EWM27443.1, cds3230 (CDS) Nannochloropsis gaditana

Overview
NameEWM27443.1
Unique Namecds3230
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1089388..1089707 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27443.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102020g1.4139.mrna
GbkeyCDS
End range.
End range1089707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1089388..1089707 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM27443.1 vs. NCBI_GenBank
Match: gi|585109696|gb|EWM27443.1| (hypothetical protein Naga_102020g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 221.09 bits (562), Expect = 4.170e-73
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MSRFVMNKEPRFSKQMLTKKKWKSPLCILIYVISFVALGSYFFWMKGVIQQYRFQNIASVASSLYSTALYAPSTLNRKTIAYVISVTADGAHSDGAAVLAHGIRKAS 107
            MSRFVMNKEPRFSKQMLTKKKWKSPLCILIYVISFVALGSYFFWMKGVIQQYRFQNIASVASSLYSTALYAPSTLNRKTIAYVISVTADGAHSDGAAVLAHGIRKAS
Sbjct:    1 MSRFVMNKEPRFSKQMLTKKKWKSPLCILIYVISFVALGSYFFWMKGVIQQYRFQNIASVASSLYSTALYAPSTLNRKTIAYVISVTADGAHSDGAAVLAHGIRKAS 107
The following BLAST results are available for this feature:
BLAST of EWM27443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109696|gb|EWM27443.1|4.170e-73100.00hypothetical protein Naga_102020g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3238rna3238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications