rna3227, rna3227 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3227
Unique Name	rna3227
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3783
Alignment location	CM002460.1:1049264..1051144 +

Link to JBrowse

Properties


Property Name	Value
Product	basic helix-loop-helix family protein
Orig transcript id	gnl\|cribi\|Naga_100107g6.4499.mrna
Orig protein id	gnl\|cribi\|Naga_100107g6.4499
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1049264..1051144 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100107g6	gene3105	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3227	rna3227-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27445.1	cds3219	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1049264..1051144+
coding sequence from alignment at CM002460.1:1049264..1051144+

mRNA sequence

>rna3227 ID=rna3227|Name=rna3227|organism=Nannochloropsis gaditana|type=mRNA|length=3783bp
GCTGTGACCAGGAATTGAATTGGACGTCTATGCCACACAAAACTAGTAGA
AGTGGCTCGGTCAAAACTAAGCCAACTACCTCAATTCAAGATAGAAAAGA
TTGTACATCGATAGCAGCCGCCAAAAGGGACGTCAATGTGTCTGGGGGCG
TAAGGGAGACTAAGGCACATGCTCCTCCCTCTCTTCCCGAGGATACTCTC
CTACCTCCTACCGCTGCGCCATCTGCGCCACCGGTACCAGACAAGGCGGA
AAGCAGAGCATTCAATCCTCAAAAGGAAAACAATCCTAATCGGAAACATG
GTACGGGGTCTGTCACAGCTTCCGCGATGAAGAAGAAAAACGCCAGAAGC
GACCTTTCCGTCAAAGTGTCGGGGTTCTCTGCGCCCATCCTTGATTGGCT
TAGCACAGGCTTCTTGCTCCAGGCAGCTGGGGCATCAACTGTCCTCAATA
AATTTTTGACGGATTTATCGAAAGAGTACTTTGGCCAGATACTCTTGCAG
GTTCAACGTCAAGATGCCAAAGGGTTGCGGGAGGTGCTTATGCAGCACGC
ACAAGAGCCACGTGCAACAGCCCTTGGCGTCGGTATGTGTGCAACAGAGA
ACAACAGCGGCATTAAAAGCAAGCTCGTTAAGAGTAAGGACAAGATCACT
AAGAGGAACGGGAACGAGACCGAGCAGGTGGGGCTGACAGGGCCGAGCTC
AGTCCTGGGTCCTGTCGCTCTGTCCTGGGAGAACACCGCGCTCAGCCGCT
TAAAACACCCGGTCAAAGGGGCTTGGGAAGCCGCGAAAGTCTACGGCCCT
CCTTTAGGACCTACCCCCCTGGCCCTTTCGGGGCAGGCGACCCCTGAAAC
GAGCGATCCCGACCTGAAGCTCGCCGTCCTCACCAAGTACAAGGCCTTTT
CTCCCGTGCTTGACCCCTCCCTCACCGCCACGGCGGCGGCAACAGCGCAG
GAGTGGGTGGAGTCTACCACGTGGATGAAGAAAGATGGAGGAGGAAGGTT
CGACAAAGCCTTGGACAACCTCTCGGCGCTGCTGAGCGGCATGGCAGCAG
TCTACCCGTCTGTGCGTGCTGCCCTCCCCACCGCCCTCGAGGGTTTGCAA
AAGGTTCAGGAGGTACGAAACAGCTTAAGAAGTGGGGAGGAAGGGAGAGG
GATGGGAAAAGAAGAGGTGGAAGGGCTGATCCGGTGGCGGGTGCGCAGAT
TACTGTGCCAAGCTTGGGCCGGTCGAAAAGCGAAGGAGAAGGGAGAGGTT
CTGGCTGCAGAGAATGCTCTGACAGCCTTACAGACAGCCATGGACGCCGA
GGATGTCCAGGTCGGCGATTTTGTCCGGGCGTGTAGGAAGGAAGAAGAAA
CGAAGATCGAGACCGCCGATACAAAGGGACAGGGGGGAAATGACAGCGAA
GGGGTGGTGGATGGGAGAGGCGAACTCTCTGAGAGGGCTGTGCGCAATAA
AGAGGAGGAGGTGGAAGAGAGGACCAGCATGAGTGCAGCGGAAAGCATGT
CGGAGCAGCGCGCCTGGGAGGCTCACCTCAAGCATCACTCAGGCCTCTCT
CAGGCCGTCGCCTCGCGCATTGCCGCCTTTCGACAGTGGTTGCAGGATGG
CAAGGCCCAAGACGTGATCCGAGACGTCCTCCTTTTGCTTCGACAGCACC
AACACAAGGAGACTTGCCTCCTTCCCGTCGATGTGCACGTGTTGCAGGAG
AACCTAGGCAAGGCGGCCTTGGTGGTGGGAAATCCGACCCTGGCCCTGTC
GGCGCTCGACAAGGCGGGGAAGGTGGGCGTCTGTACTGAAGGGGACAACC
CTACCCTGCCTCCTTGCGTGGAGTATTGTCCCCTGGCGCTGCGTTTGAAA
GCCCTCGCATTGGAAGTCAAAGGAGAGGAGGAGGCGACCAAGCGGGAAGG
GAGCGCGGCGGAGAAGACAGAAGACGAGCCGCACGCGACCGAGTTGGCAC
TGGACGTATTGGGGGACCTGAGGAAGGAGGATATAGAGAGAAACGACAGT
GTGAGGCGTGCGAGTTACTTGACCTCGGCGGCGGTGCATACGTACCACCG
GCTCAAACGCTTGAGCAATGGCGAAGGTGGCCAGGGAGAAGCTCCGGAGA
AGACACGAGTTGTAGTGGAGCGAGGGCTTGGCCTCTTGGAGCAGGCGCGG
GGCATGTTTGACGCGGACAGGAATGAGGAAGGGACAGAGGGTGGTCGATG
GGTGAGCCTCGTCGATCCGAAATGGGTGTCCCTGTCCCAAGACGGAGACG
CCATGCTCTGGATCCAAACCAACCGGCTGTTGGCCATCTTTTATGCGGAA
CCCTGCCTCGCTCCCTCCCTCCCACATCACCATGACCTCTCCATCGCCGC
CTACCAAGCTGCCCTCCTCCCTGCCACCCGCCTCTTAGATGGGACCCTGG
AGGCCCATTCCATGGTTCATACGCTTCGATTTGAACTCGCGAGAGCCTAC
GCGCGGCGCGGTAAGAACGAGCAGGACGAAGCAACCTGCCTTGCCCTCTT
GAGAGAGGCGGAAGCTGCTTTGCTGCCCTCGCAGAGGGAGGAGATGGGGC
GGCTTTTGCATTACACCGGGCGACTATTGGAGGAAAAGGGTCGCAAAAAA
GTGGAGGATGAGAATGAAGGCGGGGGCGAAAAGGAATTGCGGGAGGCAAT
AGAATTGTTTGGACGGGCTGTGGAGGCTTTCGAGGGTGTACGGGCGAAGC
CAAAGGGAGAGGAGGAGCGACTCAATTACATGATTGGATTGAACAAAAGC
ATGGCCGGCATCTATGTCACATTGATGAAAAGCATGGACAAAGGGTGTGA
AGGCAGGTCCGACGGAACAGAAGCGGGGAAAGAAGGAGGGAAGGACAAAA
ACGGGCAGCAACAGCTGTCCGGGAAGCCCTCTTTATTCCCGTCCTCGCCG
TCTCTGTCGCCTCCCAAACAGGCGATTTGGAACGCAGATTTGGAGAAAGC
CATCAACAGGTACACAAATGCTTACACTCTTTTGAGTGCAGTGGCGGGAG
GAGGCGGGAAAGCCTCCTTCGAAGCGGGCCAAGTAGCTTTTGCCATCGGA
GACTTGTACCTGCAACGTCGGAAGGAAAAACGGGCGCGGAATGTTGAAAA
TGCGATCGCTTGGTTTGAAAAAGCTGAGCGGGACATCCGCCGAAGTGCTC
CAGATCGGAAAGATGCGAGTGGGCGGTACTTACCGTTGTACACACAATTA
TACGGGAAGCTGGCTGGCTTGTGGCACGAGCGCGCGGGGTTGCGAAAAAA
GGAGGGAGGAGGGAGCAGTGGAAAAGTGAAGGAAGATTTGAGAAAAGGGG
AGGCGTACGGTGTACTGTTTACGAATGCAAGAAGAAATTACGAATTGCGG
GCGGACGTGTTGGCGGGCAGGATGGCAGATGGACTGAGAGTAGAGGAAGA
GGGGAAGGATAGGGGAAAAGAGGAGCGTTGACGGGCAACATCACAGAAAG
AATGATGTTTTGGTGCTCTGGCAATGGTTCCGCGACTGATGCGAGGAAAG
GAAAGCGGATTAGAATTAGGCACACTTCATTACAAAAAAAACTTTGAAAA
TAAAGGGAAACCGCCATGCAACGTAGGACTGCGATAACCATTGTCAGAAA
GGAAATGTGGAGAAGAGAGCTACCGGAAATCTCACGTTGCAAGATCGAAG
TGGTTTATTGTCAAATGACCGTGGACGAAGCAAGGGGCAACCCAGCATGT
TTTTGTACCAGAAGACAGACAAAATTAGATGGGTAGGAAGATGTTTACAC
ACAAAGAGCACATGAGGCACCCTGGGAGTTTCC

protein sequence of rna3227

>rna3227-protein ID=rna3227-protein|Name=rna3227|organism=Nannochloropsis gaditana|type=polypeptide|length=498bp
MKRATDKDVQSSVGDRATAKRSCALTNGAAANDREPAVVTLAIPNFGPAE
RVNASLQILTTSVANFLDSKFIVRLNESVGVLKPSKFVLELVVVKEAPDG
DAAKLAARAGYVTRAMTCTITKPRQRLHQGEIGALTEETRGSGYPQVIAV
PCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSS
ALCVQQGVEYVLLAMPPCQALASVLPDDWSNSLQCTYETLIRVFLEQLVG
KVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPL
QGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKP
EFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSL
PSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKV
TVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCESMNINSSESH

mRNA from alignment at CM002460.1:1049264..1051144+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3227 ID=rna3227|Name=rna3227|organism=Nannochloropsis gaditana|type=mRNA|length=1881bp|location=Sequence derived from alignment at CM002460.1:1049264..1051144+ (Nannochloropsis gaditana)
TAACGGACCTTAACGGCTTTGGCCGTCCACAAGCCAGAAGGACTTGGAAC
TATGTCGTTGCCCGTAGTAGACAGGGCGCCTAAGCACAAGTCCTTCGATT
TGGGTTGTGCGAAAGGATTTCTTGGACCTGATGCTGTGtgtcattttttt
tcctcatcgATAGTCTTCCATAGACGGGACAGGACAGAGTTTTGGAAGGC
CGGGAGGTGAAGTTCTCCAGTGTACACAAGCATGAAACGTGCGACAGATA
AAGATGTACAGTCGAGCGTAGGAGATAGGGCCACAGCCAAAAGAAGTTGT
GCACTCACTAACGGTGCCGCTGCGAACGATCGTGAGCCTGCGGTAGTGAC
ACTCGCAATCCCAAACTTCGGGCCTGCCGAGAGAGTAAATGCAAGCCTCC
AAATCCTTACTACCTCCGTGGCAAATTTTTTGGATTCAAAGTTCATTGTA
AGGTTGAATGAAAGTGTCGGCGTATTAAAACCTTCAAAATTCGTTTTGGA
ACTCGTGGTGGTTAAAGAGGCCCCGGATGGAGACGCGGCAAAATTAGCAG
CTCGGGCGGGGTATGTTACCAGAGCCATGACATGCACAATCACAAAGCCG
CGTCAACGTTTGCATCAAGGGGAAATTGGCGCACTGACAGAGGAGACAAG
GGGCTCAGGGTATCCTCAGGTTATTGCCGTGCCATGTTCCCGTTCATTTC
TTCCTACAGATCATCCCGTGGCCATGGAAACTTTCAAAAACGCAGGACCG
CAGCTAACAAATACGGCGAGATTGCTTTTCCACAAGGCTGAACCAGGCCT
TGTCTATCCAATTAAATTGACAAAGTCAAGCGCTTTGTGTGTACAGCAAG
GTGTCGAGTACGTACTTTTAGCGATGCCTCCGTGTCAGGCACTTGCATCT
GTCTTGCCTGATGATTGGTCAAATTCTTTACAATGCACCTATGAAACCTT
GATCAGAGTATTTTTAGAGCAACTAGTTGGAAAAGTGACACTTCCGCAGG
TACTTCCGCAGAAGATGGATAGTAAGACTGAGGGCAACAGCACCACAGCG
CCACCTTCGTTGGATAAGCGAGAGGAGGATCACGTTGAGTCACCACATAT
CCCTGTCTACCAGCATCCTGGCCAGCCACTCCAGGGTGGTGGCTGGCATG
GTGCTCTAATACGATACCTGGATCACACCCCAGAACTCAGGCACTTTATC
TTCTATGAGACTTCGGAGTGGATGGCTATTTATGACGGCTACCCTAAAGC
AAAGGTCCACCTGCTCTTGATTCCCAAACCCGAATTCTTGACCATTAATT
CTGTCACGGAACTCAGCCATGACAAGCACAACAAGCAAATAAGTAGGCTG
CATTCTGCGGCCCGATGCATCGCTACCAAGTTGGAAAAGGACACGAATGG
ACTGCGTCTCCGTATGGGATACCATAGTTTGCCGTCCCTTCGCCCTCTAC
ATATCCACATTGTCTCACAAGACTTCGATTCACCTGCACTTAAAACAAAA
AGACACTGGAACAGCTTTACCACACCTTTTTTCCTGGACCTGTTGCAAGT
AGAAACTGCCTTGCAAATCCACGGTAAGGTAACCGTAAGACACGAGGATG
CCGAAGCCTTATTAAAATTATCACTACGATGTCATGCGTGCGGTGCTGTG
CAAAAAACGATTCCCGACCTTAAGCAGCATGTAAAAGGTTGTGAATCAAT
GAACATAAATTCGAGTGAATCGCACTAGAGCGCGTGGGGTGTTGTATGGC
GCGCTAAAATAACATAACATCTTAACAAGGCCTGACGCATAAAGTGTTGA
TTGGGTTTTTGTTTTCCATTTTCATTCAATAATCCCCGTATGCCTTTGAA
ATCGTATTGCTTATGATACTGCCTTGAAGTC

Coding sequence (CDS) from alignment at CM002460.1:1049264..1051144+

>rna3227 ID=rna3227|Name=rna3227|organism=Nannochloropsis gaditana|type=CDS|length=1497bp|location=Sequence derived from alignment at CM002460.1:1049264..1051144+ (Nannochloropsis gaditana)
ATGAAACGTGCGACAGATAAAGATGTACAGTCGAGCGTAGGAGATAGGGC
CACAGCCAAAAGAAGTTGTGCACTCACTAACGGTGCCGCTGCGAACGATC
GTGAGCCTGCGGTAGTGACACTCGCAATCCCAAACTTCGGGCCTGCCGAG
AGAGTAAATGCAAGCCTCCAAATCCTTACTACCTCCGTGGCAAATTTTTT
GGATTCAAAGTTCATTGTAAGGTTGAATGAAAGTGTCGGCGTATTAAAAC
CTTCAAAATTCGTTTTGGAACTCGTGGTGGTTAAAGAGGCCCCGGATGGA
GACGCGGCAAAATTAGCAGCTCGGGCGGGGTATGTTACCAGAGCCATGAC
ATGCACAATCACAAAGCCGCGTCAACGTTTGCATCAAGGGGAAATTGGCG
CACTGACAGAGGAGACAAGGGGCTCAGGGTATCCTCAGGTTATTGCCGTG
CCATGTTCCCGTTCATTTCTTCCTACAGATCATCCCGTGGCCATGGAAAC
TTTCAAAAACGCAGGACCGCAGCTAACAAATACGGCGAGATTGCTTTTCC
ACAAGGCTGAACCAGGCCTTGTCTATCCAATTAAATTGACAAAGTCAAGC
GCTTTGTGTGTACAGCAAGGTGTCGAGTACGTACTTTTAGCGATGCCTCC
GTGTCAGGCACTTGCATCTGTCTTGCCTGATGATTGGTCAAATTCTTTAC
AATGCACCTATGAAACCTTGATCAGAGTATTTTTAGAGCAACTAGTTGGA
AAAGTGACACTTCCGCAGGTACTTCCGCAGAAGATGGATAGTAAGACTGA
GGGCAACAGCACCACAGCGCCACCTTCGTTGGATAAGCGAGAGGAGGATC
ACGTTGAGTCACCACATATCCCTGTCTACCAGCATCCTGGCCAGCCACTC
CAGGGTGGTGGCTGGCATGGTGCTCTAATACGATACCTGGATCACACCCC
AGAACTCAGGCACTTTATCTTCTATGAGACTTCGGAGTGGATGGCTATTT
ATGACGGCTACCCTAAAGCAAAGGTCCACCTGCTCTTGATTCCCAAACCC
GAATTCTTGACCATTAATTCTGTCACGGAACTCAGCCATGACAAGCACAA
CAAGCAAATAAGTAGGCTGCATTCTGCGGCCCGATGCATCGCTACCAAGT
TGGAAAAGGACACGAATGGACTGCGTCTCCGTATGGGATACCATAGTTTG
CCGTCCCTTCGCCCTCTACATATCCACATTGTCTCACAAGACTTCGATTC
ACCTGCACTTAAAACAAAAAGACACTGGAACAGCTTTACCACACCTTTTT
TCCTGGACCTGTTGCAAGTAGAAACTGCCTTGCAAATCCACGGTAAGGTA
ACCGTAAGACACGAGGATGCCGAAGCCTTATTAAAATTATCACTACGATG
TCATGCGTGCGGTGCTGTGCAAAAAACGATTCCCGACCTTAAGCAGCATG
TAAAAGGTTGTGAATCAATGAACATAAATTCGAGTGAATCGCACTAG

Synonyms

Publications