EWM27465.1, cds3210 (CDS) Nannochloropsis gaditana

Overview
NameEWM27465.1
Unique Namecds3210
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1028686..1028823 -
Alignment locationCM002460.1:1028160..1028600 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27465.1
Productdual specificity protein phosphatase 12
Orig transcript idgnl|cribi|Naga_100257g9.9929.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1028686..1028823 -
CM002460.1supercontigCM002460.1:1028160..1028600 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR024950DUSP
Homology
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|585109725|gb|EWM27465.1| (dual specificity protein phosphatase 12 [Nannochloropsis gaditana])

HSP 1 Score: 396.741 bits (1018), Expect = 8.058e-140
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MTERQDSIVDPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVVDFGAQVRKNLEVPQQQENCAEKDKTREGSEEATRS 192
            MTERQDSIVDPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVVDFGAQVRKNLEVPQQQENCAEKDKTREGSEEATRS
Sbjct:    1 MTERQDSIVDPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVVDFGAQVRKNLEVPQQQENCAEKDKTREGSEEATRS 192          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|553186647|ref|XP_005854460.1| (dual specificity protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294600|gb|EKU21900.1| dual specificity protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.324 bits (303), Expect = 5.861e-33
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query:  101 IEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVV 157
            IEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVV
Sbjct:    1 IEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMVV 57          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|1173936257|gb|OQR87240.1| (hypothetical protein ACHHYP_09329 [Achlya hypogyna])

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-26
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 0
Query:   17 FTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRK 146
            + CR+CR  LF+ +DL  H     RI+ RK  +  + +  H   C+SYFL E    +L W+  AL A                  EGKL CP A+C ARLGSF+WSG+QCSCG+WV P++Q+  S+VD K
Sbjct:   15 YMCRMCRVKLFTSEDLLEHDPHQHRISLRKTIKERNPNGLH--ECSSYFLTE----TLPWMDEALLA------------------EGKLHCPVAKCNARLGSFDWSGSQCSCGTWVTPSIQITKSRVDIK 120          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|301112517|ref|XP_002998029.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112323|gb|EEY70375.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 99.7525 bits (247), Expect = 2.128e-23
Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 0
Query:   10 DPTKSTCFTCRLCRSALFSDKDLEPHATGAQRIN-RRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVD 144
            D +  T F C+ CRS LF    L PH     +I+ RRK+       +AH+ AC+SYFL E    +L W+  AL A                  EGK+ CP  +C +RLG+  WSG+QCSCG+WV P++++  S+VD
Sbjct:   10 DESSVTKFACKKCRSVLFKSDQLTPHEPEQHQISTRRKLKDLKHQVSAHV-ACSSYFLEE----TLPWMDEALLA------------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 122          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|1173949337|gb|OQR97387.1| (hypothetical protein THRCLA_21939 [Thraustotheca clavata])

HSP 1 Score: 98.2117 bits (243), Expect = 5.954e-23
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 0
Query:   17 FTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRK 146
            F CR+CR  LF+  DL  H     RI  RK  +  + +   +  C+SYFL++      EW+   L A                  EGKL CP  +C ARLGSF WSG+QCSCG+WV P++Q+  S+VD K
Sbjct:    5 FVCRMCRVPLFTSVDLMEHEPHQHRIALRK--KMKEGNINGVVECSSYFLSDTK----EWMDENLLA------------------EGKLHCPKQKCNARLGSFEWSGSQCSCGTWVTPSIQITKSRVDIK 110          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|698803534|ref|XP_009834796.1| (hypothetical protein H257_10057 [Aphanomyces astaci] >gi|574110165|gb|ETV75665.1| hypothetical protein H257_10057 [Aphanomyces astaci])

HSP 1 Score: 98.2117 bits (243), Expect = 1.286e-22
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = 0
Query:   17 FTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVDRKGTEETEGLMV 156
            F CR+CR  LF+  DL  H     +I++RK    + +S      C+S+FL    +++ EW+       DEA  +           EGKL+CP A+C ARLGSF WSG+QCSCG+WV P+VQ   S+VD K     + + V
Sbjct:   11 FVCRMCRVLLFTSDDLLQHEPQKHQISQRK---KLKESKLGAVDCSSFFL----VDTKEWM-------DEASLA-----------EGKLLCPVAKCNARLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVKLKMNIQAVYV 125          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|568029631|gb|ETM03552.1| (hypothetical protein L917_00244 [Phytophthora parasitica])

HSP 1 Score: 97.8265 bits (242), Expect = 1.956e-22
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   10 DPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVD 144
            D +  T F C+ CR  LF+ + L PH     +I+ R+  + +  S     AC+SYFL E    +L W+  AL A                  EGK+ CP  +C +RLG+  WSG+QCSCG+WV P++++  S+VD
Sbjct:   24 DASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGANVACSSYFLEE----TLSWMDEALLA------------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|570338179|gb|ETO86127.1| (hypothetical protein F444_00282 [Phytophthora parasitica P1976])

HSP 1 Score: 97.8265 bits (242), Expect = 1.977e-22
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   10 DPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVD 144
            D +  T F C+ CR  LF+ + L PH     +I+ R+  + +  S     AC+SYFL E    +L W+  AL A                  EGK+ CP  +C +RLG+  WSG+QCSCG+WV P++++  S+VD
Sbjct:   24 DASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGANVACSSYFLEE----TLSWMDEALLA------------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|568060285|gb|ETM56824.1| (hypothetical protein L914_00266, partial [Phytophthora parasitica])

HSP 1 Score: 97.4413 bits (241), Expect = 2.035e-22
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   10 DPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVD 144
            D +  T F C+ CR  LF+ + L PH     +I+ R+  + +  S     AC+SYFL E    +L W+  AL A                  EGK+ CP  +C +RLG+  WSG+QCSCG+WV P++++  S+VD
Sbjct:   16 DASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGANVACSSYFLEE----TLSWMDEALLA------------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 128          
BLAST of EWM27465.1 vs. NCBI_GenBank
Match: gi|567972170|gb|ETK97160.1| (hypothetical protein L915_00260 [Phytophthora parasitica])

HSP 1 Score: 97.8265 bits (242), Expect = 2.063e-22
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   10 DPTKSTCFTCRLCRSALFSDKDLEPHATGAQRINRRKVGRSVDDSAAHIQACTSYFLNEAAMESLEWVRAALQAHDEAIASNSAVQTSSESIEGKLVCPNARCAARLGSFNWSGTQCSCGSWVVPAVQVVGSKVD 144
            D +  T F C+ CR  LF+ + L PH     +I+ R+  + +  S     AC+SYFL E    +L W+  AL A                  EGK+ CP  +C +RLG+  WSG+QCSCG+WV P++++  S+VD
Sbjct:   24 DASSVTKFACKKCRCVLFTSEQLMPHEPEQHQISARRKLKDLKHSVGANVACSSYFLEE----TLSWMDEALLA------------------EGKIHCPTLKCQSRLGALQWSGSQCSCGTWVTPSIKITKSRVD 136          
The following BLAST results are available for this feature:
BLAST of EWM27465.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109725|gb|EWM27465.1|8.058e-140100.00dual specificity protein phosphatase 12 [Nannochlo... [more]
gi|553186647|ref|XP_005854460.1|5.861e-33100.00dual specificity protein, partial [Nannochloropsis... [more]
gi|1173936257|gb|OQR87240.1|2.931e-2642.31hypothetical protein ACHHYP_09329 [Achlya hypogyna... [more]
gi|301112517|ref|XP_002998029.1|2.128e-2338.97conserved hypothetical protein [Phytophthora infes... [more]
gi|1173949337|gb|OQR97387.1|5.954e-2340.00hypothetical protein THRCLA_21939 [Thraustotheca c... [more]
gi|698803534|ref|XP_009834796.1|1.286e-2239.29hypothetical protein H257_10057 [Aphanomyces astac... [more]
gi|568029631|gb|ETM03552.1|1.956e-2236.30hypothetical protein L917_00244 [Phytophthora para... [more]
gi|570338179|gb|ETO86127.1|1.977e-2236.30hypothetical protein F444_00282 [Phytophthora para... [more]
gi|568060285|gb|ETM56824.1|2.035e-2236.30hypothetical protein L914_00266, partial [Phytopht... [more]
gi|567972170|gb|ETK97160.1|2.063e-2236.30hypothetical protein L915_00260 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3218rna3218Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications