rna3238, rna3238 (mRNA) Nannochloropsis gaditana

Overview
Namerna3238
Unique Namerna3238
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length811
Alignment locationCM002460.1:1089178..1089707 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102020g1.4139.mrna
Orig protein idgnl|cribi|Naga_102020g1.4139
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1089178..1089707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102020g1gene3116Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3238rna3238-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27443.1cds3230Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3238 ID=rna3238|Name=rna3238|organism=Nannochloropsis gaditana|type=mRNA|length=811bp
GCAACCTCAAAATACGGCGTGGATTTTATCGCTATAGTGCATCCAAACGT
CACTACCTCGCGTGCGGCACTCCGTCGGTCGGGCTGGAAAGTGATAGAGC
GGGACATTCCTGTGGACATCACCGATATCCAGGGCACCTTCTTGCGGGAA
CACATAGCGAAAAGCGGCTGCTGTGGGGCAACAGAGCTTTTGAAGCTGTA
CGCGTGGACACTGACAGACTATCATCGGGTAGTACACTTGGATATGGACT
CGATGCTGCTGCAGCCCATGGATGAGCTTTTTGACAAGGAGGACAAGACC
TTTATGTATACATGTGACTACGGCATGACGAATGAAAGGTTGAAAGCTTG
CATGGTGCAAGGGGGTTTCTTATTGCTCCGTCCCAACGTGACGGAGTTTG
AGCGGCTGGTGGACACTGTTAAGATCGGTGATTTCCGACAGGGCTCAGGG
TGGGGTGGGAAGGGCATTGGATGGGGCTATGGCGGCATGACTATTCAAGG
ATTGCTGCCGTACTACTTTCTGAGCCTTTCTGATCCTGAATTGTCGTTGC
AATTAGACCACTGCAAGTACAACACCATGTTTGATCAGCCGCAGTGCAAA
AACGCTAGCCTATTTCCTTCAGTGAAGAGCGTGCATTTCACGGTCTGTCA
AAAGCCTTGGTCATGTATCAATACTCATAAAGAGGCATGCGAATATTTCA
AAAGCAAATGGTTCGAGCTGCGCGATGAGCTCGAGGTTCTAGAGACGGGT
GCGCACGCAGAGGCCTGCAAGGGCGGTCAATACCACCCCTTGACGTATTT
ATATGATACAG
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protein sequence of rna3238

>rna3238-protein ID=rna3238-protein|Name=rna3238|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MSRFVMNKEPRFSKQMLTKKKWKSPLCILIYVISFVALGSYFFWMKGVIQ
QYRFQNIASVASSLYSTALYAPSTLNRKTIAYVISVTADGAHSDGAAVLA
HGIRKAS
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mRNA from alignment at CM002460.1:1089178..1089707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3238 ID=rna3238|Name=rna3238|organism=Nannochloropsis gaditana|type=mRNA|length=530bp|location=Sequence derived from alignment at CM002460.1:1089178..1089707+ (Nannochloropsis gaditana)
TGACCACTCACAACAAGTCTTCGCGAGGCGTGGTCCAAAATATATGTTAA
GTATGTCCTGATCATGATAGCGCTATAATAAATGACGACTACGCAATCTT
GGCGTGTTGGGCTGTAGCTTGACGCATTTCAAAATTTCTCCGAGCGATAG
ATGACAAACATAAAATTCTTTATGCATGCTCCTAGTAACTAAGCATTCAC
AGGGGTTACGATGTCAAGATTCGTGATGAATAAGGAACCAAGATTTAGCA
AGCAAATGTTGACAAAAAAAAAGTGGAAGTCACCACTCTGTATTCTTATT
TATGTCATCAGCTTTGTGGCGCTCGGTTCGTACTTCTTCTGGATGAAGGG
TGTGATCCAGCAGTACCGCTTTCAGAACATAGCATCGGTTGCATCGTCGT
TGTATTCCACGGCACTATATGCACCAAGCACATTGAACCGCAAGACCATC
GCGTACGTAATCTCGGTGACAGCGGATGGTGCCCACTCAGACGGCGCCGC
AGTTCTGGCCCATGGCATTCGAAAGGCCTC
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Coding sequence (CDS) from alignment at CM002460.1:1089178..1089707+

>rna3238 ID=rna3238|Name=rna3238|organism=Nannochloropsis gaditana|type=CDS|length=320bp|location=Sequence derived from alignment at CM002460.1:1089178..1089707+ (Nannochloropsis gaditana)
ATGTCAAGATTCGTGATGAATAAGGAACCAAGATTTAGCAAGCAAATGTT
GACAAAAAAAAAGTGGAAGTCACCACTCTGTATTCTTATTTATGTCATCA
GCTTTGTGGCGCTCGGTTCGTACTTCTTCTGGATGAAGGGTGTGATCCAG
CAGTACCGCTTTCAGAACATAGCATCGGTTGCATCGTCGTTGTATTCCAC
GGCACTATATGCACCAAGCACATTGAACCGCAAGACCATCGCGTACGTAA
TCTCGGTGACAGCGGATGGTGCCCACTCAGACGGCGCCGCAGTTCTGGCC
CATGGCATTCGAAAGGCCTC
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Synonyms
Publications