EWM27449.1, cds3223 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|585109704|gb|EWM27449.1| (hypothetical protein Naga_100107g10 [Nannochloropsis gaditana]) HSP 1 Score: 952.199 bits (2460), Expect = 0.000e+0 Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0
Query: 1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEVRRHGVRW 459
MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEVRRHGVRW
Sbjct: 1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEVRRHGVRW 459
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|585112062|gb|EWM29504.1| (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana]) HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0 Identity = 298/451 (66.08%), Postives = 349/451 (77.38%), Query Frame = 0
Query: 1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVE 451
M +S GT TR S KP P +RK + +++ NR +RLRWL+ G L+T+LL LNI+SLRGRRSD ++ + SNNE+LA+P A+ K +SDD P+ ++M ++ + E TTP + S E+S GSQE LELA R T E H K ERQKQ + ++++E D +N I+ S EKAS++ EAE NPAIPLLQPAG+KA R PISGRPPLHRPASETH+QKI+LTISS DRG+RIS LWAGDKL TI +TLVSVRE CERGFDLTVWFIAAWKISQ ++IEEALFCQR +PV IRYWDHF PD+ LSSRHRLAMA+V+DEYDFFISIEDDIYLTP MVDAYVHAS RLAL TDA AREH MVGFSRKEHDLL EDRAWALWETLA +Y L++PGAGWWAQV GN HQ MWMATREQIYNFESRC+ GFL L +P EA WVE
Sbjct: 1 MSDSFGTCTRQSSTRKPPPAMSRKGE----VSHYNRQRRRLRWLVSGSLVTLLLTLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDMLIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE 447
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|553190856|ref|XP_005855277.1| (hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526] >gi|422293778|gb|EKU21078.1| hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 369.007 bits (946), Expect = 4.829e-123 Identity = 173/217 (79.72%), Postives = 187/217 (86.18%), Query Frame = 0
Query: 236 RGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEV 452
RG+RIS LWAGDKL TI +TLVSVRE CERGFDLTVWFIAAWKISQ ++IEEALFCQR +PV IRYWDHF PD+ LSSRHRLAMA+V+DEYDFFISIEDDIYLTP MVDAYVHAS RLAL TDA AREH MVGFSRKEHDLL EDRAWALWETLA +Y L++PGAGWWAQV GN HQ MWMATREQIYNFESRC+ GFL L +P EA WVE+
Sbjct: 1 RGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEI 217
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|298715762|emb|CBJ28240.1| (hypothetical protein Esi_0097_0005 [Ectocarpus siliculosus]) HSP 1 Score: 114.39 bits (285), Expect = 1.744e-23 Identity = 78/252 (30.95%), Postives = 117/252 (46.43%), Query Frame = 0
Query: 226 KIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSP-DIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREH---------FMVGFSRKEHDLLSE--------DRAWALWETLAEEYSALEIPGAGWWAQV-------KGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEV 452
+I+ ++SFDRG+R+ + DKL I + +RE CE GF TV IAAW++S E + + LFC+R H+ Y P I + LS +HR+ M ++E+D FI +EDD+ +T + + S L D R H + GF R EH E W WE + +++ AG + + +G +QGMWMATREQ+ + +LN + G VE
Sbjct: 395 RILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEIREACEAGFSPTVHLIAAWELSGVEVFVRDRLFCRRTG--AHVPYSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFIQVEDDVIVTLNHMLLFREESELL------DGRRHSDGAPLANTAVPGFIRVEHAAEEEGTIAGPSSGEEWQEWEVMLSRLRPVKLEEAGIFLTLGPSLPVPRGGNNQGMWMATREQLRKLSEKKSCDYLNFDESSTKGHVET 638
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|298715437|emb|CBJ28048.1| (hypothetical protein Esi_0089_0116 [Ectocarpus siliculosus]) HSP 1 Score: 102.834 bits (255), Expect = 2.393e-20 Identity = 74/248 (29.84%), Postives = 120/248 (48.39%), Query Frame = 0
Query: 219 ASETHIQKIMLTISSFDRGQRISHLWAG-DKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALAT-----DADAREHFMVGFSRKEHDLLSEDRA--WALWETLAEEYSALEIPGAGWWAQVKGNR-------HQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVE 451
A+ I+ ++SFDRG+R+ G DKL + + +R CE GF V I+AW+ ++ + L C+RI PV + +H P I+ LS +HR+ M + EYD F+ +EDD+ LT + Y+ S +L+L A +M GF R E + + W WE + + + + GAG + ++ +R +QG WMAT+EQ+ +C +L T + +VE
Sbjct: 77 ATTVEAPSILFVVTSFDRGRRLGRRGKGVDKLNYVLMIMDEIRGACEAGFSPHVHLISAWEAQPEVELFTDRLLCRRIGGPVTLTLEEH-PPSIKEALSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILKYLEESEKLSLRNIGTRPRAMPMHDYMPGFVRVEPEPGATGVGGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPFSGNNQGFWMATQEQLKYLCRQCQ--YLRYTGQSSVPFVE 321
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|299471666|emb|CBN76888.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 104.375 bits (259), Expect = 3.186e-20 Identity = 69/228 (30.26%), Postives = 112/228 (49.12%), Query Frame = 0
Query: 219 ASETHIQKIMLTISSFDRGQRISHLWAG--DKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYV----HASSRLALATDADAREHFMVGFSRKEHDLLSE------DRAWALWETLAEEYSALEIPGAGWWAQV-------KGNRHQGMWMATREQI 427
A+ +I+ ISS+DR +R+ + G DKL I + ++E CE GF V IAAW S+ +I + LFCQR + V +H P +R+ L+ +HR+ M ++++D F+ +EDD+ +T + Y + RL + F+ GF R E + + W WE + + ++I GAG + + + +QGMWMATREQ+
Sbjct: 368 ATGGESGRILYVISSYDRRKRLGLGYDGKVDKLDYILMMMDEMKEACEGGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGELVPYSSEEH-PPSVRNNLAIKHRIYMKPRVEDFDVFMQVEDDMIVTLNHILLYREECDNLEKRLGMGGSRGRPNVFVPGFLRVEPGGTKDKEKDKWEGEWFEWEIVLSRLNPIKIYGAGTYMSLSPSKVLPRAGNNQGMWMATREQL 594 The following BLAST results are available for this feature:
BLAST of EWM27449.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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