rna3220, rna3220 (mRNA) Nannochloropsis gaditana

Overview
Namerna3220
Unique Namerna3220
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length366
Alignment locationCM002460.1:1030726..1031500 +

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Properties
Property NameValue
ProductAmino acid transporter, transmembrane
Orig transcript idgnl|cribi|Naga_100257g12.9925.mrna
Orig protein idgnl|cribi|Naga_100257g12.9925
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1030726..1031500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100257g12gene3098Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3220rna3220-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27461.1cds3212Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3220 ID=rna3220|Name=rna3220|organism=Nannochloropsis gaditana|type=mRNA|length=366bp
ATGCGTTCTTGCAATATCGAAAAAGGGAGCAGGGCGGTAGCGGAATGTTC
TACACGATTATCAAGCGGATCCCAGGCAGCCAGGGCACCAAGGTCTTCGT
CGGCACAACACTCATGCTTACAGTGGGCTGTTTACCGTTCTGGATCAAGC
GATTCAAAAATTCAGAGAGCAGGGCGGGTCATGATCTTTTCTCTTCAGAA
AAACCTGAAGCGATCGAGCGTATGGAGGAAGAAAGGAAGGAGAAAATTCT
TACAAAGGTTGCGTGAGAGGACGTATCGCAAATTGCATGAACTTAAAAGA
AAATTTGTTTCGTTGTATTGTTTCCACAAACTGGAACGTTGTCGGTGTCC
CAACTTTTCGTTGTAG
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protein sequence of rna3220

>rna3220-protein ID=rna3220-protein|Name=rna3220|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVV
GGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYE
GVMKAGTWA
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mRNA from alignment at CM002460.1:1030726..1031500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3220 ID=rna3220|Name=rna3220|organism=Nannochloropsis gaditana|type=mRNA|length=775bp|location=Sequence derived from alignment at CM002460.1:1030726..1031500+ (Nannochloropsis gaditana)
TGGTCGCGTCGTGCGTTTAATGCCGCACTTCCCGTAATTTGCCTTCCTCA
ACTTGTGTACACGTCCTACAAGTATGCAGGGCTTTTCACGCAGCCACGGC
ACCGACAGCAACAGCGGTAGCAACAATCGCGAAAGCGGTGCTTTGTTCTA
CAATAACATGGACTATCGCAGCTTGCAGGACACTGCTTTGTCACGCGGGA
GTCAGGAGCATCAGGATGGAGCGGCAGGCGCGGGTTCCTGCCGCCAGCTC
CATGGCATTGACGGCTTGGATTTTCACTCGCGCTGGCGCACAACCCAGCT
GCGGCCGGCGGTCTTCTCATTGGTGAACACAGGTATGTCGCTTATGGACA
GGGTAGATCCTATCGAAGCTTCCGCTGCGTGAGCGTTTTTGGTAAGAAGC
GGACGGGCAAAGAGTAGCGTCCAACATCCTTTTGAAGGGCGATCAAAGCA
TGCGACCATGTACGATTGAGGGGTGGTTGAAGTTTCTGTATCCCCACCTG
CCTCTCTACGGCACtgattttcttcctttccctgcaCACAACCCCTCCAC
ACGGCTTGCCGCCTCCCCACattgtcttctccctctcgcaccagtggtgg
ggggggggacgcttTCGCTGGCCTACTCCTtcgccaaggcggggagTGTG
GTAGGCATATTGGTCCTAGCGCTGATCTGTGTTGCCACTGacttctctct
ctttgccATGGTCTCTGCCAGCCGCCGCACGGGCCAGAAGTCGTACGAAG
GGGTCATGAAGGCCGGTACGTGGGC
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Coding sequence (CDS) from alignment at CM002460.1:1030726..1031500+

>rna3220 ID=rna3220|Name=rna3220|organism=Nannochloropsis gaditana|type=CDS|length=326bp|location=Sequence derived from alignment at CM002460.1:1030726..1031500+ (Nannochloropsis gaditana)
ATGCGACCATGTACGATTGAGGGGTGGTTGAAGTTTCTGTATCCCCACCT
GCCTCTCTACGGCACtgattttcttcctttccctgcaCACAACCCCTCCA
CACGGCTTGCCGCCTCCCCACattgtcttctccctctcgcaccagtggtg
gggggggggacgcttTCGCTGGCCTACTCCTtcgccaaggcggggagTGT
GGTAGGCATATTGGTCCTAGCGCTGATCTGTGTTGCCACTGacttctctc
tctttgccATGGTCTCTGCCAGCCGCCGCACGGGCCAGAAGTCGTACGAA
GGGGTCATGAAGGCCGGTACGTGGGC
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Synonyms
Publications