rna3207, rna3207 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3207
Unique Name	rna3207
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1434
Alignment location	CM002460.1:999333..1001928 +

Link to JBrowse

Properties


Property Name	Value
Product	protein phosphatase 2c ptc1
Orig transcript id	gnl\|cribi\|Naga_100174g11.7292.mrna
Orig protein id	gnl\|cribi\|Naga_100174g11.7292
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:999333..1001928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100174g11	gene3085	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3207	rna3207-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27477.1	cds3199	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:999333..1001928+
coding sequence from alignment at CM002460.1:999333..1001928+

mRNA sequence

>rna3207 ID=rna3207|Name=rna3207|organism=Nannochloropsis gaditana|type=mRNA|length=1434bp
TGGTCTATCGGTGTGTGCATATCAAAGTTTTAATCCATTAAAAAATAAGT
GTGAGTCCATGTTCCGTTCGCAAAGAGCACTCGCTGAACACTCATCAAGA
TGCACGTAGTCAAGACGCGCCAGGTAATTGAAGGGAATAAAGCATGTGCT
TTCTTCCGCCCAGGAGGAAATGCCATACCATTGTGCCCAGGTAGTATAAG
TCCTGTCCATGCGCAGGCTACTGCTTGAGAAGGGACTCCTTACCTTCACG
ACGACCCACACGGTCTCACTAGCATCTCTCCCGCTTGCCCTCCACTTTGC
GTCCCCATGTTGCTAAACATATTGGCTATTCGACAGAGCATGTACAATTC
TGGCAACAGCGCCACCATGCCTCCGGCATACCAGCAGGAGATACGTAGGG
TGGATCCTACCGCGGACTTACCCATGATCGTGGCACGGGGAGCTGTCCGG
CTGGCGAAGAAACACTATGTTATTTCATCCATGTGGGTGGCGGGTCTCAT
CATTTTGACCTTTTTTCGAGGCCTGACTGTCCCGGATGAAAACTTGACGA
AATACAATCAAGCTGTCAAGTCGATCGACTTCAATAAGCTCTACAGGCTT
CAAAATGATGCATGGGTAGCGGAGGAGCAGTTTCGTCATAGCAAAGGCTG
GTTTTCTTGCGATCATGTGTGCCAGGCCAATAAGGAGGTGTGGAACAGGG
CCCTGGCCAAGCTGCAGAAGCTGGAAAGGGAGCAAGAAAAGAAGCAACGC
GAGGCCAACAAGCACCTTGGTCTTTTCTCTACATACGGCGTGGAAGAATG
CAAACAGCTCTTCTGGAAATCATTTAAATGGGGCAAGAATTTTGGCCAGC
GTCAGACCATGTTTGATATGCTTTTTATGGGCTTTCGCGCCATGGGTCGT
GACGAGGGTTTGCTGGAGTACATTTTGCAGATATTGATGCACTTCCTGCT
GAACATGGCCATGGGTCTCTTCGTCGCCTTGACCGGCTTCACTTTTTCCC
TCTGGTCCTTCATCCGTGCTTATTCTCCGGACCTTGTGACCGGCCTTTTC
TTTTTCGCGGGGGCTGTCATTAGCGCCACTGCAATGGTAGCTACCTATCT
CACCCTGTTGTATGGAACGGCGGGTGCGACCGTTTATGTGGGTGTCAAGG
CCCTCTTAAACAACGCCAACCGTCTCGAGCAGGGCGGGGATGCGAGGAGG
CCACGGCGGAATTTGCATTATGAGTAAGGAATATGCCACGTCGGATGCAA
GAATTTGGTAGAATTTACGTTGATGATGGAAGGCTTGTTAATAACATACC
GTCTAACACCTTTTCTCAGACGTTGTTTTCCCGCACTGAGTTTCTCTACA
TTTGTGCTGCTTTCAAATGTGCGACCAAACCAAGTTCATGCTTGACATTT
ATCTTGTCATACATCTACTTCTGCGCAGCAAATC

protein sequence of rna3207

>rna3207-protein ID=rna3207-protein|Name=rna3207|organism=Nannochloropsis gaditana|type=polypeptide|length=524bp
MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLR
PRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAK
ISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCS
KGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARP
SHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHP
IQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAAR
RVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVG
GTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAF
LILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAA
AALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKF
ISKLRGISNRNLDSGGTGEIDTRC

mRNA from alignment at CM002460.1:999333..1001928+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3207 ID=rna3207|Name=rna3207|organism=Nannochloropsis gaditana|type=mRNA|length=2596bp|location=Sequence derived from alignment at CM002460.1:999333..1001928+ (Nannochloropsis gaditana)
ATGTATGGCTCCAAAATGTCAGATAGTACATTCaacgcgtcctcctctgt
gcAGATGCCTCCCTCTGGAACCCATACCGAGTGGACTGCCGATAAGTGTT
ATCAGGACACCATGGACATACCCACCGTTTTACCTATGGCACATCTTAGA
CCACGAGTCTCAAAAACAGCCGCAATCACCGCAGAAatggcacctcctcc
tgtggCGCCTAGTCTCGCACCAAGGCGAACGTCCCCATTACTTATCAGCG
CGTATGCCCGTATGCGCAAAAGCGTGAGTGAAGGATGCATGGCGGCAAAG
ATAAGCGGCCCTTCTTCTCACATCACGCATGACATCCGTCGCCGCATTCG
GCACCAGCAGCACCATCCTTATCCTTCGTCCCCACCTCCTACTTCTTGTG
GGATCGAGAAAGGGGACAGGCCGATACTGGAAGCGGGGAGGCCGTGCTCC
AAGGGGCCCTGCGAATCCATGAAAGACCAGCGTCACGCGAACCACATGTA
CACATACGGTTCCAGCTTGTCAATTCTTGGGGCCACATCCACAGGACTGC
CCGCGTCGCTGAGCCTGGGCGTCAGGCACGACGCaggaggggcgcggcca
AGCCACGAAGGCATCCCCAGGAGTCCGAAGCGGCCTGCCTCGACAGAGAG
ACAACACGCCGAAGCAAGCCACGCCGAAGAAGGGTCCTCACAAATGAACG
AGACTACGCATATGCAAGACGACGGGGCTGCCTCAACCCTAAGTCACCCG
ATTCAACCGGCAGcgcacggagggggagatatGTGCCCCTCCGACCACga
caggcagggaggggcaatcGATGTCCGAGGAACATGCACGCACACGGCAG
CCCATCTATTCGCGGCGGCTTCCAAGTTTGCtgccgccaaggcggcccGA
CGGGTGCTTTCTACGGGGGACGTAAGGTGGGGAGGCTTTTCCTTCacgat
ccccccccgcccagcgCCCGCCCAAGCAGAGATGTCCGCCTCTCAAAGCG
GACAGGCCAGTGGAGCTTGCACACTTCCAGGCTTAAAGCCCAACCATCCG
AACTGGCAGAACCAGGACAGTTTTTTCCTGCTGGAagtggggcaggaggc
gtcccggcgggaggcaggggcggaagTCCCTGCCTGTCCTGTGAAGCCCG
CCTCGGTCGCCTCCCTGTACGCCGTCCTCGACGGCCACGGCGAGCAAGGA
CACCTAGTCAGTCAATTTGTGCGGCACCATCTTCCCAGTCACCTCCGAAA
CACGGGCTACGATGTCCTTgaggccttttccatcatgcAACAAGAACTGG
CTAGCTGCCCTTCCCTGAAAGTCGCCTGCTCGGGCTGCACCTGTGTGTTG
GTGCTGGCGCGCGTgaccggggaaggagaaggggaggagggaatgcggCT
GACCGTGGCGAATCTTGGAGATTCACGTTGTGTGCTGGGACGGCGGAGAC
GGTCCCGACCGGGTACAGGCCCCGGGAGGAGTGACgctggacaaggggaa
gagagtgTCTTGGATGTCGGTGCGCACCTTCTAGGAAAGCCTTTGGatag
ccccctcccccagcacaCTCCCCATTCCCAGCCCGAcggcaggaggagcg
gcgggtCCAGGAGAAGGGCCTGTCCACACGTGCGTGCCGTGCCCCTCACC
CAGGACCATAAGCCCGACCGCCCCGACGAATTCCGACGCATTCTCGCCGC
GGGAGGGCAGGTCGGGTATCGGCAATACacctctccccatccctccccgg
gcccctcccaccaccgtCACGCCAGCGATCCCAAGCTCCTGCCCCCTGTG
ACGCTCGGCCCTGCCCGGCTCTGGTATCAATACCGGGGAGATCGAAACGG
TCTCGCCATGAGTAGGTCCTTCGGGGACACGGCGGTGCACGCGGTGGGAG
GAACGAGTCAACCCGAGGTGATGGAGTATCTCgtgaagggcgggcggagc
gagggagggaaaacatgtatcgggagggaggaggaggagggaggggaggg
cgtgatgcatgagaaagggatggaggtcgaggacgaggaggacgcattCC
TGATTCTTGCGAGCGATGGTCTGTGGGACGTTGTAGATAAccaagaggcg
gtggagattGTAGATAGGTATGCTCGAGCCTCCTTTcgagcgggggagag
gagggagggaggaggaaaggttgGAGGATGGCAGCCCAGgaaggcagcag
cagccttgGTCAGCTTCGCCAGAAGCCGTTGGGAATATTTGTCGCCGCTG
TCCATCGATGACATTACTTGTGTGGTCGTGAGACTGCCATCCCCCAGAGA
AAGAAGGTGAAGAGTGGTGAAACCGAGGAAAGGGGTATTGAAGAGATCGG
CTGTAATGAGTACCTGCCCGGGTCAGAGGCCGGTGGATCCATCTTCCATT
GAGGCGTTGGTGGgtaggagagaagaaaaaaggggaatTGGAATGCTCCG
CCTTTTGACACATAATACCTGTGGATAGAAGGATGAAAGTCCACTCGGGA
GATCCTACTTGTTTGAAATTCATCAGTAAACTGAGAGGTATTTCTAATAG
AAACCTCGATAGCGGCGGTACAGGAGAAATTGACACAAGGTGCTAG

Coding sequence (CDS) from alignment at CM002460.1:999333..1001928+

>rna3207 ID=rna3207|Name=rna3207|organism=Nannochloropsis gaditana|type=CDS|length=4725bp|location=Sequence derived from alignment at CM002460.1:999333..1001928+ (Nannochloropsis gaditana)
ATGTATGGCTCCAAAATGTCAGATAGTACATTCaacgcgtcctcctctgt
gcAGATGCCTCCCTCTGGAACCCATACCGAGTGGACTGCCGATAAGTGTT
ATCAGGACACCATGGACATACCCACCGTTTTACCTATGGCACATCTTAGA
CCACGAGTCTCAAAAACAGCCGCAATCACCGCAGAAatggcacctcctcc
tgtggCGCCTAGTCTCGCACCAAGGCGAACGTCCCCATTACTTATCAGCG
CGTATGCCCGTATGCGCAAAAGCGTGAGTGAAGGATGCATGGCGGCAAAG
ATAAGCGGCCCTTCTTCTCACATCACGCATGACATCCGTCGCCGCATTCG
GCACCAGCAGCACCATCCTTATCCTTCGTCCCCACCTCCTACTTCTTGTG
GGATCGAGAAAGGGGACAGGCCGATACTGGAAGCGGGGAGGCCGTGCTCC
AAGGGGCCCTGCGAATCCATGAAAGACCAGCGTCACGCGAACCACATGTA
CACATACGGTTCCAGCTTGTCAATTCTTGGGGCCACATCCACAGGACTGC
CCGCGTCGCTGAGCCTGGGCGTCAGGCACGACGCaggaggggcgcggcca
AGCCACGAAGGCATCCCCAGGAGTCCGAAGCGGCCTGCCTCGACAGAGAG
ACAACACGCCGAAGCAAGCCACGCCGAAGAAGGGTCCTCACAAATGAACG
AGACTACGCATATGCAAGACGACGGGGCTGCCTCAACCCTAAGTCACCCG
ATTCAACCGGCAGcgcacggagggggagatatGTGCCCCTCCGACCACga
caggcagggaggggcaatcGATGTCCGAGGAACATGCACGCACACGGCAG
CCCATCTATTCGCGGCGGCTTCCAAGTTTGCtgccgccaaggcggcccGA
CGGGTGCTTTCTACGGGGGACGTAAGCGATCCCAAGCTCCTGCCCCCTGT
GACGCTCGGCCCTGCCCGGCTCTGGTATCAATACCGGGGAGATCGAAACG
GTCTCGCCATGAGTAGGTCCTTCGGGGACACGGCGGTGCACGCGGTGGGA
GGAACGAGTCAACCCGAGGTGATGGAGTATCTCgtgaagggcgggcggag
cgagggagggaaaacatgtatcgggagggaggaggaggagggaggggagg
gcgtgatgcatgagaaagggatggaggtcgaggacgaggaggacgcattC
CTGATTCTTGCGAGCGATGGTCTGTGGGACGTTGTAGATAAccaagaggc
ggtggagattGTAGATAGGTATGCTCGAGCCTCCTTTcgagcgggggaga
ggagggagggaggaggaaaggttgGAGGATGGCAGCCCAGgaaggcagca
gcagccttgGTCAGCTTCGCCAGAAGCCGTTGGGAATATTTGTCGCCGCT
GTCCATCGATGACATTACTTGTGTGGTCGTGAGACTGCCATCCCCCAGAG
AAAGAAGAAGGATGAAAGTCCACTCGGGAGATCCTACTTGTTTGAAATTC
ATCAGTAAACTGAGAGGTATTTCTAATAGAAACCTCGATAGCGGCGGTAC
AGGAGAAATTGACACAAGGTGCTAGATGTATGGCTCCAAAATGTCAGATA
GTACATTCaacgcgtcctcctctgtgcAGATGCCTCCCTCTGGAACCCAT
ACCGAGTGGACTGCCGATAAGTGTTATCAGGACACCATGGACATACCCAC
CGTTTTACCTATGGCACATCTTAGACCACGAGTCTCAAAAACAGCCGCAA
TCACCGCAGAAatggcacctcctcctgtggCGCCTAGTCTCGCACCAAGG
CGAACGTCCCCATTACTTATCAGCGCGTATGCCCGTATGCGCAAAAGCGT
GAGTGAAGGATGCATGGCGGCAAAGATAAGCGGCCCTTCTTCTCACATCA
CGCATGACATCCGTCGCCGCATTCGGCACCAGCAGCACCATCCTTATCCT
TCGTCCCCACCTCCTACTTCTTGTGGGATCGAGAAAGGGGACAGGCCGAT
ACTGGAAGCGGGGAGGCCGTGCTCCAAGGGGCCCTGCGAATCCATGAAAG
ACCAGCGTCACGCGAACCACATGTACACATACGGTTCCAGCTTGTCAATT
CTTGGGGCCACATCCACAGGACTGCCCGCGTCGCTGAGCCTGGGCGTCAG
GCACGACGCaggaggggcgcggccaAGCCACGAAGGCATCCCCAGGAGTC
CGAAGCGGCCTGCCTCGACAGAGAGACAACACGCCGAAGCAAGCCACGCC
GAAGAAGGGTCCTCACAAATGAACGAGACTACGCATATGCAAGACGACGG
GGCTGCCTCAACCCTAAGTCACCCGATTCAACCGGCAGcgcacggagggg
gagatatGTGCCCCTCCGACCACgacaggcagggaggggcaatcGATGTC
CGAGGAACATGCACGCACACGGCAGCCCATCTATTCGCGGCGGCTTCCAA
GTTTGCtgccgccaaggcggcccGACGGGTGCTTTCTACGGGGGACGTAA
GCGATCCCAAGCTCCTGCCCCCTGTGACGCTCGGCCCTGCCCGGCTCTGG
TATCAATACCGGGGAGATCGAAACGGTCTCGCCATGAGTAGGTCCTTCGG
GGACACGGCGGTGCACGCGGTGGGAGGAACGAGTCAACCCGAGGTGATGG
AGTATCTCgtgaagggcgggcggagcgagggagggaaaacatgtatcggg
agggaggaggaggagggaggggagggcgtgatgcatgagaaagggatgga
ggtcgaggacgaggaggacgcattCCTGATTCTTGCGAGCGATGGTCTGT
GGGACGTTGTAGATAAccaagaggcggtggagattGTAGATAGGTATGCT
CGAGCCTCCTTTcgagcgggggagaggagggagggaggaggaaaggttgG
AGGATGGCAGCCCAGgaaggcagcagcagccttgGTCAGCTTCGCCAGAA
GCCGTTGGGAATATTTGTCGCCGCTGTCCATCGATGACATTACTTGTGTG
GTCGTGAGACTGCCATCCCCCAGAGAAAGAAGAAGGATGAAAGTCCACTC
GGGAGATCCTACTTGTTTGAAATTCATCAGTAAACTGAGAGGTATTTCTA
ATAGAAACCTCGATAGCGGCGGTACAGGAGAAATTGACACAAGGTGCTAG
ATGTATGGCTCCAAAATGTCAGATAGTACATTCaacgcgtcctcctctgt
gcAGATGCCTCCCTCTGGAACCCATACCGAGTGGACTGCCGATAAGTGTT
ATCAGGACACCATGGACATACCCACCGTTTTACCTATGGCACATCTTAGA
CCACGAGTCTCAAAAACAGCCGCAATCACCGCAGAAatggcacctcctcc
tgtggCGCCTAGTCTCGCACCAAGGCGAACGTCCCCATTACTTATCAGCG
CGTATGCCCGTATGCGCAAAAGCGTGAGTGAAGGATGCATGGCGGCAAAG
ATAAGCGGCCCTTCTTCTCACATCACGCATGACATCCGTCGCCGCATTCG
GCACCAGCAGCACCATCCTTATCCTTCGTCCCCACCTCCTACTTCTTGTG
GGATCGAGAAAGGGGACAGGCCGATACTGGAAGCGGGGAGGCCGTGCTCC
AAGGGGCCCTGCGAATCCATGAAAGACCAGCGTCACGCGAACCACATGTA
CACATACGGTTCCAGCTTGTCAATTCTTGGGGCCACATCCACAGGACTGC
CCGCGTCGCTGAGCCTGGGCGTCAGGCACGACGCaggaggggcgcggcca
AGCCACGAAGGCATCCCCAGGAGTCCGAAGCGGCCTGCCTCGACAGAGAG
ACAACACGCCGAAGCAAGCCACGCCGAAGAAGGGTCCTCACAAATGAACG
AGACTACGCATATGCAAGACGACGGGGCTGCCTCAACCCTAAGTCACCCG
ATTCAACCGGCAGcgcacggagggggagatatGTGCCCCTCCGACCACga
caggcagggaggggcaatcGATGTCCGAGGAACATGCACGCACACGGCAG
CCCATCTATTCGCGGCGGCTTCCAAGTTTGCtgccgccaaggcggcccGA
CGGGTGCTTTCTACGGGGGACGTAAGCGATCCCAAGCTCCTGCCCCCTGT
GACGCTCGGCCCTGCCCGGCTCTGGTATCAATACCGGGGAGATCGAAACG
GTCTCGCCATGAGTAGGTCCTTCGGGGACACGGCGGTGCACGCGGTGGGA
GGAACGAGTCAACCCGAGGTGATGGAGTATCTCgtgaagggcgggcggag
cgagggagggaaaacatgtatcgggagggaggaggaggagggaggggagg
gcgtgatgcatgagaaagggatggaggtcgaggacgaggaggacgcattC
CTGATTCTTGCGAGCGATGGTCTGTGGGACGTTGTAGATAAccaagaggc
ggtggagattGTAGATAGGTATGCTCGAGCCTCCTTTcgagcgggggaga
ggagggagggaggaggaaaggttgGAGGATGGCAGCCCAGgaaggcagca
gcagccttgGTCAGCTTCGCCAGAAGCCGTTGGGAATATTTGTCGCCGCT
GTCCATCGATGACATTACTTGTGTGGTCGTGAGACTGCCATCCCCCAGAG
AAAGAAGAAGGATGAAAGTCCACTCGGGAGATCCTACTTGTTTGAAATTC
ATCAGTAAACTGAGAGGTATTTCTAATAGAAACCTCGATAGCGGCGGTAC
AGGAGAAATTGACACAAGGTGCTAG

Synonyms

Publications