EWM27461.1, cds3212 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|585109721|gb|EWM27461.1| (Amino acid transporter, transmembrane, partial [Nannochloropsis gaditana]) HSP 1 Score: 221.861 bits (564), Expect = 2.291e-73 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 Query: 1 MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMKAGTWA 109 MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMKAGTWA Sbjct: 1 MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMKAGTWA 109
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|301122403|ref|XP_002908928.1| (sodium-coupled neutral amino acid transporter, putative [Phytophthora infestans T30-4] >gi|262099690|gb|EEY57742.1| sodium-coupled neutral amino acid transporter, putative [Phytophthora infestans T30-4]) HSP 1 Score: 56.6102 bits (135), Expect = 4.414e-7 Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0 Query: 28 PAHNPSTRLAASPHCLLPL-APVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMK 104 P + +TR A +P + L + ++GGG LSL ++F K G VV ++ + + A+ FSL+ +VS SRR SYE V++ Sbjct: 255 PGPHATTRTATAPSAIFNLVSTIIGGGILSLPFAFDKCGLVVALIFMVIAASASTFSLYVIVSCSRRGSAASYEEVVR 332
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|695427612|ref|XP_009529741.1| (hypothetical protein PHYSODRAFT_509419 [Phytophthora sojae] >gi|348676174|gb|EGZ15992.1| hypothetical protein PHYSODRAFT_509419 [Phytophthora sojae]) HSP 1 Score: 55.8398 bits (133), Expect = 8.030e-7 Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0 Query: 28 PAHNPSTRLAASPHCLLPL-APVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMK 104 P + +TR A +P + L + ++GGG LSL ++F K G VV ++ + + A+ FSL+ +VS SRR SYE V++ Sbjct: 445 PGPHATTRTATAPSAIFNLVSTIIGGGILSLPFAFDKCGIVVALVFMVIAASASTFSLYVIVSCSRRGRAASYEEVVR 522
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|1173957313|gb|OQS03871.1| (sodium-coupled neutral amino acid transporter [Thraustotheca clavata]) HSP 1 Score: 55.8398 bits (133), Expect = 9.334e-7 Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 0 Query: 27 FPAHNPSTRLAASPHCLLPLAP-VVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMK 104 +P+ + S R A + ++ L ++GGG L L Y+ A++G V+G ++ L + + F+L+ +VS SRR+G +SYE + K Sbjct: 27 YPSPHSSARQATAKSSVMNLVTTLIGGGVLLLPYTIARSGIVLGCFMMLLCAMGSSFTLYILVSCSRRSGAQSYEEIAK 105 The following BLAST results are available for this feature:
BLAST of EWM27461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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