRSLLKPHKF-------DGK-----PLPQLARPPPKKMGYYTDINKRGYLSAEIQ 243
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|813177425|ref|XP_012205182.1| (hypothetical protein SPRG_10833 [Saprolegnia parasitica CBS 223.65] >gi|641529897|gb|KDO24045.1| hypothetical protein SPRG_10833 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 228.024 bits (580), Expect = 4.599e-70 Identity = 119/239 (49.79%), Postives = 159/239 (66.53%), Query Frame = 0
Query: 90 RMGISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
RM + S A ++ + L++L DN GA + KR+GRGIGSG GKT GRG GQK RS + P GFEGGQTP+H+R+PK GF N WA P+ PL+V +Q +IDMGR + + +T+K L D G+ +R+KHG+KLLA G +H+ TP +IE+++AS GAI+A+EKAGG++ V++NRL LRALLKP F V LP+ ARPPP+ M Y + D+RGYLS EVQ
Sbjct: 10 RMTLRPMSTQAAPMAVFEPIRLNNLADNAGAHKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPLHQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITLKTLTDCGLLTTSRIKHGVKLLASGKQHLTTPINIEITQASEGAIEAIEKAGGSIKSVYYNRLGLRALLKPHKFDV--------------LPQNARPPPKKMGYYTNYDKRGYLSAEVQ 232
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|669145976|ref|XP_008608550.1| (50S ribosomal protein L15 [Saprolegnia diclina VS20] >gi|530739981|gb|EQC38223.1| 50S ribosomal protein L15 [Saprolegnia diclina VS20]) HSP 1 Score: 226.483 bits (576), Expect = 2.118e-69 Identity = 115/220 (52.27%), Postives = 153/220 (69.55%), Query Frame = 0
Query: 109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
+ L++L DN GA + KR+GRGIGSG GKT GRG GQK RS + P GFEGGQTP+H+R+PK GF N WA P+ PL+V +Q +IDMGR + + +T+K L D+G+ +R+KHG+KLLA G +H+ TP +IE+++AS GAI+A+EKAGG++ V++NRL LRALLKP F V LP+ ARPPP+ M Y + D+RGYLS EVQ
Sbjct: 30 IRLNNLADNAGAHKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPLHQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITLKTLTDSGLLTTSRIKHGVKLLASGKQHLTTPINIEITQASEGAIEAIEKAGGSIKSVYYNRLGLRALLKPHKFDV--------------LPQNARPPPKKMGYYTNYDKRGYLSAEVQ 233
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|673039899|ref|XP_008873910.1| (ribosomal protein L15 [Aphanomyces invadans] >gi|574470691|gb|ETV97701.1| ribosomal protein L15 [Aphanomyces invadans]) HSP 1 Score: 225.713 bits (574), Expect = 5.104e-69 Identity = 118/218 (54.13%), Postives = 152/218 (69.72%), Query Frame = 0
Query: 111 LSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
L++L DNPGA R+ KR+GRGIGSG GKT GRG GQK RS + P GFEGGQTP+++R+PK GF N WA P+ L+V +Q +IDMGR V A + +TMK LVD G+ +RVKHG+KLLA+G + +P IEVS+AS GAI+AVEKAGG++ V++NRL LRALLKP F E +P+ ARPPP+ + Y D ++RGYLS E+Q
Sbjct: 39 LNNLADNPGAARKGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPIYQRVPKRGFNNKWATPMETLNVDRLQLFIDMGR--VDATQTITMKTLVDCGLLTTSRVKHGVKLLAKGKSALTSPVTIEVSQASQGAIEAVEKAGGSIKSVYYNRLGLRALLKPHKF------------EGKPMPQLARPPPKKLGYYTDFEKRGYLSAEIQ 242
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1210530027|dbj|GAX11560.1| (hypothetical protein FisN_22Lh250 [Fistulifera solaris]) HSP 1 Score: 225.713 bits (574), Expect = 7.527e-69 Identity = 125/228 (54.82%), Postives = 152/228 (66.67%), Query Frame = 0
Query: 107 SFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEP-LTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEH---VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRN 330
+FL L+ L DNPGA +++RVGRGIGS GKTSGRG GQK RS NI FEGGQT ++ +PK GF N E + PL+VGT+Q +IDMGR + P +T+ DL AG+FKAN VKHG+KLL G E + P H++VSRAS AIDAVEKAGGTVT VH+NRLALRAL++PE F Q+PR ARPPP+ P Y RGYL+P+VQ RN
Sbjct: 31 AFLRLNTLQDNPGAVHKKRRVGRGIGSSKGKTSGRGHKGQKARSGGNIHPSFEGGQTKFYKLVPKRGFNNKEHEATMVPLNVGTLQMYIDMGR-IDPNKEEITLYDLQKAGLFKANAVKHGVKLL--GDEKACPLQQPVHLKVSRASKSAIDAVEKAGGTVTTVHYNRLALRALMRPEKFD--------------QVPRFARPPPKYQPYYTSWGNRGYLNPQVQIRN 241
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1173946492|gb|OQR95018.1| (50S ribosomal protein L15 [Thraustotheca clavata]) HSP 1 Score: 224.557 bits (571), Expect = 8.853e-69 Identity = 118/236 (50.00%), Postives = 160/236 (67.80%), Query Frame = 0
Query: 93 ISAASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
++ A + H + + L++L DN GA + KR+GRGIGSG GKT GRG GQK RS + P GFEGGQTP+++R+PK GF N WA P+ PL+V +Q +IDMGR + + +T+K L D G+ +RVKHG+KLLA G EH+ TP +IE+S+AS GAI A+EKAGG++ V++NRL LRALLKP F +G++ LP+ ARPPP+ M Y + D+RGYLS E+Q
Sbjct: 11 MTVAPVRSLHSAPVESIRLNNLADNAGAHKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPIYQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITIKTLTDCGLLTTSRVKHGVKLLANGKEHLTTPINIEISQASEGAIAAIEKAGGSIKSVYYNRLGLRALLKPHKF-------EGKL-----LPQNARPPPKKMGYYTNYDKRGYLSAEIQ 232
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1173935829|gb|OQR86884.1| (50S ribosomal protein L15 [Achlya hypogyna]) HSP 1 Score: 223.787 bits (569), Expect = 2.475e-68 Identity = 119/220 (54.09%), Postives = 149/220 (67.73%), Query Frame = 0
Query: 109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQ-GFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQ 327
+ L++L DN GA + KR+GRGIGSG GKT GRG GQK RS + P GFEGGQTP+H+R+PK GF N WA P+ PL+V +Q +IDMGR + + +T+K L D G+ +RVKHG+KLLA G EH+ TP +IEVS+AS GAI AVEKAGG++ V NRL LRALLKP F V LP+ ARPPP+ M Y + D+RGYLS E+Q
Sbjct: 30 IRLNNLADNAGAIKRGKRLGRGIGSGKGKTCGRGHKGQKARSGRSGPALGFEGGQTPLHQRVPKRGFNNKWATPMHPLNVDRLQLFIDMGR--IDPTQTITIKTLTDCGLLTTSRVKHGVKLLANGKEHLTTPINIEVSQASEGAIAAVEKAGGSIKSVFHNRLGLRALLKPHKFDV--------------LPQNARPPPKKMGYYTNYDKRGYLSAEIQ 233
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|1210528413|dbj|GAX12935.1| (hypothetical protein FisN_22Hh250 [Fistulifera solaris]) HSP 1 Score: 223.787 bits (569), Expect = 4.296e-68 Identity = 124/228 (54.39%), Postives = 152/228 (66.67%), Query Frame = 0
Query: 107 SFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEP-LTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEH---VHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRN 330
+FL L+ L DNPGA +++RVGRGIGS GKTSGRG GQK RS NI FEGGQT ++ +PK GF N E + PL+VGT+Q +IDMGR + P +T+ DL AG+FKAN VKHG+KLL G E + P H++VSRAS AIDAVEKAGGTVT VH+NRLALRA+++PE F Q+PR ARPPP+ P Y RGYL+P+VQ RN
Sbjct: 31 AFLRLNTLQDNPGAVHKKRRVGRGIGSSKGKTSGRGHKGQKARSGGNIHPSFEGGQTKFYKLVPKRGFNNKEHEATMVPLNVGTLQMYIDMGR-IDPNKEEITLYDLQKAGLFKANAVKHGVKLL--GDEKSCPLQHPIHLKVSRASKSAIDAVEKAGGTVTTVHYNRLALRAVMRPEKFD--------------QVPRFARPPPKYQPYYTSWGNRGYLNPQVQIRN 241
BLAST of EWM27441.1 vs. NCBI_GenBank
Match: gi|635364067|emb|CCI47431.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 213.772 bits (543), Expect = 1.794e-64 Identity = 112/237 (47.26%), Postives = 158/237 (66.67%), Query Frame = 0
Query: 95 AASILVAHLSTGSFLSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQG--FEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLARGGEHVHTPFHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRR 329
A+S V +LS + L++L DN G+ + KR+GRGIGSG GKT GRG GQK RS +G FEGGQTP+++R+PK GF N +A P+T +++ +Q +IDMGR + A++ +T+K+LV G+ +++K+G+KLL +G EH+ TP IEV++AS AIDA+E GG++T V++NRL LRALLKP F LPR ARP P+ M Y + ++RGYLSPE+Q R
Sbjct: 23 ASSRQVTNLS-ADVVRLNNLADNEGSHKRSKRLGRGIGSGKGKTCGRGHKGQKSRSGGKAGRGPGFEGGQTPIYQRVPKRGFNNRFATPMTVINLDKLQLFIDMGR--IDANKKITLKELVSCGMVTCSKIKYGVKLLGKGAEHLTTPVEIEVTQASTCAIDAIEAVGGSITAVYYNRLGLRALLKPHKFET--------------LPRFARPNPKKMRYYTNYEKRGYLSPEMQAR 242 The following BLAST results are available for this feature:
BLAST of EWM27441.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|