rna3225, rna3225 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3225
Unique Name	rna3225
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2054
Alignment location	CM002460.1:1043271..1045437 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100107g4.4500.mrna
Orig protein id	gnl\|cribi\|Naga_100107g4.4500
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1043271..1045437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100107g4	gene3103	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3225	rna3225-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27446.1	cds3217	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1043271..1045437+
coding sequence from alignment at CM002460.1:1043271..1045437+

mRNA sequence

>rna3225 ID=rna3225|Name=rna3225|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp
CATGTCTTGCATCCCATGACAGCTCGTTGATAAATATTCTCCGCAGCGGT
AAAAGCGCGGGATTTGCAAGGCTGTCCTAGCATAGCTGTAGCGTGTGTCT
AGACAGACGCGGCGGACAGGAGGGGGAAAGGAGAGCGGAGAGTGCGTCGG
GAAGGGACTGTTCCGGTGGAAGCTGCTTTCATTCCTCCTTGGAGAATTTG
AACAAAAAGTCAGAAATTTGTTGGCGCGTGACAAAGTGGGAGTAAAAAGG
ACACGCTCCTAGTCATGATGATGAGAGCGCCATTACCCGCCACTGCGTCT
GCATTTCCCGGGCCGGGAGGAGGAGGAGGAGGAGGGAGCGGGATCGGCGG
TGGAGGTGGACAAGCGGGCAGTAGTCTACGAGGCGCTAACCCCTCGCGTA
TCCATGCCGCTGTACCAGCATTGGCGCCACAACAGCGGACAGTGGTGCTG
CAACGGATCTTGAAGGATCAGGCCACCTTCTTGGCGACTCAGAGCACCCC
GTCCGCAGACCTTGGTTCAGAGACATTGAGTTGGTACTGGGATTCGAGCG
AGAAGCGGACGCACAACCTGGAGTACATGTACCGGGCTATATTGAATTTT
TGCCTCTTTCGGGTTCCGATCCAGGACCGACGCATAGTCAAAGCCTTGAT
TTGCCTGTGTCAATCCTCCACGCAGGCATGTGCCTCTTCCCAGACCCGGT
GCGGTATCCCCAACTGGTTTACCTCGGCCTTGCTGCTGTGGATGACGTTG
CAGGAGTTTCAGGAACAGGCCTCCGCATCGCGGGGAGCGGAAGCCCCCAA
CAAGAAACCGGACCCGCCCCCCCCGATGCAGTCAGAAAGCGACCCGGATG
TGGAGGGGGGGAGGAATCCGGGGGAGGGACCAGCAGGCCATGTGGGAGGC
AAAGAAGAGGAGAGGAACAGCGGTAAAGGCGCAGGGAAAACGAATTGGAC
GATATTCTGCCCTTTTGTAAAGCAACAGTGCCGGCCGCAAGTCGTCACTT
TTCTCCACATCATCCGACTCCAGCTTCAAGCAGAGGAGTTCCTGTACATG
AAGCTTGAAAAACGAACGCCTCGGCTCTGGATCAGTCGCAGCGGCCTCCC
CGCCCTCCCCGTGGAGTGCCTGCTGGCGATTGTTCGGTTCGTCAAACAGA
TCTTTGAGGGGGATATGGAAATCGGAAGACTGGCGCAGAAGGCAGAAGGG
ACTGTTCTGGAGATCGTGGCTGAGCGGGGGGAGGAAAGGAAAAAAGAAGG
ATAGGTGGAGGGGGCGTGTGGGAAGGGAGACCTGTCATCAAGAGCGTAAA
GTGGCTTCAATTTGTGCATAGGTACATGAGAATAGGAAGAAGGTGAAGCA
AAGCGGTTTTCAAAGGTACATAAGGTGACAAACGGGAGGGGCAAGGTGTC
CTTGAAGGACAAATATGTACAACGAACAGAAGGTGGCGAAGCGAGGGACA
ACATAGCATGCATAAAGGAGGCGCTGCAGTAAATTATTTTAGAGAGATAC
CTGGAACAGTAGTCGCCTCCCTCGTCGGAGCCAGGCGATTATCTCCATCG
TTCTTTATATCTCTCCTCTCGTCATTCCTAATTTGAAAGAGCTTTACCGC
ACACAAATAAGAAACCAGGTTTGCGGACGGTTACATTCAGGACTTGCAGG
GCCCTGATATGTTGCATAGCAGCGAGAATTTGCACATTCTACACACAGAT
GTATAGCATTACAAAACGTATTTTTGTACCTTCGCTTACTATATCTCTGC
TTGGAGAGCTACATTTCTAGGGTGTGGTGGTCATCGGGGCGATTGTGGCA
ACGTTAGCTGAGTTGGAGGGACATAGACATAGCGATGGGATATGCGTATG
AATGGCACCACTTATAAAATTTCCAGTATTATCCTGTGCGAGACCTGCCT
GTCGTTCAGTCTTGAAGGGCAAAGAAAGAAGCAGACTTTGAACTCCCATC
GGGGTGGTCTTCTCGCCCGGACAGCGGCTAATCACTTTGACTCGTGCTCA
CGACTAGCAAGTTTTGACATGAACAGAATATATATATGCTCGCTATTATG
CCTC

protein sequence of rna3225

>rna3225-protein ID=rna3225-protein|Name=rna3225|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MSGKARLQRLGIIKLAFVGVVCLPLLLGHTVAFLIQVHTCSTTNPSSSLR
IGFTRKACLVAASTLTGSRTRPRRRDLKIGKPRPEVPDEAGDDDDSEGGG
GKRWVRVYPLGLGSYGGQTAVFLGRRKEVEKENGGRLEALPVPVFTSGDL
EMLQAAFREAERRRKTEAEGLQNSRGSKSQFKASSMWTGRHLSTKDNGFF
DNAPWEWAERMAREAGESGQSVPTVAATNVKKEAFDAFVFGKNVRADWTS
SPYALMLHVITRALGAAVSELLIDEEDSPRGPGITFGPVLTLQEEVGTAP
SEQGRAMLVDCLIDEVVGFALALNRAIKMPVDLYEGTAVASRVLGRGSDD
GILQLEAVGEGEEAAERRKENMMTVMENVRPAWEISSVEAFRSMDSRSKR
LCLIKSGADAIPKRRQGPQELDIALLPYLDETVRREARIALAVEREDWST
VSALEANKSERGRVKDRLRAALAEGNAAVVARLEEEYVRLTVAKMDPTQD
EGSYQKDLDQDDWYLRSRRT

mRNA from alignment at CM002460.1:1043271..1045437+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3225 ID=rna3225|Name=rna3225|organism=Nannochloropsis gaditana|type=mRNA|length=2167bp|location=Sequence derived from alignment at CM002460.1:1043271..1045437+ (Nannochloropsis gaditana)
CTTCACTTCTGTAGTGAGTTTATGTCAGGTAAAGCACGGCTTCAACGTCT
AGGGATCATAAAACTCGCCTTTGTTGGTGTCGTCTGCCTGCCTCTCCTAC
TTGGACACACCGTCGCATTTCTCATCCAAGTGCATACCTGCAGTACAACA
AACCCGTCGTCATCCCTCCGAATCGGCTTCACACGCAAAGCATGCCTTGT
TGCTGCTAGCACACTGACAGGATCACGCACACGCCCCCGGCGTCGTGATC
TTAAGATCGGTAAGCCACGCCCGGAAGTACCCGATGAGGCTGGCGATGAC
GACGACtcagaggggggaggagggaaaagatgggTGCGAGTGTACCCTCT
CGGGCTGGGATCATACGGCGGACAGACGGCAGTTTTTTTAGGGCGGCGGA
AAGAGGTCGAAAAAGAGAATGGTGGGCGCCTGGAGGCTTTGCCAGTACCG
GTCTTCACCTCCGGCGACTTGGAGATGCTGCAAGCAGCATTTCGAGAAGC
TGAACGAAGACGGAaaacggaggcggagggattGCAGAACAGCCGGGGCT
CTAAGAGCCAATTCAAAGCATCTTCGATGTGGACGGGCAGGCATTTGTCC
ACCAAAGACAACGGCTTTTTCGATAACGCGCCCTGGGAGTGGGCAGAAAG
GATGGctagggaggcaggagaaagcgggcAGAGCGTGCCGACCGTTGCAG
CGACGAATGTTAAAAAGGAAGCGTTCGACGCCTTTGTTTTCGGTAAGAAT
GTACGGGCAGActggacctcctctccttacGCACTGATGCTGCACGTCAT
CACACGGGCCCTTGGCGCCGCGGTTTCGGAGCTGTTGATCGATGAGGAAG
ACAGCCCCCGGGGTCCGGGAATTACCTTCGGTCCTGTACTTACATtgcaa
gaggaggtgaggaaataggaaaggaagggttcaggggggaggggagatgc
cTCTTATGGCGTGCTTGTCCAGTACAGGCCACAGGGGCAGTCTGTAGACC
GGCTTGAGCTGCTCCTATTCGACGCCCTTTTTCGTTTCATTCCCCccgtc
tcttctttttttccaccGCCCACCACCGTACAGGTGGGCACGGCACCCTC
CGAGCAGGGGCGGGCCATGCTGGTAGATTGCCTCATTGATGAGGTGGTGG
GATTCGCCTTAGCGCTCAACCGAGCCATCAAGATGCCCGTGGACCTGTAC
GAGGGGACGGCGGTAGCTTCCCGGGTCCTAGGACGGGGTTCTGATGATGG
TATCCTGCAATtagaggcggtgggggagggggaagaagcggcggagaggc
ggaaggagaacatGATGACGGTGATGGAAAACGTCCGGCCAGCATGGGAA
ATTTCATCGGTGGAGGCCTTTCGGAGCATGGACAGTCGCAGCAAGAGGCT
GTGCCTGATCAAAAGCGGGGCGGACGCGATCCCCAAGAGGAGACAAGGGC
CCCAGGAACTCGACATTGCCCTGCTTCCCTACCTGGACGAAACTGTGCGC
CGGGAAGCTCGCATTGCCTTGGCGGTAGAACGGGAGGATTGGAGCACCGT
GTCAGCCTTGGAAGCGAACAAAAGCGAACGTGGGCGGGTCAAGGACCGGT
TGCgcgcggccctggcggaagggaacgccgccgtggtggcccggttggaa
gaggagtaCGTCCGATTGACGGTGGCGAAGATGGATCCCACCCAGGACGA
AGGCTCTTACCAGAAGGACTTGGACCAAGACGATTGGTACCTTAGAAGCC
GACGGACATGATTGACGCGGTAGGTGGATCGGGTTGGAGTTGGCATCTCG
GAGAgcgaggtgaggaggagccaCCTTGAGGGCTGCTTAGCTTTTGATAC
GATTGGGAGATggaagggcgaagggagacaTAGATGTGACGCTTGGAGGG
ACAGAAATgatgagaagaagggggggcgtgACAGCATATGTGAAACAAGT
CGTGAAAAGGAAGGCGTCGAAGTGGAAGAGTCCTACCCCTGGGAGCCAGA
GATGCCTCCCTATCCACGGAAACTCCCAGGGTGCCTCATGTGCTCTTTGT
GTGTAAACATCTTCCTACCCATCTAATTTTGTCTGTCTTCTGGTACAAAA
ACATGCTGGGTTGCCCCTTGCTTCGTCCACGGTCATTTGACAATAAACCA
CTTCGATCTTGCAACGT

Coding sequence (CDS) from alignment at CM002460.1:1043271..1045437+

>rna3225 ID=rna3225|Name=rna3225|organism=Nannochloropsis gaditana|type=CDS|length=3126bp|location=Sequence derived from alignment at CM002460.1:1043271..1045437+ (Nannochloropsis gaditana)
ATGTCAGGTAAAGCACGGCTTCAACGTCTAGGGATCATAAAACTCGCCTT
TGTTGGTGTCGTCTGCCTGCCTCTCCTACTTGGACACACCGTCGCATTTC
TCATCCAAGTGCATACCTGCAGTACAACAAACCCGTCGTCATCCCTCCGA
ATCGGCTTCACACGCAAAGCATGCCTTGTTGCTGCTAGCACACTGACAGG
ATCACGCACACGCCCCCGGCGTCGTGATCTTAAGATCGGTAAGCCACGCC
CGGAAGTACCCGATGAGGCTGGCGATGACGACGACtcagaggggggagga
gggaaaagatgggTGCGAGTGTACCCTCTCGGGCTGGGATCATACGGCGG
ACAGACGGCAGTTTTTTTAGGGCGGCGGAAAGAGGTCGAAAAAGAGAATG
GTGGGCGCCTGGAGGCTTTGCCAGTACCGGTCTTCACCTCCGGCGACTTG
GAGATGCTGCAAGCAGCATTTCGAGAAGCTGAACGAAGACGGAaaacgga
ggcggagggattGCAGAACAGCCGGGGCTCTAAGAGCCAATTCAAAGCAT
CTTCGATGTGGACGGGCAGGCATTTGTCCACCAAAGACAACGGCTTTTTC
GATAACGCGCCCTGGGAGTGGGCAGAAAGGATGGctagggaggcaggaga
aagcgggcAGAGCGTGCCGACCGTTGCAGCGACGAATGTTAAAAAGGAAG
CGTTCGACGCCTTTGTTTTCGGTAAGAATGTACGGGCAGActggacctcc
tctccttacGCACTGATGCTGCACGTCATCACACGGGCCCTTGGCGCCGC
GGTTTCGGAGCTGTTGATCGATGAGGAAGACAGCCCCCGGGGTCCGGGAA
TTACCTTCGGTCCTGTACTTACATtgcaagaggagGTGGGCACGGCACCC
TCCGAGCAGGGGCGGGCCATGCTGGTAGATTGCCTCATTGATGAGGTGGT
GGGATTCGCCTTAGCGCTCAACCGAGCCATCAAGATGCCCGTGGACCTGT
ACGAGGGGACGGCGGTAGCTTCCCGGGTCCTAGGACGGGGTTCTGATGAT
GGTATCCTGCAATtagaggcggtgggggagggggaagaagcggcggagag
gcggaaggagaacatGATGACGGTGATGGAAAACGTCCGGCCAGCATGGG
AAATTTCATCGGTGGAGGCCTTTCGGAGCATGGACAGTCGCAGCAAGAGG
CTGTGCCTGATCAAAAGCGGGGCGGACGCGATCCCCAAGAGGAGACAAGG
GCCCCAGGAACTCGACATTGCCCTGCTTCCCTACCTGGACGAAACTGTGC
GCCGGGAAGCTCGCATTGCCTTGGCGGTAGAACGGGAGGATTGGAGCACC
GTGTCAGCCTTGGAAGCGAACAAAAGCGAACGTGGGCGGGTCAAGGACCG
GTTGCgcgcggccctggcggaagggaacgccgccgtggtggcccggttgg
aagaggagtaCGTCCGATTGACGGTGGCGAAGATGGATCCCACCCAGGAC
GAAGGCTCTTACCAGAAGGACTTGGACCAAGACGATTGGTACCTTAGAAG
CCGACGGACATGAATGTCAGGTAAAGCACGGCTTCAACGTCTAGGGATCA
TAAAACTCGCCTTTGTTGGTGTCGTCTGCCTGCCTCTCCTACTTGGACAC
ACCGTCGCATTTCTCATCCAAGTGCATACCTGCAGTACAACAAACCCGTC
GTCATCCCTCCGAATCGGCTTCACACGCAAAGCATGCCTTGTTGCTGCTA
GCACACTGACAGGATCACGCACACGCCCCCGGCGTCGTGATCTTAAGATC
GGTAAGCCACGCCCGGAAGTACCCGATGAGGCTGGCGATGACGACGACtc
agaggggggaggagggaaaagatgggTGCGAGTGTACCCTCTCGGGCTGG
GATCATACGGCGGACAGACGGCAGTTTTTTTAGGGCGGCGGAAAGAGGTC
GAAAAAGAGAATGGTGGGCGCCTGGAGGCTTTGCCAGTACCGGTCTTCAC
CTCCGGCGACTTGGAGATGCTGCAAGCAGCATTTCGAGAAGCTGAACGAA
GACGGAaaacggaggcggagggattGCAGAACAGCCGGGGCTCTAAGAGC
CAATTCAAAGCATCTTCGATGTGGACGGGCAGGCATTTGTCCACCAAAGA
CAACGGCTTTTTCGATAACGCGCCCTGGGAGTGGGCAGAAAGGATGGcta
gggaggcaggagaaagcgggcAGAGCGTGCCGACCGTTGCAGCGACGAAT
GTTAAAAAGGAAGCGTTCGACGCCTTTGTTTTCGGTAAGAATGTACGGGC
AGActggacctcctctccttacGCACTGATGCTGCACGTCATCACACGGG
CCCTTGGCGCCGCGGTTTCGGAGCTGTTGATCGATGAGGAAGACAGCCCC
CGGGGTCCGGGAATTACCTTCGGTCCTGTACTTACATtgcaagaggagGT
GGGCACGGCACCCTCCGAGCAGGGGCGGGCCATGCTGGTAGATTGCCTCA
TTGATGAGGTGGTGGGATTCGCCTTAGCGCTCAACCGAGCCATCAAGATG
CCCGTGGACCTGTACGAGGGGACGGCGGTAGCTTCCCGGGTCCTAGGACG
GGGTTCTGATGATGGTATCCTGCAATtagaggcggtgggggagggggaag
aagcggcggagaggcggaaggagaacatGATGACGGTGATGGAAAACGTC
CGGCCAGCATGGGAAATTTCATCGGTGGAGGCCTTTCGGAGCATGGACAG
TCGCAGCAAGAGGCTGTGCCTGATCAAAAGCGGGGCGGACGCGATCCCCA
AGAGGAGACAAGGGCCCCAGGAACTCGACATTGCCCTGCTTCCCTACCTG
GACGAAACTGTGCGCCGGGAAGCTCGCATTGCCTTGGCGGTAGAACGGGA
GGATTGGAGCACCGTGTCAGCCTTGGAAGCGAACAAAAGCGAACGTGGGC
GGGTCAAGGACCGGTTGCgcgcggccctggcggaagggaacgccgccgtg
gtggcccggttggaagaggagtaCGTCCGATTGACGGTGGCGAAGATGGA
TCCCACCCAGGACGAAGGCTCTTACCAGAAGGACTTGGACCAAGACGATT
GGTACCTTAGAAGCCGACGGACATGA

Synonyms

Publications