EWM27477.1, cds3199 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|585109738|gb|EWM27477.1| (protein phosphatase 2c ptc1 [Nannochloropsis gaditana]) HSP 1 Score: 1075.46 bits (2780), Expect = 0.000e+0 Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 0
Query: 1 MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLRPRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAKISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCSKGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARPSHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHPIQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKFISKLRGISNRNLDSGGTGEIDTRC 524
MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLRPRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAKISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCSKGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARPSHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHPIQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKFISKLRGISNRNLDSGGTGEIDTRC
Sbjct: 1 MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLRPRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAKISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCSKGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARPSHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHPIQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKFISKLRGISNRNLDSGGTGEIDTRC 524
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|299472680|emb|CBN78332.1| (Protein phosphatase 2C containing protein [Ectocarpus siliculosus]) HSP 1 Score: 102.064 bits (253), Expect = 1.388e-20 Identity = 65/166 (39.16%), Postives = 84/166 (50.60%), Query Frame = 0
Query: 317 VTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSP 482
+ +GPAR+WY+ RG+ GLAMSRS GD H G +S+PEV E+ + D D FLILA+DG+WDV + +AV+IV YA R G W P+ AA+ L AR RWE LS + +DDIT +VVRL P
Sbjct: 161 IPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVKEHQI--------------------------------DANDQFLILATDGVWDVTEIGQAVQIVQGYA-------SRCRG----NSWDPQGAASLLAHSARKRWEGLSAV-VDDITALVVRLTVP 282
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|676395601|ref|XP_009041078.1| (hypothetical protein AURANDRAFT_67405 [Aureococcus anophagefferens] >gi|323448327|gb|EGB04227.1| hypothetical protein AURANDRAFT_67405 [Aureococcus anophagefferens]) HSP 1 Score: 85.5001 bits (210), Expect = 5.257e-16 Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 0
Query: 334 GLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLIL------ASDGLWDVVDNQEAVEIV-----DRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRR 487
GLAMSRSFGD+ VH +G + +PE+ ++ + DE DAFLI A+DG+WDV+DN +A +IV RYAR + + + G W P +AA L AR RWE LSP+ IDDIT +VV L R R
Sbjct: 28 GLAMSRSFGDSIVHGLGVSCEPEITDHRI--------------------------------DESDAFLIWLESIYSATDGVWDVIDNNQAAQIVHSHLTSRYARP--LSQPQHTTDCRSGEWDPSEAAHMLCMSARRRWESLSPM-IDDITALVVDLHKLTGRLR 157
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|298709346|emb|CBJ31281.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.781 bits (164), Expect = 1.048e-8 Identity = 56/174 (32.18%), Postives = 77/174 (44.25%), Query Frame = 0
Query: 320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEV------EDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRR 487
GP R+W + D GLAMSR+ GDT H VG TS P+ C ++E G +G ++ G + A LILA+DGLW+ + +QEAV+I A+ S +PR+A AL A +RW + +DDIT V RE
Sbjct: 185 GPPRVWLADK-DTPGLAMSRTLGDTVAHTVGVTSDPDTYR-------------CDLHDQETGVQGRVNNGGGGGGGGDGKDQAAAAVLILATDGLWEFISDQEAVDIA---AQCS----------------EPRQAVLALTHEATNRWMKEEQV-VDDITVCVAFFKGWREEEE 324
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|545707114|ref|XP_005705872.1| (protein phosphatase 2C isoform 1 [Galdieria sulphuraria] >gi|452822332|gb|EME29352.1| protein phosphatase 2C isoform 1 [Galdieria sulphuraria]) HSP 1 Score: 68.1662 bits (165), Expect = 1.628e-8 Identity = 49/161 (30.43%), Postives = 72/161 (44.72%), Query Frame = 0
Query: 319 LGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRL 479
+GP R+W GLAM+RSFGD+ +H+VG + PEV TCI E D F +LASDG+W+ + +QE V+ + +Y R ++AA +LV A RW + L +DD+T +V+ L
Sbjct: 365 IGPLRVWLADEW-IPGLAMTRSFGDSLLHSVGVSEIPEV--------------TCIQLS------------------EMDKFCVLASDGVWEFMSSQEVVDFLGKYRRKC----------------SAQEAAESLVQEAVKRWRK-NELVVDDVTAIVIWL 475
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|922868756|gb|KOO35057.1| (hypothetical protein Ctob_007757 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 67.3958 bits (163), Expect = 3.301e-8 Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 0
Query: 321 PARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGRE-EEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLP 480
PAR+W R GLAMSRS GD V VG + P+V ++ ++ + R E +GG+G D F+I+ASDG+W+ ++ EA IV++Y A+ +A + LV A +RW+ DDIT ++ LP
Sbjct: 275 PARVWAH---GRIGLAMSRSIGDGEVKNVGVIADPDVTHVVLS---ADDVMHAVRRPPEVKGGDG-------------DLFIIVASDGVWEFTESDEACRIVEKYTSAT-------------------EACSQLVHEAAARWKRFEGTYRDDITAIITFLP 397
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|926777186|ref|XP_013897067.1| (Protein phosphatase 2C containing protein [Monoraphidium neglectum] >gi|761966272|gb|KIY98047.1| Protein phosphatase 2C containing protein [Monoraphidium neglectum]) HSP 1 Score: 65.855 bits (159), Expect = 7.573e-8 Identity = 53/183 (28.96%), Postives = 78/183 (42.62%), Query Frame = 0
Query: 299 ARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRN--GLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRL 479
A RVL++G + LGP R+W + D N GL M+RSFGD VG P+V+ Y +K G C ++++L SDG+++ +D+QE V +V A+ G P +AA LV AR RW+ IDD T +V+ +
Sbjct: 166 ADRVLASGGRIASYMFNDEPLGPPRVWLR---DLNVPGLCMTRSFGDAVAATVGVIDSPDVVTYPLKPEDRRAGLLC-------------------------SYVVLMSDGIFEFMDSQEVVAMVHTLAQQ---------------GHGPNEAAKQLVREARRRWQQEEQDIIDDCTAMVLHI 305
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|567997114|gb|ETL47204.1| (hypothetical protein L916_03040 [Phytophthora parasitica]) HSP 1 Score: 63.5438 bits (153), Expect = 4.392e-7 Identity = 53/158 (33.54%), Postives = 69/158 (43.67%), Query Frame = 0
Query: 320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVV 477
G R+W Q D GLAMSRSFGD+ VG T++P+V E+ V + G E AF ILASDG+W+ + E ++ V S G P++A ALV AR RW+ + IDDIT VV
Sbjct: 306 GSYRVWLQ-DVDMPGLAMSRSFGDSVAKTVGVTAEPDVTTV-----------------EKLKFSSVDKKNG-----EPSAFAILASDGIWEFMTTDECIDFVAACIVDS--------------GMAPQEACTALVEEARDRWDAEEDV-IDDITAAVV 425
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|570958779|gb|ETP23758.1| (hypothetical protein F441_03171 [Phytophthora parasitica CJ01A1] >gi|570994671|gb|ETP51745.1| hypothetical protein F442_03173 [Phytophthora parasitica P10297]) HSP 1 Score: 62.7734 bits (151), Expect = 7.418e-7 Identity = 52/158 (32.91%), Postives = 70/158 (44.30%), Query Frame = 0
Query: 320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVV 477
G R+W Q D GLAMSRSFGD+ VG T++P+V + K +++ GE AF ILASDG+W+ + E ++ V S G P++A ALV AR RW+ + IDDIT VV
Sbjct: 306 GSYRVWLQ-DVDMPGLAMSRSFGDSVAKTVGVTAEPDV---------TTVEKLKFSSVDKKNGE------------RPSAFAILASDGIWEFMTTDECIDFVAACIVDS--------------GMAPQEACTALVEEARDRWDAEEDV-IDDITAAVV 426
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|675182999|ref|XP_008900384.1| (hypothetical protein PPTG_07771 [Phytophthora parasitica INRA-310] >gi|566031039|gb|ETI53950.1| hypothetical protein F443_03191 [Phytophthora parasitica P1569] >gi|567968684|gb|ETK93810.1| hypothetical protein L915_03070 [Phytophthora parasitica] >gi|568026310|gb|ETM00303.1| hypothetical protein L917_02969 [Phytophthora parasitica] >gi|568056776|gb|ETM53482.1| hypothetical protein L914_03038 [Phytophthora parasitica] >gi|568099391|gb|ETN14105.1| hypothetical protein PPTG_07771 [Phytophthora parasitica INRA-310] >gi|570334685|gb|ETO82633.1| hypothetical protein F444_03258 [Phytophthora parasitica P1976] >gi|970656426|gb|KUF94438.1| protein phosphatase 2C 48 [Phytophthora nicotianae]) HSP 1 Score: 62.7734 bits (151), Expect = 7.753e-7 Identity = 52/158 (32.91%), Postives = 70/158 (44.30%), Query Frame = 0
Query: 320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVV 477
G R+W Q D GLAMSRSFGD+ VG T++P+V + K +++ GE AF ILASDG+W+ + E ++ V S G P++A ALV AR RW+ + IDDIT VV
Sbjct: 306 GSYRVWLQ-DVDMPGLAMSRSFGDSVAKTVGVTAEPDV---------TTVEKLKFSSVDKKNGE------------RPSAFAILASDGIWEFMTTDECIDFVAACIVDS--------------GMAPQEACTALVEEARDRWDAEEDV-IDDITAAVV 426 The following BLAST results are available for this feature:
BLAST of EWM27477.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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