rna3223, rna3223 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3223
Unique Name	rna3223
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1755
Alignment location	CM002460.1:1037980..1039826 -

Link to JBrowse

Properties


Property Name	Value
Product	soluble nsf attachment protein gamma isoform
Orig transcript id	gnl\|cribi\|Naga_100107g1.4506.mrna
Orig protein id	gnl\|cribi\|Naga_100107g1.4506
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1037980..1039826 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100107g1	gene3101	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3223	rna3223-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27452.1	cds3215	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1037980..1039826-
coding sequence from alignment at CM002460.1:1037980..1039826-

mRNA sequence

>rna3223 ID=rna3223|Name=rna3223|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp
ATGGCCCCCGCCTCCTCCCACACGGTCTTCCACACCCTCCCCGTCCGGGC
AGGACCCGCCACTCCCCTGGCCGTTCGTCTCTTCCATTGGGTGGAGGGTA
CCCCCCTCGTCGACGTCCCCTTCCCGCCCCTCCCTCCTCCTTCCTCCCCC
CCTCCGGCCTCCCTCCCTCCCTCCCTCCCACCCCAGGCCGCTGCCCTGCT
TGCAGCAGGGCGGTACCTCAGTCGTATCGAGCAAGCGCTCACGGGGTTCG
ACCATCCGGGTAGTCATCGTCGACACATGTGGGACGTGCGTCATTTCGCC
TCCTTAAGACCCTGGACCAGGTACCTCCCGGAAGAAGGCGGGAAACGCGC
CTTGGTCGTCTCGGTCCTTGAAGCCTTCGTGCGGGAGGTGGTCCCCGTGG
CGGAGGGCGGGGGGGAGGGCCTTCGGATGGACTCAAGCCAAGCAGGGGAG
GAAAGGGCCGTGGCTGGTTTTCGGGAGGGTGTGATCATGGGGGACTGGAA
CGACGCCAACATCATCGTGGCTCCAAGAGCCCCCTCCCAGGTGCGTGGAT
TGATCGACCTGGGCGACGCTCTCTGGAGCTGGCAAGTCAACGAGGTGGCC
ATCGCCATGGCTTACGCCGCCGTCTCTGCCCTGGGAAAAGCTTACCCCGT
CCAGGCAGCGGCCTTGCTTTTGAGGGGTTGGGCGGCGGGGAGCTCGACGT
TGCCTCGGAGGGAGGGGGCCCACCTCCGCACCCTGGCATGCGCTCGTCTT
GCCATCAGCGTCACCTTGGGTGCGTACTCCTTCGCGCAAAATCCTGAGAA
TAAGTATTTGTTGATCCATGCCCAGCCAGCCTGGAGCGCCTTGAGGACCT
TGTGGGGATCGGAACGGAAGAGGGTGGAGGAAGTGTTTACGATGGCGTGG
GAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGGGGAAGGAGGAGGATGC
GGTGTTCTGGGAGAGGATCATCTTAAAAGGCTTTCCTCTTGTAGGCGAGG
AAAAAACAAATTGGTAAAAGCTGATCGTGATCGGCTCGAGGTCGGTGTCT
TTGGGCACGCTGTCGTGCCTGCGGGCTTCTTCGGTTACAGGGAGTCTATT
CACAGTGTATGGGACAGGCCCTATCTATACATGACTGGAGGCATTGATGT
ACCGAAAGACTCATTGAAGACGACCTCGTCTGCATTTTGGCGAAATCACT
TTGCCGTTTGCCTCCCTCCCGCTCCCACGCCCGGAAAGGGCTTGAGGGGA
AAGCAGGGGGGGAACCCAGAAGAGGCAGGCTCCGGCCTTGATCTCTATCC
CTTCCTCCCCCCTCAGGGCAGGTACGTGTCGCGTCCCCATCTCCCCACTC
GATAGCTAGCGTTATCCACACTTTCCTTCCTTCCCGCCCCATCACGTCAT
GGCCCTCCTGACCGCTTTCCGCCGACGGCCCTCCCCCCCGCCCTCGGCCA
CCGCCGCGCCCTCCCTCACGACTTGAGCAGCTCCCCGACCGTATTGATGC
CGCACAAAAGGGTCAGGATAGCCCCCCCCACGCACACACACCAGGCCCAA
GCCCGTTTCACCCGTTGCTCCCGACAGCCCACGCGTAAGTAAGCAAGGGG
GGGAAGGACGAAGGAGATGGCAAAGCAGGCAAAGGAGCCCAGGACGGCCC
ATATGCTCGCCACCGAGTCGACCCGTATGGCCAGGAAAAGGATGGGGAGG
AGGAGCAAGTAGGTGAGGAGGAGGAGGGGGAGGCGGTGCGTGGCGTTGGT
AGGGA

protein sequence of rna3223

>rna3223-protein ID=rna3223-protein|Name=rna3223|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MSTFSSDRSALFAKSTDGKGSKSTSPNRPGTTSTFTTPSARGSSTLSSTR
HTPLSSYRTGDVAAAVPKRMNLEKLKEAEQWRVKAVKTLKTSLFGNWQPD
YLSAAPYFDKAASLYKAAGAEEQAKAAYMKSAECNEKTSTYAAAAMAYRN
AAQIAKVEEEEEAAGELLAREADMWVLQGDVGRAADSLVKAGVQVEDACP
KQAVAYCLQGVSWLAPDQGESVDLRSAPLASDVLSRSLNLCLRNEQVHPA
LDISDKAGRVLRAQGLTSSLYKMYCTTTVLQLYIGDVVAADKTFLEVHLQ
DSGYIRSVECECAENLLSAAKGLSRTALEGAVHALSRAYLDNSVLKFARR
LTVDRISGGLGGEEEEEEEEEEEKEGRNGGPQHGGMGPSLSAPEAPLLLL
LLPALSLLRPGPFPQGRSCRGGRLPPPCRPNLPLPPPLFPLPPPSSSNGA
KPKHRPLLPPRSQGGSLFLLNLPR

mRNA from alignment at CM002460.1:1037980..1039826-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3223 ID=rna3223|Name=rna3223|organism=Nannochloropsis gaditana|type=mRNA|length=1847bp|location=Sequence derived from alignment at CM002460.1:1037980..1039826- (Nannochloropsis gaditana)
AAGGATGAAATGGAGGGAAACATTTTGATAATAAGATTTACACACCAGCT
CAGGGATTGTGTTTGTTTTCATCTGTCAATTTTTTCCTTGCCAGGTACCT
CGCGGATTGCCTCGAGGACTTACGAACAAACAGCCCTCTTCAAGCAAGCA
AGTCAAAGTTTTCCGCACGGACTCTTTCGACGCAAAAACTGAAAGGTTTT
CATCTCAAGTGGTGACATGAGCACTTTTTCAAGTGACCGCAGCGCTCTTT
TTGCCAAGAGCACAGACGGCAAAGGGAGCAAGTCCACATCTCCGGTACGT
GCTTGCTCTGGTGCTTGACGCGTACGATTAAATCTGGGGCTATCTCTCCT
TTCGGCATTGTGCGTAGAAACCAGAATCGATGTTAAAGCTGCGCTGTTTT
TCATTCTGTAACATCTTGCAGAATCGGCCAGGCACCACGAGCACATTTAC
AACACCTTCGGCAAGGGGGTCCTCCACTTTGTCTTCTACTCGCCACACCC
CTCTATCCTCTTACCGAACGGGCGATGTGGCTGCTGCTGTACCGAAGAGG
ATGAATCTAGAAAAACTTAAGGAAGCGGAGCAGTGGCGCGTGAAAGCTGT
GAAAACGTTGAAAACCTCCTTGTTTGGAAATTGGCAGCCTGATTATCTGT
CAGCTGCGCCGTATTTCGACAAAGCTGCATCGTTGTACAAGGCAGCGGGG
GCGGAGGAGCAGGCAAAGGCAGCATATATGAAATCCGCGGAATGCAACGA
AAAAACTAGCACGTATGCGGCCGCGGCCATGGCGTACCGAAATGCTGCTC
AAATTGCCAAAGTGGAGGAGGAGGAAGAAGCAGCCGGAGAGCTCTTGGCA
CGAGAGGCAGACATGTGGGTGCTGCAGGGCGACGTGGGCCGCGCCGCTGA
CTCCCTGGTCAAAGCTGGAGTCCAGGTGGAAGACGCCTGCCCCAAACAGG
CCGTTGCGTACTGCCTCCAAGGCGTTTCCTGGCTCGCACCCGACCAAGGA
GAAAGCGTCGACCTCCGGAGCGCCCCCTTGGCCAGCGACGTGCTGAGCCG
ATCCCTCAATCTGTGTCTTAGGAACGAACAGGTGCATCCTGCCCTCGACA
TCTCCGACAAGGCGGGGCGGGTTTTGCGGGCGCAGGGCCTGACCTCCTCT
CTGTACAAGATGTACTGTACCACCACGGTCCTACAGCTGTACATCGGCGA
TGTGGTCGCCGCGGACAAGACTTTCTTGGAGGTGCATCTGCAGGACTCTG
GGTACATCCGTTCGGTGGAGTGTGAGTGCGCCGAGAATTTGTTGTCAGCC
GCCAAGGGCCTGTCGAGGACGGCCTTGGAGGGGGCAGTCCACGCGCTCTC
CCGGGCGTATTTGGACAACAGCGTCCTCAAATTCGCCCGACGCTTGACAG
TGGATCGGATCTCGGGGGGGCTGGGGGGGGAAGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAGAAGGAGGGAAGGAACGGCGGACCGCAGCATGGGGGAAT
GGGCCCTTCTCTAAGTGCCCCCGAAGCCCCCCTTCTCCTCCTCCTCCTTC
CGGCCTTGAGCCTCCTGAGGCCAGGGCCATTCCCACAGGGACGCAGTTGC
CGGGGAGGCCGCCTGCCCCCCCCATGCCGCCCAAACCTGCCGCTTCCTCC
TCCGCTTTTTCCTCTTCCTCCTCCTTCCTCTTCGAACGGAGCAAAGCCGA
AGCACCGTCCCCTCCTCCCTCCACGTTCCCAGGGAGGCAGCCTTTTTCTC
CTGAATCTCCCTCGTTGAGTCAGACTTTCCTGGACATGACAGACCTGCAA
GCCGAAGTGTTGAATTACGGGTGTCGGGAGGGAACGAGGGAAGAGGA

Coding sequence (CDS) from alignment at CM002460.1:1037980..1039826-

>rna3223 ID=rna3223|Name=rna3223|organism=Nannochloropsis gaditana|type=CDS|length=2850bp|location=Sequence derived from alignment at CM002460.1:1037980..1039826- (Nannochloropsis gaditana)
AATCGGCCAGGCACCACGAGCACATTTACAACACCTTCGGCAAGGGGGTC
CTCCACTTTGTCTTCTACTCGCCACACCCCTCTATCCTCTTACCGAACGG
GCGATGTGGCTGCTGCTGTACCGAAGAGGATGAATCTAGAAAAACTTAAG
GAAGCGGAGCAGTGGCGCGTGAAAGCTGTGAAAACGTTGAAAACCTCCTT
GTTTGGAAATTGGCAGCCTGATTATCTGTCAGCTGCGCCGTATTTCGACA
AAGCTGCATCGTTGTACAAGGCAGCGGGGGCGGAGGAGCAGGCAAAGGCA
GCATATATGAAATCCGCGGAATGCAACGAAAAAACTAGCACGTATGCGGC
CGCGGCCATGGCGTACCGAAATGCTGCTCAAATTGCCAAAGTGGAGGAGG
AGGAAGAAGCAGCCGGAGAGCTCTTGGCACGAGAGGCAGACATGTGGGTG
CTGCAGGGCGACGTGGGCCGCGCCGCTGACTCCCTGGTCAAAGCTGGAGT
CCAGGTGGAAGACGCCTGCCCCAAACAGGCCGTTGCGTACTGCCTCCAAG
GCGTTTCCTGGCTCGCACCCGACCAAGGAGAAAGCGTCGACCTCCGGAGC
GCCCCCTTGGCCAGCGACGTGCTGAGCCGATCCCTCAATCTGTGTCTTAG
GAACGAACAGGTGCATCCTGCCCTCGACATCTCCGACAAGGCGGGGCGGG
TTTTGCGGGCGCAGGGCCTGACCTCCTCTCTGTACAAGATGTACTGTACC
ACCACGGTCCTACAGCTGTACATCGGCGATGTGGTCGCCGCGGACAAGAC
TTTCTTGGAGGTGCATCTGCAGGACTCTGGGTACATCCGTTCGGTGGAGT
GTGAGTGCGCCGAGAATTTGTTGTCAGCCGCCAAGGGCCTGTCGAGGACG
GCCTTGGAGGGGGCAGTCCACGCGCTCTCCCGGGCGTATTTGGACAACAG
CGTCCTCAAATTCGCCCGACGCTTGACAGTGGATCGGATCTCGGGGGGGC
TGGGGGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGGA
AGGAACGGCGGACCGCAGCATGGGGGAATGGGCCCTTCTCTAAGTGCCCC
CGAAGCCCCCCTTCTCCTCCTCCTCCTTCCGGCCTTGAGCCTCCTGAGGC
CAGGGCCATTCCCACAGGGACGCAGTTGCCGGGGAGGCCGCCTGCCCCCC
CCATGCCGCCCAAACCTGCCGCTTCCTCCTCCGCTTTTTCCTCTTCCTCC
TCCTTCCTCTTCGAACGGAGCAAAGCCGAAGCACCGTCCCCTCCTCCCTC
CACGTTCCCAGGGAGGCAGCCTTTTTCTCCTGAATCTCCCTCGTTGAATG
AGCACTTTTTCAAGTGACCGCAGCGCTCTTTTTGCCAAGAGCACAGACGG
CAAAGGGAGCAAGTCCACATCTCCGAATCGGCCAGGCACCACGAGCACAT
TTACAACACCTTCGGCAAGGGGGTCCTCCACTTTGTCTTCTACTCGCCAC
ACCCCTCTATCCTCTTACCGAACGGGCGATGTGGCTGCTGCTGTACCGAA
GAGGATGAATCTAGAAAAACTTAAGGAAGCGGAGCAGTGGCGCGTGAAAG
CTGTGAAAACGTTGAAAACCTCCTTGTTTGGAAATTGGCAGCCTGATTAT
CTGTCAGCTGCGCCGTATTTCGACAAAGCTGCATCGTTGTACAAGGCAGC
GGGGGCGGAGGAGCAGGCAAAGGCAGCATATATGAAATCCGCGGAATGCA
ACGAAAAAACTAGCACGTATGCGGCCGCGGCCATGGCGTACCGAAATGCT
GCTCAAATTGCCAAAGTGGAGGAGGAGGAAGAAGCAGCCGGAGAGCTCTT
GGCACGAGAGGCAGACATGTGGGTGCTGCAGGGCGACGTGGGCCGCGCCG
CTGACTCCCTGGTCAAAGCTGGAGTCCAGGTGGAAGACGCCTGCCCCAAA
CAGGCCGTTGCGTACTGCCTCCAAGGCGTTTCCTGGCTCGCACCCGACCA
AGGAGAAAGCGTCGACCTCCGGAGCGCCCCCTTGGCCAGCGACGTGCTGA
GCCGATCCCTCAATCTGTGTCTTAGGAACGAACAGGTGCATCCTGCCCTC
GACATCTCCGACAAGGCGGGGCGGGTTTTGCGGGCGCAGGGCCTGACCTC
CTCTCTGTACAAGATGTACTGTACCACCACGGTCCTACAGCTGTACATCG
GCGATGTGGTCGCCGCGGACAAGACTTTCTTGGAGGTGCATCTGCAGGAC
TCTGGGTACATCCGTTCGGTGGAGTGTGAGTGCGCCGAGAATTTGTTGTC
AGCCGCCAAGGGCCTGTCGAGGACGGCCTTGGAGGGGGCAGTCCACGCGC
TCTCCCGGGCGTATTTGGACAACAGCGTCCTCAAATTCGCCCGACGCTTG
ACAGTGGATCGGATCTCGGGGGGGCTGGGGGGGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGAAGGAGGGAAGGAACGGCGGACCGCAGCATGGGG
GAATGGGCCCTTCTCTAAGTGCCCCCGAAGCCCCCCTTCTCCTCCTCCTC
CTTCCGGCCTTGAGCCTCCTGAGGCCAGGGCCATTCCCACAGGGACGCAG
TTGCCGGGGAGGCCGCCTGCCCCCCCCATGCCGCCCAAACCTGCCGCTTC
CTCCTCCGCTTTTTCCTCTTCCTCCTCCTTCCTCTTCGAACGGAGCAAAG
CCGAAGCACCGTCCCCTCCTCCCTCCACGTTCCCAGGGAGGCAGCCTTTT
TCTCCTGAATCTCCCTCGTTGAATGAGCACTTTTTCAAGTGACCGCAGCG
CTCTTTTTGCCAAGAGCACAGACGGCAAAGGGAGCAAGTCCACATCTCCG

Synonyms

Publications