EWM27461.1, cds3212 (CDS) Nannochloropsis gaditana

Overview
NameEWM27461.1
Unique Namecds3212
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1031175..1031500 +

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Properties
Property NameValue
Protein idEWM27461.1
ProductAmino acid transporter, transmembrane
Partialtrue
Orig transcript idgnl|cribi|Naga_100257g12.9925.mrna
GbkeyCDS
End range.
End range1031500
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1031175..1031500 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Homology
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|585109721|gb|EWM27461.1| (Amino acid transporter, transmembrane, partial [Nannochloropsis gaditana])

HSP 1 Score: 221.861 bits (564), Expect = 2.291e-73
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
Query:    1 MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMKAGTWA 109
            MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMKAGTWA
Sbjct:    1 MRPCTIEGWLKFLYPHLPLYGTDFLPFPAHNPSTRLAASPHCLLPLAPVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMKAGTWA 109          
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|301122403|ref|XP_002908928.1| (sodium-coupled neutral amino acid transporter, putative [Phytophthora infestans T30-4] >gi|262099690|gb|EEY57742.1| sodium-coupled neutral amino acid transporter, putative [Phytophthora infestans T30-4])

HSP 1 Score: 56.6102 bits (135), Expect = 4.414e-7
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   28 PAHNPSTRLAASPHCLLPL-APVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMK 104
            P  + +TR A +P  +  L + ++GGG LSL ++F K G VV ++ + +   A+ FSL+ +VS SRR    SYE V++
Sbjct:  255 PGPHATTRTATAPSAIFNLVSTIIGGGILSLPFAFDKCGLVVALIFMVIAASASTFSLYVIVSCSRRGSAASYEEVVR 332          
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|695427612|ref|XP_009529741.1| (hypothetical protein PHYSODRAFT_509419 [Phytophthora sojae] >gi|348676174|gb|EGZ15992.1| hypothetical protein PHYSODRAFT_509419 [Phytophthora sojae])

HSP 1 Score: 55.8398 bits (133), Expect = 8.030e-7
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   28 PAHNPSTRLAASPHCLLPL-APVVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMK 104
            P  + +TR A +P  +  L + ++GGG LSL ++F K G VV ++ + +   A+ FSL+ +VS SRR    SYE V++
Sbjct:  445 PGPHATTRTATAPSAIFNLVSTIIGGGILSLPFAFDKCGIVVALVFMVIAASASTFSLYVIVSCSRRGRAASYEEVVR 522          
BLAST of EWM27461.1 vs. NCBI_GenBank
Match: gi|1173957313|gb|OQS03871.1| (sodium-coupled neutral amino acid transporter [Thraustotheca clavata])

HSP 1 Score: 55.8398 bits (133), Expect = 9.334e-7
Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 0
Query:   27 FPAHNPSTRLAASPHCLLPLAP-VVGGGTLSLAYSFAKAGSVVGILVLALICVATDFSLFAMVSASRRTGQKSYEGVMK 104
            +P+ + S R A +   ++ L   ++GGG L L Y+ A++G V+G  ++ L  + + F+L+ +VS SRR+G +SYE + K
Sbjct:   27 YPSPHSSARQATAKSSVMNLVTTLIGGGVLLLPYTIARSGIVLGCFMMLLCAMGSSFTLYILVSCSRRSGAQSYEEIAK 105          
The following BLAST results are available for this feature:
BLAST of EWM27461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109721|gb|EWM27461.1|2.291e-73100.00Amino acid transporter, transmembrane, partial [Na... [more]
gi|301122403|ref|XP_002908928.1|4.414e-738.46sodium-coupled neutral amino acid transporter, put... [more]
gi|695427612|ref|XP_009529741.1|8.030e-738.46hypothetical protein PHYSODRAFT_509419 [Phytophtho... [more]
gi|1173957313|gb|OQS03871.1|9.334e-735.44sodium-coupled neutral amino acid transporter [Thr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3220rna3220Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications