rna3218, rna3218 (mRNA) Nannochloropsis gaditana

Overview
Namerna3218
Unique Namerna3218
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length261
Alignment locationCM002460.1:1027722..1028855 -

Link to JBrowse

Properties
Property NameValue
Productdual specificity protein phosphatase 12
Orig transcript idgnl|cribi|Naga_100257g9.9929.mrna
Orig protein idgnl|cribi|Naga_100257g9.9929
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1027722..1028855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100257g9gene3096Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3218rna3218-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27465.1cds3210Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3218 ID=rna3218|Name=rna3218|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGCGGACGTGGTGGAAGCCCGAGAGGGCGCTGCACGGGGAGATACTCGA
GCTGTATCTCCATGCCTGCCTGATCCCAAACATCCGTCAGCCGCGTAATC
CCGCGGCTGTTGAAACGGAGAAGGGCATCTCTGTAGAAGACATATGGACA
AGCACAGTATACGAGGAACAAAATTGCAACTGCAGGGCAGGGCAAACATG
TGGGAAGTGCAAGCCCGATGCTTGGAAGGGGAATTTTGCCTTCTGGTCCT
TCATTTCTTAA
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protein sequence of rna3218

>rna3218-protein ID=rna3218-protein|Name=rna3218|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MTERQDSIVDPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRS
VDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSES
IEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEE
TEGLMVVDFGAQVRKNLEVPQQQENCAEKDKTREGSEEATRS
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mRNA from alignment at CM002460.1:1027722..1028855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3218 ID=rna3218|Name=rna3218|organism=Nannochloropsis gaditana|type=mRNA|length=1134bp|location=Sequence derived from alignment at CM002460.1:1027722..1028855- (Nannochloropsis gaditana)
ATTTCCCTGCCTTCATCCCCTACAAGTGGTTCATGACAGAGCGCCAAGAC
TCTATCGTCGATCCAACTAAATCGACTTGCTTCACATGTCGCTTGTGCCG
GTCAGCTCTCTTTAGCGACAAAGATTTGGAGCCCCACGCTACCGGGGCAC
AGCGAATCAATCGTCGCAAAGTGCGTATAACCTCCTACCTTCGCCTCTTT
TCACTGTGCCACGCTTTCCTTTCTTATAAGGCGTTTTACTTGGTTTATGA
AGCAGGTTGGAAGAAGCGTGGATGACTCTGCAGCACACATTCAGGCGTGC
ACGTCCTACTTCTTAAATGAAGCCGCGATGGAATCTTTGGAGTGGGTGCG
CGCGGCCTTACAGGCGCATGACGAGGCAATTGCCTCTAATTCGGCCGTTC
AAACAAGCAGCGAAAGTATCGAGGGAAAGCTTGTATGCCCCAATGCAAGG
TGTGCTGCTCGATTAGGGAGCTTCAATTGGAGCGGTACACAGTGCTCGTG
CGGCTCGTGGGTGGTACCAGCCGTTCAGGTGGTCGGAAGCAAAGTGGATC
GGAAGGGGACTGAAGAAACCGAAGGGTTGATGGTAGTGGATTTCGGTGCA
CAGGTACGTAAAAATCTGGAAGTGCCCCAGCAGCAGGAAAATTGCGCAGA
GAAAGACAAGACAAGAGAAGGAAGCGAAGAAGCGACACGGTCATGACCCA
GCACCAAGAGTTTGGAACCTCGTGCTCAGACACGTCGTGGACAGACCAGC
CGTGATAGTTTGCACACCCTTTTGTACATCCCTTTGATAAGTTTCGATTC
ACATGCTTTTTAAGAAATGAAGGACCAGAAGGCAAAATTCCCCTTCCAAG
CATCGGGCTTGCACTTCCCACATGTTTGCCCTGCCCTGCAGTTGCAATTT
TGTTCCTCGTATACTGTGCTTGTCCATATGTCTTCTACAGAGATGCCCTT
CTCCGTTTCAACAGCCGCGGGATTACGCGGCTGACGGATGTTTGGGATCA
GGCAGGCATGGAGATACAGCTCGAGTATCTCCCCGTGCAGCGCCCTCTAC
TTCATCATCTTTGCCACCTGGACAATCAAATCGCAATCACACGCTTGAAA
CCATGGAAATACATGTTTATTATTTTCTTCATCG
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Coding sequence (CDS) from alignment at CM002460.1:1027722..1028855-

>rna3218 ID=rna3218|Name=rna3218|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002460.1:1027722..1028855- (Nannochloropsis gaditana)
GTTGGAAGAAGCGTGGATGACTCTGCAGCACACATTCAGGCGTGCACGTC
CTACTTCTTAAATGAAGCCGCGATGGAATCTTTGGAGTGGGTGCGCGCGG
CCTTACAGGCGCATGACGAGGCAATTGCCTCTAATTCGGCCGTTCAAACA
AGCAGCGAAAGTATCGAGGGAAAGCTTGTATGCCCCAATGCAAGGTGTGC
TGCTCGATTAGGGAGCTTCAATTGGAGCGGTACACAGTGCTCGTGCGGCT
CGTGGGTGGTACCAGCCGTTCAGGTGGTCGGAAGCAAAGTGGATCGGAAG
GGGACTGAAGAAACCGAAGGGTTGATGGTAGTGGATTTCGGTGCACAGGT
ACGTAAAAATCTGGAAGTGCCCCAGCAGCAGGAAAATTGCGCAGAGAAAG
ACAAGACAAGAGAAGGAAGCGAAGAAGCGACACGGTCATGAATGACAGAG
CGCCAAGACTCTATCGTCGATCCAACTAAATCGACTTGCTTCACATGTCG
CTTGTGCCGGTCAGCTCTCTTTAGCGACAAAGATTTGGAGCCCCACGCTA
CCGGGGCACAGCGAATCAATCGTCGCAAAGTTGGAAGAAGCGTGGATGAC
TCTGCAGCACACATTCAGGCGTGCACGTCCTACTTCTTAAATGAAGCCGC
GATGGAATCTTTGGAGTGGGTGCGCGCGGCCTTACAGGCGCATGACGAGG
CAATTGCCTCTAATTCGGCCGTTCAAACAAGCAGCGAAAGTATCGAGGGA
AAGCTTGTATGCCCCAATGCAAGGTGTGCTGCTCGATTAGGGAGCTTCAA
TTGGAGCGGTACACAGTGCTCGTGCGGCTCGTGGGTGGTACCAGCCGTTC
AGGTGGTCGGAAGCAAAGTGGATCGGAAGGGGACTGAAGAAACCGAAGGG
TTGATGGTAGTGGATTTCGGTGCACAGGTACGTAAAAATCTGGAAGTGCC
CCAGCAGCAGGAAAATTGCGCAGAGAAAGACAAGACAAGAGAAGGAAGCG
AAGAAGCGACACGGTCATGAATGACAGAGCGCCAAGACTCTATCGTCGAT
CCAACTAAATCGACTTGCTTCACATGTCGCTTGTGCCGGTCAGCTCTCTT
TAGCGACAAAGATTTGGAGCCCCACGCTACCGGGGCACAGCGAATCAATC
GTCGCAAA
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Synonyms
Publications