rna3231, rna3231 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3231
Unique Name	rna3231
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	384
Alignment location	CM002460.1:1063474..1066380 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100107g10.4503.mrna
Orig protein id	gnl\|cribi\|Naga_100107g10.4503
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1063474..1066380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100107g10	gene3109	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3231	rna3231-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27449.1	cds3223	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1063474..1066380+
coding sequence from alignment at CM002460.1:1063474..1066380+

mRNA sequence

>rna3231 ID=rna3231|Name=rna3231|organism=Nannochloropsis gaditana|type=mRNA|length=384bp
ATGTTGTGTTTGGACGTCAAAATCAAGTTTGTTCCCCAAAAAGTGATCAA
TTATTTCTCGAAATTTTTGTGTGGCTGGGTCATATGGTTTTTATTTCAAG
AGATGCGGCGTCTCCAGACCGATCCTGTGGAAAGTCCCACCGCCCAGCTT
ATGCGCTCTGAACCCTTCTACGCCAACTACTTGGTCCCTTACTGCCTAAA
CCTTGCTTATACGAAGGGATGGGAAGTGCCTCCGGTACCTGCTTTCGAGA
TAAACAAGGATTGCGCTTCTGCCCAAGCTTGGCGACAAGAATACCACGAG
TTGCTGGCTAAAAATAGGTTGTTAGGTGACGAAGAAAACTCAGGTATTAA
AGAAAGCGTTGAGGAAGAACAGGCTGGGGATTGA

protein sequence of rna3231

>rna3231-protein ID=rna3231-protein|Name=rna3231|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLI
TVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPR
RQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEE
RQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPA
GDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQ
TIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVH
IRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAY
VHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSAL
EIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWV
EVRRHGVRW

mRNA from alignment at CM002460.1:1063474..1066380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3231 ID=rna3231|Name=rna3231|organism=Nannochloropsis gaditana|type=mRNA|length=2907bp|location=Sequence derived from alignment at CM002460.1:1063474..1066380+ (Nannochloropsis gaditana)
ACGTCGTGGACATCAATCAAGCCAAGGACACAGCCATTCTTGACATGTTT
CGGTGAGGGATTAAACTTTGGAAACTCTCATTATGCATTGCAGATAGATA
CATGCACCAACAATTTACGTATGCGTTGGGTTGATATAAATATATACATA
CATACATATATTGATATCTTGCGCACTTTAGACACGCAGAGAATCCATCT
CACGGGCTGCCTCAACCCCGAGAAAGGCTCAGAGTTTTTGTCATTGATGT
CCTGGCTTAATGTCAAATGTCAATAAGTCTTAAAGTAATCATCTAATGTA
TTTCATCAGATAACACGGAAGTGACAGTACATTTCAAGCAATTTATAAGT
TCGTACGGAGGCACTACTTCTATTACTGCATTGGGTTTACACCGCACATG
AGAAATTCATCCGGTACTGGCACACGACACTTGTCGGCTTGTAAACCTGC
ACCCCCAACTACGAGGAAAGACAAAGATTTCACCTTGATAAATTACTGCA
ATCGGCCGCATAAACGCCTAAGATGGCTAATCGTAGGCGTTCTTATTACG
GTACTGCTGATACTAAACATTGTGTCACTCCGAGGGCGGCGTAGCGATCC
AATTTCCTTGGTTGGACAGCTGAGCAATAATGAATATCTGGCAATGCCCC
TTCCGGCGCTTCCTCATGGCAAAGCAGTGAGTGATGACCCTCCACGACGA
CAAGAAATGTCTCTTCAAGATTTTGCAAAAGAAAGTCTTACAACGCCTCT
GATTCAAACATCATCAGAAAATAGTATCGGGAGCCAGGAACATCTGGAGC
TAGCTTCGCGAGACACAAATGAGAATGCTTCTCAtacaaaagaagaaaga
caaaaGCAGCGAGAGAGCGACAAAGAAGACGAGAATAGGGACTCATCCAA
TCTCATCGAAATGACAACTTCAGACGAGAAAGCGTCCATTGTACAGCTTG
TCGAGGCAGAAGAAAGAAACCCGGCCATTCCGTTGCTCCAACCTGCAGGC
GACAAAGCCATCCGTCATCCAATCTCTGGCCGACCTCCGTTGCATCGCCC
TGCTTCCGAGACGCATATTCAAAAAATTATGCTGACTATATCCAGCTTTG
ACCGAGGCCAGCGCATTTCCCACCTGTGGGCCGGGGATAAGCTGCAGACA
ATCCAAGAGACTTTGGTTAGTGTCAGGGAATTTTGCGAGCGTGGTTTTGA
TTTGACCGTGTGGTTCATTGCAGCGTGGAAGATCTCGCAACATGAGAAAA
TAATAGAGGAAGCATTATTTTGCCAGCGAATTCATAAGCCTGTCCACATT
CGGTATTGGGATCATTTCTCTCCCGACATCAGAAGCCTTTTGAGCTCCCG
CCATCGGCTGGCGATGGCGGAAGTGATCGGTAAGACATTGAAGGAACATG
AAAATgagaaggggtggagaaTACAATAACGAGGCATTCCTTCGTTCTAG
AGACGGTGATGGCACTCAGAGGCCAGAAATAAAATCTCAAGTTTCTCATA
ACACTGCTACACTGCTCCTTCTCATTCTCTTTTCTGTGCACAGATGAGTA
CGATTTTTTCATCTCCATCGAGGACGACATCTACCTCACACCGTTGATGG
TGGATGCGTATGTGCACGCGAGCAGCCGGCTTGCTCTCGCCACCGACGCG
GACGCCCGTGAACATTTCATGGTGGGATTTTCCCGGAAAGAACACGACTT
GCTTAGTGAGGATCGGGCCTGGGCGTTGTGGGAGACCCTGGCGGAGGAGT
ACAGTGCTTTGGAAATCCCCGGAGCAGGTTGGTGGGCACAAGTGAAGGGA
AATCGCCATCAGGGCATGTGGATGGCGACAAGGGAGCAAATTTACAATTT
TGAGAGCCGCTGTGATGGCGGCTTCTTAAATTTGACAAATCCCAACGAAG
CAGGATGGGTCGAGGTGAGGCGACATGGGGTACGGTGGtagcagggaagg
aggcggtgcagAACATGTTTGACGCACCAAAGGGGGAGCAGCAGTTTTGA
ATGCATCTTTAAATGTTGCTCATGCTCATTCCGTATCATAAACCCCATGT
GCAATATGAATTACCCATCCATGGCCAGTTTTACAGCGGAGCCTTGCAAG
TACGTAGTATGTCGGAATTGCTGCGAGTGTTTTGAATCATACTGACGATC
TCGCAAATTTCATCATCATATACCTGTTTGTTTTCCCTATGTTCTCCATT
TTAGCTATTTAGGGGTCCCAGAAGCTGTCAGGATATTCGCAAAGTTCTTC
CGATCGACGATGATCTTGGGGGCTTTGAGAGCTTCACGGTCTGGCATATG
ACTGATTCGAAATTACGAAATAGGGGAAAGGGTGTTACTCTGGTAGAGGA
TGTGATCGTCCACTTAAAAagtgagaaagaagagaaggccCAGAGAATAC
AGGAAAAGTAAAAAGCTCATGAAGAAGATCGCAAGGCTGAAGTTAGCGGT
AAGGCGAGTAGATTTTGTGGGAGGCATGTTATACGTTCACTCGTCGCCTG
TGCCTCGCTCTTGCCGGCACTCTTATGCGTCCATAGATGATTGAATCCTC
CAGAAGTGCAAATTGAGCTTCTGAAGTGGTCTGATATGGAGCTAGGTATC
AACAGGATCAAAAAACTGCAGCAAATGCaagcgagggaggtgaaTAATTT
CTGGAGGTAGGACGGTGAACAAATTAAAGACCCGAAATGATATTGACTCA
ATATATGAGGACATTCCGTCGAGAGTGTTGAACAAAATTAACTCAACCTT
TTGTATATTTTATGTCAATCAAATTCGTCAACACATTCTCTAATGAATTT
GAAGCAGAAATCGAGACTTCACTTCTTATTCTACTGTTCTTAATTACCCA
AGCTATTTGGTCCAAGTCTCCTCCATGGGGGGTCTTTCGGCTTAGAAAGC
TGCGGGC

Coding sequence (CDS) from alignment at CM002460.1:1063474..1066380+

>rna3231 ID=rna3231|Name=rna3231|organism=Nannochloropsis gaditana|type=CDS|length=2760bp|location=Sequence derived from alignment at CM002460.1:1063474..1066380+ (Nannochloropsis gaditana)
ATGAGAAATTCATCCGGTACTGGCACACGACACTTGTCGGCTTGTAAACC
TGCACCCCCAACTACGAGGAAAGACAAAGATTTCACCTTGATAAATTACT
GCAATCGGCCGCATAAACGCCTAAGATGGCTAATCGTAGGCGTTCTTATT
ACGGTACTGCTGATACTAAACATTGTGTCACTCCGAGGGCGGCGTAGCGA
TCCAATTTCCTTGGTTGGACAGCTGAGCAATAATGAATATCTGGCAATGC
CCCTTCCGGCGCTTCCTCATGGCAAAGCAGTGAGTGATGACCCTCCACGA
CGACAAGAAATGTCTCTTCAAGATTTTGCAAAAGAAAGTCTTACAACGCC
TCTGATTCAAACATCATCAGAAAATAGTATCGGGAGCCAGGAACATCTGG
AGCTAGCTTCGCGAGACACAAATGAGAATGCTTCTCAtacaaaagaagaa
agacaaaaGCAGCGAGAGAGCGACAAAGAAGACGAGAATAGGGACTCATC
CAATCTCATCGAAATGACAACTTCAGACGAGAAAGCGTCCATTGTACAGC
TTGTCGAGGCAGAAGAAAGAAACCCGGCCATTCCGTTGCTCCAACCTGCA
GGCGACAAAGCCATCCGTCATCCAATCTCTGGCCGACCTCCGTTGCATCG
CCCTGCTTCCGAGACGCATATTCAAAAAATTATGCTGACTATATCCAGCT
TTGACCGAGGCCAGCGCATTTCCCACCTGTGGGCCGGGGATAAGCTGCAG
ACAATCCAAGAGACTTTGGTTAGTGTCAGGGAATTTTGCGAGCGTGGTTT
TGATTTGACCGTGTGGTTCATTGCAGCGTGGAAGATCTCGCAACATGAGA
AAATAATAGAGGAAGCATTATTTTGCCAGCGAATTCATAAGCCTGTCCAC
ATTCGGTATTGGGATCATTTCTCTCCCGACATCAGAAGCCTTTTGAGCTC
CCGCCATCGGCTGGCGATGGCGGAAGTGATCGATGAGTACGATTTTTTCA
TCTCCATCGAGGACGACATCTACCTCACACCGTTGATGGTGGATGCGTAT
GTGCACGCGAGCAGCCGGCTTGCTCTCGCCACCGACGCGGACGCCCGTGA
ACATTTCATGGTGGGATTTTCCCGGAAAGAACACGACTTGCTTAGTGAGG
ATCGGGCCTGGGCGTTGTGGGAGACCCTGGCGGAGGAGTACAGTGCTTTG
GAAATCCCCGGAGCAGGTTGGTGGGCACAAGTGAAGGGAAATCGCCATCA
GGGCATGTGGATGGCGACAAGGGAGCAAATTTACAATTTTGAGAGCCGCT
GTGATGGCGGCTTCTTAAATTTGACAAATCCCAACGAAGCAGGATGGGTC
GAGGTGAGGCGACATGGGGTACGGTGGtagATGAGAAATTCATCCGGTAC
TGGCACACGACACTTGTCGGCTTGTAAACCTGCACCCCCAACTACGAGGA
AAGACAAAGATTTCACCTTGATAAATTACTGCAATCGGCCGCATAAACGC
CTAAGATGGCTAATCGTAGGCGTTCTTATTACGGTACTGCTGATACTAAA
CATTGTGTCACTCCGAGGGCGGCGTAGCGATCCAATTTCCTTGGTTGGAC
AGCTGAGCAATAATGAATATCTGGCAATGCCCCTTCCGGCGCTTCCTCAT
GGCAAAGCAGTGAGTGATGACCCTCCACGACGACAAGAAATGTCTCTTCA
AGATTTTGCAAAAGAAAGTCTTACAACGCCTCTGATTCAAACATCATCAG
AAAATAGTATCGGGAGCCAGGAACATCTGGAGCTAGCTTCGCGAGACACA
AATGAGAATGCTTCTCAtacaaaagaagaaagacaaaaGCAGCGAGAGAG
CGACAAAGAAGACGAGAATAGGGACTCATCCAATCTCATCGAAATGACAA
CTTCAGACGAGAAAGCGTCCATTGTACAGCTTGTCGAGGCAGAAGAAAGA
AACCCGGCCATTCCGTTGCTCCAACCTGCAGGCGACAAAGCCATCCGTCA
TCCAATCTCTGGCCGACCTCCGTTGCATCGCCCTGCTTCCGAGACGCATA
TTCAAAAAATTATGCTGACTATATCCAGCTTTGACCGAGGCCAGCGCATT
TCCCACCTGTGGGCCGGGGATAAGCTGCAGACAATCCAAGAGACTTTGGT
TAGTGTCAGGGAATTTTGCGAGCGTGGTTTTGATTTGACCGTGTGGTTCA
TTGCAGCGTGGAAGATCTCGCAACATGAGAAAATAATAGAGGAAGCATTA
TTTTGCCAGCGAATTCATAAGCCTGTCCACATTCGGTATTGGGATCATTT
CTCTCCCGACATCAGAAGCCTTTTGAGCTCCCGCCATCGGCTGGCGATGG
CGGAAGTGATCGATGAGTACGATTTTTTCATCTCCATCGAGGACGACATC
TACCTCACACCGTTGATGGTGGATGCGTATGTGCACGCGAGCAGCCGGCT
TGCTCTCGCCACCGACGCGGACGCCCGTGAACATTTCATGGTGGGATTTT
CCCGGAAAGAACACGACTTGCTTAGTGAGGATCGGGCCTGGGCGTTGTGG
GAGACCCTGGCGGAGGAGTACAGTGCTTTGGAAATCCCCGGAGCAGGTTG
GTGGGCACAAGTGAAGGGAAATCGCCATCAGGGCATGTGGATGGCGACAA
GGGAGCAAATTTACAATTTTGAGAGCCGCTGTGATGGCGGCTTCTTAAAT
TTGACAAATCCCAACGAAGCAGGATGGGTCGAGGTGAGGCGACATGGGGT
ACGGTGGtag

Synonyms

Publications