EWM27449.1, cds3223 (CDS) Nannochloropsis gaditana

Overview
NameEWM27449.1
Unique Namecds3223
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1063871..1064852 +
Alignment locationCM002460.1:1065017..1065414 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27449.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100107g10.4503.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1063871..1064852 +
CM002460.1supercontigCM002460.1:1065017..1065414 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|585109704|gb|EWM27449.1| (hypothetical protein Naga_100107g10 [Nannochloropsis gaditana])

HSP 1 Score: 952.199 bits (2460), Expect = 0.000e+0
Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0
Query:    1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEVRRHGVRW 459
            MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEVRRHGVRW
Sbjct:    1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEVRRHGVRW 459          
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|585112062|gb|EWM29504.1| (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana])

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 298/451 (66.08%), Postives = 349/451 (77.38%), Query Frame = 0
Query:    1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVE 451
            M +S GT TR  S  KP P  +RK +    +++ NR  +RLRWL+ G L+T+LL LNI+SLRGRRSD ++ +   SNNE+LA+P  A+   K +SDD P+ ++M ++  + E  TTP  + S E+S GSQE LELA R T E   H K ERQKQ + ++++E  D +N I+   S EKAS++   EAE  NPAIPLLQPAG+KA R PISGRPPLHRPASETH+QKI+LTISS DRG+RIS LWAGDKL TI +TLVSVRE CERGFDLTVWFIAAWKISQ  ++IEEALFCQR  +PV IRYWDHF PD+   LSSRHRLAMA+V+DEYDFFISIEDDIYLTP MVDAYVHAS RLAL TDA AREH MVGFSRKEHDLL EDRAWALWETLA +Y  L++PGAGWWAQV GN HQ MWMATREQIYNFESRC+ GFL L +P EA WVE
Sbjct:    1 MSDSFGTCTRQSSTRKPPPAMSRKGE----VSHYNRQRRRLRWLVSGSLVTLLLTLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDMLIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE 447          
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|553190856|ref|XP_005855277.1| (hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526] >gi|422293778|gb|EKU21078.1| hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 369.007 bits (946), Expect = 4.829e-123
Identity = 173/217 (79.72%), Postives = 187/217 (86.18%), Query Frame = 0
Query:  236 RGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEV 452
            RG+RIS LWAGDKL TI +TLVSVRE CERGFDLTVWFIAAWKISQ  ++IEEALFCQR  +PV IRYWDHF PD+   LSSRHRLAMA+V+DEYDFFISIEDDIYLTP MVDAYVHAS RLAL TDA AREH MVGFSRKEHDLL EDRAWALWETLA +Y  L++PGAGWWAQV GN HQ MWMATREQIYNFESRC+ GFL L +P EA WVE+
Sbjct:    1 RGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEI 217          
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|298715762|emb|CBJ28240.1| (hypothetical protein Esi_0097_0005 [Ectocarpus siliculosus])

HSP 1 Score: 114.39 bits (285), Expect = 1.744e-23
Identity = 78/252 (30.95%), Postives = 117/252 (46.43%), Query Frame = 0
Query:  226 KIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSP-DIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREH---------FMVGFSRKEHDLLSE--------DRAWALWETLAEEYSALEIPGAGWWAQV-------KGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVEV 452
            +I+  ++SFDRG+R+   +  DKL  I   +  +RE CE GF  TV  IAAW++S  E  + + LFC+R     H+ Y     P  I + LS +HR+ M   ++E+D FI +EDD+ +T   +  +   S  L      D R H          + GF R EH    E           W  WE +      +++  AG +  +       +G  +QGMWMATREQ+     +    +LN    +  G VE 
Sbjct:  395 RILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEIREACEAGFSPTVHLIAAWELSGVEVFVRDRLFCRRTG--AHVPYSLEVHPSSIGNDLSIKHRIFMKPRLEEFDLFIQVEDDVIVTLNHMLLFREESELL------DGRRHSDGAPLANTAVPGFIRVEHAAEEEGTIAGPSSGEEWQEWEVMLSRLRPVKLEEAGIFLTLGPSLPVPRGGNNQGMWMATREQLRKLSEKKSCDYLNFDESSTKGHVET 638          
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|298715437|emb|CBJ28048.1| (hypothetical protein Esi_0089_0116 [Ectocarpus siliculosus])

HSP 1 Score: 102.834 bits (255), Expect = 2.393e-20
Identity = 74/248 (29.84%), Postives = 120/248 (48.39%), Query Frame = 0
Query:  219 ASETHIQKIMLTISSFDRGQRISHLWAG-DKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALAT-----DADAREHFMVGFSRKEHDLLSEDRA--WALWETLAEEYSALEIPGAGWWAQVKGNR-------HQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVE 451
            A+      I+  ++SFDRG+R+     G DKL  +   +  +R  CE GF   V  I+AW+     ++  + L C+RI  PV +   +H  P I+  LS +HR+ M   + EYD F+ +EDD+ LT   +  Y+  S +L+L        A     +M GF R E +  +      W  WE +   +  + + GAG +  ++ +R       +QG WMAT+EQ+     +C   +L  T  +   +VE
Sbjct:   77 ATTVEAPSILFVVTSFDRGRRLGRRGKGVDKLNYVLMIMDEIRGACEAGFSPHVHLISAWEAQPEVELFTDRLLCRRIGGPVTLTLEEH-PPSIKEALSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILKYLEESEKLSLRNIGTRPRAMPMHDYMPGFVRVEPEPGATGVGGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPFSGNNQGFWMATQEQLKYLCRQCQ--YLRYTGQSSVPFVE 321          
BLAST of EWM27449.1 vs. NCBI_GenBank
Match: gi|299471666|emb|CBN76888.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.375 bits (259), Expect = 3.186e-20
Identity = 69/228 (30.26%), Postives = 112/228 (49.12%), Query Frame = 0
Query:  219 ASETHIQKIMLTISSFDRGQRISHLWAG--DKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYV----HASSRLALATDADAREHFMVGFSRKEHDLLSE------DRAWALWETLAEEYSALEIPGAGWWAQV-------KGNRHQGMWMATREQI 427
            A+     +I+  ISS+DR +R+   + G  DKL  I   +  ++E CE GF   V  IAAW  S+   +I + LFCQR  + V     +H  P +R+ L+ +HR+ M   ++++D F+ +EDD+ +T   +  Y     +   RL +         F+ GF R E     +      +  W  WE +    + ++I GAG +  +       +   +QGMWMATREQ+
Sbjct:  368 ATGGESGRILYVISSYDRRKRLGLGYDGKVDKLDYILMMMDEMKEACEGGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGELVPYSSEEH-PPSVRNNLAIKHRIYMKPRVEDFDVFMQVEDDMIVTLNHILLYREECDNLEKRLGMGGSRGRPNVFVPGFLRVEPGGTKDKEKDKWEGEWFEWEIVLSRLNPIKIYGAGTYMSLSPSKVLPRAGNNQGMWMATREQL 594          
The following BLAST results are available for this feature:
BLAST of EWM27449.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585109704|gb|EWM27449.1|0.000e+0100.00hypothetical protein Naga_100107g10 [Nannochlorops... [more]
gi|585112062|gb|EWM29504.1|0.000e+066.08hypothetical protein Naga_100601g2 [Nannochloropsi... [more]
gi|553190856|ref|XP_005855277.1|4.829e-12379.72hypothetical protein NGA_0073800, partial [Nannoch... [more]
gi|298715762|emb|CBJ28240.1|1.744e-2330.95hypothetical protein Esi_0097_0005 [Ectocarpus sil... [more]
gi|298715437|emb|CBJ28048.1|2.393e-2029.84hypothetical protein Esi_0089_0116 [Ectocarpus sil... [more]
gi|299471666|emb|CBN76888.1|3.186e-2030.26expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3231rna3231Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications