EWM27445.1, cds3219 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|585109700|gb|EWM27445.1| (basic helix-loop-helix family protein [Nannochloropsis gaditana]) HSP 1 Score: 1035.02 bits (2675), Expect = 0.000e+0 Identity = 498/498 (100.00%), Postives = 498/498 (100.00%), Query Frame = 0
Query: 1 MKRATDKDVQSSVGDRATAKRSCALTNGAAANDREPAVVTLAIPNFGPAERVNASLQILTTSVANFLDSKFIVRLNESVGVLKPSKFVLELVVVKEAPDGDAAKLAARAGYVTRAMTCTITKPRQRLHQGEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSNSLQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCESMNINSSESH 498
MKRATDKDVQSSVGDRATAKRSCALTNGAAANDREPAVVTLAIPNFGPAERVNASLQILTTSVANFLDSKFIVRLNESVGVLKPSKFVLELVVVKEAPDGDAAKLAARAGYVTRAMTCTITKPRQRLHQGEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSNSLQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCESMNINSSESH
Sbjct: 1 MKRATDKDVQSSVGDRATAKRSCALTNGAAANDREPAVVTLAIPNFGPAERVNASLQILTTSVANFLDSKFIVRLNESVGVLKPSKFVLELVVVKEAPDGDAAKLAARAGYVTRAMTCTITKPRQRLHQGEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSNSLQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCESMNINSSESH 498
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|553183624|ref|XP_005853932.1| (purine nucleoside phosphoramidase, partial [Nannochloropsis gaditana CCMP526] >gi|553193742|ref|XP_005855826.1| purine nucleoside phosphoramidase, partial [Nannochloropsis gaditana CCMP526] >gi|422293235|gb|EKU20535.1| purine nucleoside phosphoramidase, partial [Nannochloropsis gaditana CCMP526] >gi|422295130|gb|EKU22429.1| purine nucleoside phosphoramidase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 376.711 bits (966), Expect = 4.103e-127 Identity = 179/182 (98.35%), Postives = 179/182 (98.35%), Query Frame = 0
Query: 213 LAMPPCQALASVLPDDWSNSLQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLR 394
LAMPPCQALASVLPD WSNSLQCTYETLIRVFLEQLVGKVTL QVLPQKMDSKTE NSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLR
Sbjct: 1 LAMPPCQALASVLPDGWSNSLQCTYETLIRVFLEQLVGKVTLRQVLPQKMDSKTEVNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLR 182
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|553183616|ref|XP_005853931.1| (aprataxin, partial [Nannochloropsis gaditana CCMP526] >gi|553193739|ref|XP_005855825.1| aprataxin, partial [Nannochloropsis gaditana CCMP526] >gi|422293234|gb|EKU20534.1| aprataxin, partial [Nannochloropsis gaditana CCMP526] >gi|422295129|gb|EKU22428.1| aprataxin, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 170.244 bits (430), Expect = 2.683e-48 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 398 HSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIP 478
HSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIP
Sbjct: 1 HSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIP 81
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|552924909|gb|ESA08827.1| (hypothetical protein GLOINDRAFT_208027 [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 155.992 bits (393), Expect = 2.330e-40 Identity = 80/188 (42.55%), Postives = 122/188 (64.89%), Query Frame = 0
Query: 302 GGGWHGALIRYLDHTPEL--RHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISR-LHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQ-KTIPDLKQHVK 485
GGW+ L+ Y PE+ + ++Y +E++ I+D YPKAK HLL+IP+ + I+++ EL K N ++ R L + + K++++ L RMG+H++PSLR LH+H++SQDF SP+LK K+HWNSFTT FF+D+ ++E L+ G+V E LLK L+CH C A K IPDLK+H++
Sbjct: 82 SGGWNNVLLPYC-QKPEMFPKSEVYYYDNEFVIIFDKYPKAKNHLLVIPRKQ---IDNIGELK--KQNLELVRALKEKGQWVIEKMKQENPKLFFRMGFHAVPSLRQLHMHVISQDFISPSLKNKKHWNSFTTEFFIDVEEIERILEKQGEVKFNKAYYEDLLKSPLKCHLCDAKSIKFIPDLKKHLE 263
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|1026977804|ref|XP_016608849.1| (hypothetical protein, variant [Spizellomyces punctatus DAOM BR117] >gi|907095145|gb|KND00810.1| hypothetical protein, variant [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 155.992 bits (393), Expect = 9.171e-38 Identity = 117/374 (31.28%), Postives = 173/374 (46.26%), Query Frame = 0
Query: 123 PRQRLHQGEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHK-AEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSNS------LQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKP--EFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGC 487
PR R+ QG+I + T + I V S + P+ + AG +L +A+ L+ K AE G YP+ + +S L + + VE V+ + P L PD SN L+ Y+ + F + L G T + K + P SL E D + P GG W+ AL Y H + + + I D YPKAK HLL++P+ + L + S +L + + A + ++ K L R+G+H++PS+R LH+H++SQDFDS ALK K+HWNSFT+ FFLD V + L G+V EA+LK L CH C + IP LK+H+ C
Sbjct: 233 PRFRVIQGDISRM--HTSQGLACRAIVVETSWRWKPSATASCKAVHERAGVELMQSAKQLYPKPAEIGKAYPVPVESTSPLFMDEHVEQVIHVVGP--NLNPKRPDCLSNDDDAVAKLETVYKAIFNSFAD-LRGLTTSDRTTDTKNAFSVLMSQPRTPVSLGD-EADVADMPK-----------SGGRWNDALRPYCLHPEQHPQDVLSYDDHLVVIRDKYPKAKKHLLILPRQPRDGLAVLSREDLP------LLDSMKRKADEVVNEMRKKDASLEFRIGFHAIPSMRQLHMHVISQDFDSAALKNKKHWNSFTSQFFLDFDTVRSMLDAKGQVRYNEATYEAMLKGPLLCHRCKTECRNIPSLKKHIAEC 583
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|1026977814|ref|XP_016608850.1| (hypothetical protein SPPG_03918 [Spizellomyces punctatus DAOM BR117] >gi|907095146|gb|KND00811.1| hypothetical protein SPPG_03918 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 156.377 bits (394), Expect = 2.932e-37 Identity = 117/374 (31.28%), Postives = 173/374 (46.26%), Query Frame = 0
Query: 123 PRQRLHQGEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHK-AEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSNS------LQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKP--EFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGC 487
PR R+ QG+I + T + I V S + P+ + AG +L +A+ L+ K AE G YP+ + +S L + + VE V+ + P L PD SN L+ Y+ + F + L G T + K + P SL E D + P GG W+ AL Y H + + + I D YPKAK HLL++P+ + L + S +L + + A + ++ K L R+G+H++PS+R LH+H++SQDFDS ALK K+HWNSFT+ FFLD V + L G+V EA+LK L CH C + IP LK+H+ C
Sbjct: 425 PRFRVIQGDISRM--HTSQGLACRAIVVETSWRWKPSATASCKAVHERAGVELMQSAKQLYPKPAEIGKAYPVPVESTSPLFMDEHVEQVIHVVGP--NLNPKRPDCLSNDDDAVAKLETVYKAIFNSFAD-LRGLTTSDRTTDTKNAFSVLMSQPRTPVSLGD-EADVADMPK-----------SGGRWNDALRPYCLHPEQHPQDVLSYDDHLVVIRDKYPKAKKHLLILPRQPRDGLAVLSREDLP------LLDSMKRKADEVVNEMRKKDASLEFRIGFHAIPSMRQLHMHVISQDFDSAALKNKKHWNSFTSQFFLDFDTVRSMLDAKGQVRYNEATYEAMLKGPLLCHRCKTECRNIPSLKKHIAEC 775
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|299115363|emb|CBN74191.1| (FHA-HIT protein [Ectocarpus siliculosus]) HSP 1 Score: 150.214 bits (378), Expect = 3.160e-36 Identity = 84/203 (41.38%), Postives = 123/203 (60.59%), Query Frame = 0
Query: 290 IPVYQH-PGQPLQGGG-WHGALIRYLDHTP---ELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGC 487
+P Y+ P P++G G W L +YL P EL+ +++ ++ + +YDGYPK++ HLLL+PKP+FL + +EL D+H + +LH+ A +A L + G+ +R GYH +PSL PLH+HI+SQDFDS L ++HWNSFTT FFLD VE L G + + E +AL LRC C + + LK+H+ GC
Sbjct: 265 LPEYRRTPPTPVKGAGHWKAVLFQYLKDEPMPVELQREVYFSDNQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGV-IRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKERLKALEATPLRCFRCHSPMTNMTKLKEHLLGC 466
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|1190996629|ref|XP_020878909.1| (transcription factor bHLH140 isoform X1 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 151.754 bits (382), Expect = 7.514e-36 Identity = 113/380 (29.74%), Postives = 179/380 (47.11%), Query Frame = 0
Query: 130 GEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSN-------SLQCTYETLIRVFLEQLVGKVTLPQVLPQ----------KMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGG--GWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQI-SRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCES 489
G+I L E G + VIA + P V FK AGP L R+ + PG + L + L +G+ +V+ + P + PD+ +N +L+ Y +L FL + + LP+ Q K DS+ + S DK +++ES + + G+ + G W AL H + + + + I D YPKA+ H+L++ + E +++ + ++ K N Q+ +H+ + + + L R+GYHS+PS+R LH+H++SQDFDS +LK K+HWNSFT+ FF D + V ++ GK V ED LLK LRC+ C + IP LK HV+ C S
Sbjct: 315 GDITKLRSE--GGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLEAATRVRANTLLPGKAAVVPLPSTCPLHNAEGITHVIHVLGP--NMNPNRPDNLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPKRSNQTALSDSGEDIKEDSER---NKKYKGSQDKAVTNNLESGSLEDTRDSGKKMSKGWSTWALALHSIAMHPERHENVVLEFSDNIVVINDQYPKARKHVLVLARQE--SLDGLEDVR--KENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFDSDSLKNKKHWNSFTSSFFRDSVDVLEEVKSQGKANVASED---LLKGELRCNRCRSAHPNIPKLKSHVRNCRS 680
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|1109156424|ref|XP_019084607.1| (PREDICTED: transcription factor bHLH140-like isoform X4 [Camelina sativa]) HSP 1 Score: 150.599 bits (379), Expect = 1.610e-35 Identity = 116/381 (30.45%), Postives = 181/381 (47.51%), Query Frame = 0
Query: 130 GEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSN-------SLQCTYETLIRVFLEQLVGKVTLPQVLPQ----------KMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPL--QGGGWHGALIRYLDHTPELRHFIFYETSE-WMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQI-SRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCES 489
G+I L E G + VIA + P V FK AGP L R+ + PG + L + L +G+ +V+ + P + PD+ SN +L+ Y +L FL + + P+ Q K DS+ + S DK +++ES + + G+ + + W AL H PE + E S+ + I D YPKA+ H+L++ + E +++ + ++ K N Q+ +H+ + + + L R+GYHS+PS+R LH+H++SQDFDS +LK K+HWNSFT+ FF D + V ++ GK V ED LLK LRC+ C + IP LK HV+ C S
Sbjct: 304 GDITKLRSE--GGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLLNAEGITHVIHVLGP--NMNPNRPDNLSNDYTKGCKTLREAYTSLFEGFLSVVQDQSKFPKRSNQTAVSDSGEHIKEDSE---RNKKYKGSQDKAVTNNMESGSLEDTRDSGKKMSKEWSTWALALHTIAMH-PERHENVVLEFSDNIVVINDQYPKARKHVLVLARQE--SLDGLEDVR--KENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFDSDSLKNKKHWNSFTSSFFRDSVDVLEEVKSQGKANVASED---LLKGELRCNRCRSAHPNIPKLKSHVRSCRS 669
BLAST of EWM27445.1 vs. NCBI_GenBank
Match: gi|1109156422|ref|XP_019084606.1| (PREDICTED: transcription factor bHLH140-like isoform X3 [Camelina sativa]) HSP 1 Score: 150.599 bits (379), Expect = 1.652e-35 Identity = 116/381 (30.45%), Postives = 181/381 (47.51%), Query Frame = 0
Query: 130 GEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSN-------SLQCTYETLIRVFLEQLVGKVTLPQVLPQ----------KMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPL--QGGGWHGALIRYLDHTPELRHFIFYETSE-WMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQI-SRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCES 489
G+I L E G + VIA + P V FK AGP L R+ + PG + L + L +G+ +V+ + P + PD+ SN +L+ Y +L FL + + P+ Q K DS+ + S DK +++ES + + G+ + + W AL H PE + E S+ + I D YPKA+ H+L++ + E +++ + ++ K N Q+ +H+ + + + L R+GYHS+PS+R LH+H++SQDFDS +LK K+HWNSFT+ FF D + V ++ GK V ED LLK LRC+ C + IP LK HV+ C S
Sbjct: 305 GDITKLRSE--GGLHCNVIANATNWRLKPGGGGVNAAIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLLNAEGITHVIHVLGP--NMNPNRPDNLSNDYTKGCKTLREAYTSLFEGFLSVVQDQSKFPKRSNQTAVSDSGEHIKEDSE---RNKKYKGSQDKAVTNNMESGSLEDTRDSGKKMSKEWSTWALALHTIAMH-PERHENVVLEFSDNIVVINDQYPKARKHVLVLARQE--SLDGLEDVR--KENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLHVISQDFDSDSLKNKKHWNSFTSSFFRDSVDVLEEVKSQGKANVASED---LLKGELRCNRCRSAHPNIPKLKSHVRSCRS 670 The following BLAST results are available for this feature:
BLAST of EWM27445.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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