rna322, rna322 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna322
Unique Name	rna322
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1947
Alignment location	CM002455.1:796899..799221 -

Link to JBrowse

Properties


Property Name	Value
Product	peroxisomal glycolate oxidase
Orig transcript id	gnl\|cribi\|Naga_100003g174.1723.mrna
Orig protein id	gnl\|cribi\|Naga_100003g174.1723
Gene	GOX
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:796899..799221 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
GOX	gene311	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30206.1	cds322	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna322	rna322-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:796899..799221-
coding sequence from alignment at CM002455.1:796899..799221-

mRNA sequence

>rna322 ID=rna322|Name=rna322|organism=Nannochloropsis gaditana|type=mRNA|length=1947bp
TAAAGGTTCTCACCTATATTATTTCACCATCTCTGCACGCTTAGATTCAT
AACCCGGAATCGCAGGACTTGACGGACGCAGTCTCACGGAGACAAGTGTC
CCTCCTCGTGCCAGGATCACCGACCCTCATCTCCCTCGTTGCCATATCCT
GCCCTCAAATTTACAAAGCTTCGTTATGACAATGGCAGACACGGGGAATG
ACCATGATACAGCCGTTGGCGCCAAATCATCACCGAAACCCTGGTCCAAC
ACTCCGTCCCCGATGTCTTCGTACGTTCGGCCCATGCTCACGGACATGTA
CCAGATAACGATGGTTTTCGCTTACTGGAAGCAAAAAAGACATGAGGACA
GAGCTGTCTTTGAAGTCTTCTTTCGAAAGACTCCGTTTAAAGGCGAGTTC
GCCATCATGGCTGGTCTGGACGAGGTTTTGAAATATCTTGCTAATTTCCG
CTTTTCGAGTGAGGAGCTTGATTATTTGCGGGGGCAAATCCCGCACGCCG
AGGAGGAATTTTTTACGTGGTTAGGCACCGTGGATTGTTCTTGTGTAAAG
GTGTACGCGCTCCAGGATGGAACAACTTGTTTTGGAAAAGAACCATTGGT
CCGCGTGGAGGGATCTCTCGCAGTTGCCCAGCTGCTCGAGACCACTCTCC
TCAACCTACTCAACTACCCTTCCCTCATCGCGACGAATGCTGCCCGCCAC
AGGCTAGCCGTTGGACCTGACAAAGTTCTTTTTGAATTTGGGTTGAGGCG
TGCGCAAGGTCCTGACGGCGCAATGTCGGCGTCCAAGTATTCCTACCTCG
GGGGCTTCGATGGCACCAGCAATGTTCTTGCGGGACATCTGCTGGGCATC
GCCATCAGCGGCACACACGCGCATGCGTACGTCCAGTCCTATGTAGGTTT
AGACAGCCTTCAGACACCCTTTTTGCGGGGGCAAAACCTGGTTGAAAAGG
CGCTGGCCTACCGATCCGCCCTTGGCTACTCCGAGAGCAACGTGGGCGAG
CTGGCAGCTTTTATCGCCTACGCCCAGTCCTGGCCAGATAATTTTCTATG
CCTCGTAGACACGTACGATACTCTTAATTCTGGCGTTCCCAACTTCATGA
GCGTTGCGTTGGCATTGTACGACCTGGGCTACTCGCCACTGGGCATACGG
CTGGACTCGGGAGACCTCGCCTACCTATCTAAACGGATAAGAAAATGGTT
CACTGAGGTGGCCTCAGCATATTCCCGCCCTGCATTACAGATGCTGCGAA
TTGTCGCCTCAAACGACATCAACGAGGACGTGCTATACGCTCTTTCAAAG
CAGGGACACTCCATCGATGCCTTTGGTGTAGGCACGCATCTTGTTACTTG
TCAGGCTCAGCCAGCCCTGGGTTGCGTCTACAAGCTGGTGGAGATCGATG
GGCAGCCTCGGATCAAGTTATCGAATGAGGTGGAGAAGGTGACACTGCCA
AGCCGGAAGCACCTCTATCGTTTCTTCAACGAGAACGGTGTGGCGTTGGT
AGATTTTATGACCAGGGATGGCGAGCCTGCGCCAAAGGAGGGACAGCGTC
TTTTATGTAGGCATCCCTTTGATTCTAAGAAGCGCGCCTACGTGACACCC
ACGACGATAGTCCCTTTGCTGTCCCTCGTGTGGGACGGCCAGAAGGGTGG
CATTCAGCCGGGGGCGTCGCGGACATTGGAAGAGAGCCGCACCCATGTCA
TGGGCCAGCTCAAGGAGATTCGAGAAGATGTGCTCCGACACATCAACCCA
ACCCCATACAAAGTTTCAGTGAGCGAGGAGCTTCATGCCTTGTTACATCA
GCTTTGGGAACTTAACGCTCCGGTCGGTCAATTGTAAATGTGTTCGCTTG
AGAAAAAATTACAAGATGCAGAAATTGAAGTGTGTTACACAGATATTCCA
AGTGTATACGCGGTGGATATAAAAGAAATAACAACAAAATATATCTC

protein sequence of rna322

>rna322-protein ID=rna322-protein|Name=rna322|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MDFVNHPMGAAEETVRTPTGAGPEPVNIREFEAYAKATLPKNAFDYYASG
ANDMITLRENRAAFERLRMRPRILRDVSHVDTRTTVLGDPVAFPICVAPT
AMQRMASPEGELATARACARQQTLMTLSSWSTTSVEDVAAAAPIPKWFQL
YVYKDRELTAELARRAERAGYKALAITVDTPVLGRREADVRNRFKLPAHL
TMANFAGAGGSHAEGTKDGGKDSGLAAYVASLIDRTLQWKDVQWLRSICN
LPIVVKGVMTPEDALVAMQCGVDAIWVSNHGARQLDTVASTIELLPDIVK
AVNGRCEVYLDGGVCRGTDAFKALALGARAVFIGRPVLWGLAHSGEDGVY
QVLELLKKEFEMAMQLTGCTKLSDIQRSMVTHVVSYQSKI

mRNA from alignment at CM002455.1:796899..799221-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna322 ID=rna322|Name=rna322|organism=Nannochloropsis gaditana|type=mRNA|length=2323bp|location=Sequence derived from alignment at CM002455.1:796899..799221- (Nannochloropsis gaditana)
CCGACAAGCCACGTTTGCGTGGAAAGTACACCACTAAGATCTTTGGATGT
CTGCAACGACTATTCCCACTTGTGCGCTTTGAGCGAAATTTCAATATTCC
TCTTGGGCAGCTACATTTCTTTCCGTCTTTGTCAGCGAAGGGGCAGGTTG
GTGCGGTGGTCTGATTTGGATCGGACAGATTGGACACGAGTGTCTGACCA
GACCTCCCCACCCTACGCTCTGACACAAGCCCGTGTCGACCCCTGCAAGG
ACTCTCATGCATGGGGTAAAGGCAAAAAGACTGTGAGCAATTGATGAGGC
ACTGATTCTGGGTCCTCATAAGGAACTTATCTTAGGTGTTATTTTTATCA
AAAGCGAAAAATTCATAAGTAAAATGCACGCAGTAAGTATGTGCTTCGAC
TGAAGGATGCTTGCTCACTTGATGATTCATTTATATATCACAGACAGAAG
TCAATCAAACTTGTCTGTGAACGATGGACTTCGTGAATCATCCAATGGGT
GCAGCGGAAGAGACAGTGAGGACGCCTACCGGGGCAGGGCCCGAGCCTGT
CAACATCAGAGAGTTCGAGGCCTACGCGAAAGCGACCCTCCCCAAAAATG
CTTTCGATTATTATGCTAGCGGAGCCAACGACATGATAACATTACGAGAA
AATCGAGCGGCTTTCGAACGCCTGCGCATGCGGCCCCGCATTCTTCGGGA
TGTAAGTCATGTGGACACCCGGACTACTGTCCTCGGAGACCCCGTGGCAT
TCCCCATCTGTGTTGCACCCACCGCGATGCAGCGGATGGCCAGTCCGGAA
GGAGAGTTGGCTACAGCTCGTGCATGTGCTCGGCAGCAAACACTGATGAC
ATTATCTTCCTGGTCGACGACATCAGTCGAAGACGTGGCAGCGGCCGCCC
CGATTCCTAAATGGTTCCAGCTGTACGTCTATAAAGATAGAGAGCTAACG
GCGGAGCTGGCCAGGCGCGCAGAGCGAGCAGGATACAAGGCGTTGGCAAT
CACTGTGGACACCCCCGTCCTTGGAAGACGGGAAGCAGATGTTCGAAACC
GCTTCAAGTTGCCGGCGCACCTGACCATGGCGAACTTCGCGGGGGCAGGG
GGTTCGCACGCGGAGGGCACCAAAGATGGAGGAAAGGACTCTGGCCTGGC
CGCCTATGTGGCCTCCCTTATCGACCGAACCCTGCAGTGGAAGGATGTGC
AGTGGTTGCGCAGCATTTGCAACCTGCCCATCGTGGTGAAGGGGGTCATG
ACGCCGGAGGACGCGCTCGTGGCCATGCAGTGCGGAGTCGACGCCATCTG
GGTCTCGAACCACGGCGCGCGCCAGCTCGACACGGTGGCCTCCACCATCG
AGCTCCTCCCTGATATCGTGAAGGCCGTCAACGGTCGCTGTGAGGTTTAC
CTCGACGGCGGTGTTTGCCGCGGGACGGACGCTTTCAAGGCACTGGCCCT
GGGGGCCCGCGCCGTCTTCATCGGCCGCCCCGTTCTGTGGGGCTTGGCGC
ACAGCGGGGAGGACGGGGTGTATCAGGTGCTAGAGCTCCTGAAGAAGGAG
TTCGAAATGGCCATGCAGCTGACAGGGTGCACAAAGCTTTCGGATATCCA
GCGGTCTATGGTCACGCATGTAGTCTCGTACCAATCCAAGATCTAGATCG
GGCAGAATGTTCACAGCCAGCGGAGTACGGATAGGAAGGCATGATTACTA
CGTTGGAGGGGTGGTTTGAGACAGAAGACAAGCAGAGATCGAGCGTCGGA
ATTTTCTCGAGTAGCGGGGACGGAAAAGCACATAATGGGGGGTCATCTTG
GCCGCCTGTGGTGAAACGGGGACGAGCCTATTGACGATGTGAATTCTTGC
TCCGATTCATGGACTTGCAAGTCAAAGCCTCACGTCAGTCTCTCGTGCCA
TTTTTAGTCGGGATAATTGGAGACTGTGCGCAACCACGCGTACAAAAGGT
GCAAAGAGCGGTTGTGGAGTAGAACGGGACGTTGAAGAGGGAAAGACAAT
ATTTATGTAAGTTCGACGCCGTATTTGGGAAGGATTCGCCTTCTAAATGC
CAACCACAGAAAAATCTGGTGGCAGATCCAAGCGTAAAGCCTTGGGGGGA
GGGGAGAAACGAGAAAAGATTCCTCAGACAATGGGATGAGAAGAAGGAAA
ATGTGAGCAAGCACACTGGTCCGAAAGAAGTTTTTCGTTGAATCTCACAG
TGCTGTATCAACTGGGTTGTTGAGCCGGTCGTTTTCCAGAGACGAGGCTC
ACGGTCAGTACGCAGAAACTCGAGGATGGCCTAATAGAGCATTTCAGACA
ACTAATTTTGGCCTCCTTTAACG

Coding sequence (CDS) from alignment at CM002455.1:796899..799221-

>rna322 ID=rna322|Name=rna322|organism=Nannochloropsis gaditana|type=CDS|length=1173bp|location=Sequence derived from alignment at CM002455.1:796899..799221- (Nannochloropsis gaditana)
ATGGACTTCGTGAATCATCCAATGGGTGCAGCGGAAGAGACAGTGAGGAC
GCCTACCGGGGCAGGGCCCGAGCCTGTCAACATCAGAGAGTTCGAGGCCT
ACGCGAAAGCGACCCTCCCCAAAAATGCTTTCGATTATTATGCTAGCGGA
GCCAACGACATGATAACATTACGAGAAAATCGAGCGGCTTTCGAACGCCT
GCGCATGCGGCCCCGCATTCTTCGGGATGTAAGTCATGTGGACACCCGGA
CTACTGTCCTCGGAGACCCCGTGGCATTCCCCATCTGTGTTGCACCCACC
GCGATGCAGCGGATGGCCAGTCCGGAAGGAGAGTTGGCTACAGCTCGTGC
ATGTGCTCGGCAGCAAACACTGATGACATTATCTTCCTGGTCGACGACAT
CAGTCGAAGACGTGGCAGCGGCCGCCCCGATTCCTAAATGGTTCCAGCTG
TACGTCTATAAAGATAGAGAGCTAACGGCGGAGCTGGCCAGGCGCGCAGA
GCGAGCAGGATACAAGGCGTTGGCAATCACTGTGGACACCCCCGTCCTTG
GAAGACGGGAAGCAGATGTTCGAAACCGCTTCAAGTTGCCGGCGCACCTG
ACCATGGCGAACTTCGCGGGGGCAGGGGGTTCGCACGCGGAGGGCACCAA
AGATGGAGGAAAGGACTCTGGCCTGGCCGCCTATGTGGCCTCCCTTATCG
ACCGAACCCTGCAGTGGAAGGATGTGCAGTGGTTGCGCAGCATTTGCAAC
CTGCCCATCGTGGTGAAGGGGGTCATGACGCCGGAGGACGCGCTCGTGGC
CATGCAGTGCGGAGTCGACGCCATCTGGGTCTCGAACCACGGCGCGCGCC
AGCTCGACACGGTGGCCTCCACCATCGAGCTCCTCCCTGATATCGTGAAG
GCCGTCAACGGTCGCTGTGAGGTTTACCTCGACGGCGGTGTTTGCCGCGG
GACGGACGCTTTCAAGGCACTGGCCCTGGGGGCCCGCGCCGTCTTCATCG
GCCGCCCCGTTCTGTGGGGCTTGGCGCACAGCGGGGAGGACGGGGTGTAT
CAGGTGCTAGAGCTCCTGAAGAAGGAGTTCGAAATGGCCATGCAGCTGAC
AGGGTGCACAAAGCTTTCGGATATCCAGCGGTCTATGGTCACGCATGTAG
TCTCGTACCAATCCAAGATCTAG

Synonyms

Publications