EWM27477.1, cds3199 (CDS) Nannochloropsis gaditana

Overview
NameEWM27477.1
Unique Namecds3199
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:999333..1000258 +
Alignment locationCM002460.1:1001108..1001638 +
Alignment locationCM002460.1:1001811..1001928 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27477.1
Productprotein phosphatase 2c ptc1
Orig transcript idgnl|cribi|Naga_100174g11.7292.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:999333..1000258 +
CM002460.1supercontigCM002460.1:1001108..1001638 +
CM002460.1supercontigCM002460.1:1001811..1001928 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004722protein serine/threonine phosphatase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006470protein dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR015655PP2C
IPR001932PPM-type_phosphatase_dom
Homology
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|585109738|gb|EWM27477.1| (protein phosphatase 2c ptc1 [Nannochloropsis gaditana])

HSP 1 Score: 1075.46 bits (2780), Expect = 0.000e+0
Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 0
Query:    1 MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLRPRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAKISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCSKGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARPSHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHPIQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKFISKLRGISNRNLDSGGTGEIDTRC 524
            MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLRPRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAKISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCSKGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARPSHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHPIQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKFISKLRGISNRNLDSGGTGEIDTRC
Sbjct:    1 MYGSKMSDSTFNASSSVQMPPSGTHTEWTADKCYQDTMDIPTVLPMAHLRPRVSKTAAITAEMAPPPVAPSLAPRRTSPLLISAYARMRKSVSEGCMAAKISGPSSHITHDIRRRIRHQQHHPYPSSPPPTSCGIEKGDRPILEAGRPCSKGPCESMKDQRHANHMYTYGSSLSILGATSTGLPASLSLGVRHDAGGARPSHEGIPRSPKRPASTERQHAEASHAEEGSSQMNETTHMQDDGAASTLSHPIQPAAHGGGDMCPSDHDRQGGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRRMKVHSGDPTCLKFISKLRGISNRNLDSGGTGEIDTRC 524          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|299472680|emb|CBN78332.1| (Protein phosphatase 2C containing protein [Ectocarpus siliculosus])

HSP 1 Score: 102.064 bits (253), Expect = 1.388e-20
Identity = 65/166 (39.16%), Postives = 84/166 (50.60%), Query Frame = 0
Query:  317 VTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSP 482
            + +GPAR+WY+ RG+  GLAMSRS GD   H  G +S+PEV E+ +                                D  D FLILA+DG+WDV +  +AV+IV  YA        R  G      W P+ AA+ L   AR RWE LS + +DDIT +VVRL  P
Sbjct:  161 IPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVKEHQI--------------------------------DANDQFLILATDGVWDVTEIGQAVQIVQGYA-------SRCRG----NSWDPQGAASLLAHSARKRWEGLSAV-VDDITALVVRLTVP 282          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|676395601|ref|XP_009041078.1| (hypothetical protein AURANDRAFT_67405 [Aureococcus anophagefferens] >gi|323448327|gb|EGB04227.1| hypothetical protein AURANDRAFT_67405 [Aureococcus anophagefferens])

HSP 1 Score: 85.5001 bits (210), Expect = 5.257e-16
Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 0
Query:  334 GLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLIL------ASDGLWDVVDNQEAVEIV-----DRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRR 487
            GLAMSRSFGD+ VH +G + +PE+ ++ +                                DE DAFLI       A+DG+WDV+DN +A +IV      RYAR    +  +     + G W P +AA  L   AR RWE LSP+ IDDIT +VV L     R R
Sbjct:   28 GLAMSRSFGDSIVHGLGVSCEPEITDHRI--------------------------------DESDAFLIWLESIYSATDGVWDVIDNNQAAQIVHSHLTSRYARP--LSQPQHTTDCRSGEWDPSEAAHMLCMSARRRWESLSPM-IDDITALVVDLHKLTGRLR 157          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|298709346|emb|CBJ31281.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.781 bits (164), Expect = 1.048e-8
Identity = 56/174 (32.18%), Postives = 77/174 (44.25%), Query Frame = 0
Query:  320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEV------EDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLPSPRERRR 487
            GP R+W   + D  GLAMSR+ GDT  H VG TS P+                C   ++E G +G ++  G         +    A LILA+DGLW+ + +QEAV+I    A+ S                +PR+A  AL   A +RW     + +DDIT  V      RE   
Sbjct:  185 GPPRVWLADK-DTPGLAMSRTLGDTVAHTVGVTSDPDTYR-------------CDLHDQETGVQGRVNNGGGGGGGGDGKDQAAAAVLILATDGLWEFISDQEAVDIA---AQCS----------------EPRQAVLALTHEATNRWMKEEQV-VDDITVCVAFFKGWREEEE 324          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|545707114|ref|XP_005705872.1| (protein phosphatase 2C isoform 1 [Galdieria sulphuraria] >gi|452822332|gb|EME29352.1| protein phosphatase 2C isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 68.1662 bits (165), Expect = 1.628e-8
Identity = 49/161 (30.43%), Postives = 72/161 (44.72%), Query Frame = 0
Query:  319 LGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRL 479
            +GP R+W        GLAM+RSFGD+ +H+VG +  PEV              TCI                     E D F +LASDG+W+ + +QE V+ + +Y R                    ++AA +LV  A  RW   + L +DD+T +V+ L
Sbjct:  365 IGPLRVWLADEW-IPGLAMTRSFGDSLLHSVGVSEIPEV--------------TCIQLS------------------EMDKFCVLASDGVWEFMSSQEVVDFLGKYRRKC----------------SAQEAAESLVQEAVKRWRK-NELVVDDVTAIVIWL 475          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|922868756|gb|KOO35057.1| (hypothetical protein Ctob_007757 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 67.3958 bits (163), Expect = 3.301e-8
Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 0
Query:  321 PARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGRE-EEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRLP 480
            PAR+W      R GLAMSRS GD  V  VG  + P+V   ++    ++     + R  E +GG+G             D F+I+ASDG+W+  ++ EA  IV++Y  A+                   +A + LV  A +RW+       DDIT ++  LP
Sbjct:  275 PARVWAH---GRIGLAMSRSIGDGEVKNVGVIADPDVTHVVLS---ADDVMHAVRRPPEVKGGDG-------------DLFIIVASDGVWEFTESDEACRIVEKYTSAT-------------------EACSQLVHEAAARWKRFEGTYRDDITAIITFLP 397          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|926777186|ref|XP_013897067.1| (Protein phosphatase 2C containing protein [Monoraphidium neglectum] >gi|761966272|gb|KIY98047.1| Protein phosphatase 2C containing protein [Monoraphidium neglectum])

HSP 1 Score: 65.855 bits (159), Expect = 7.573e-8
Identity = 53/183 (28.96%), Postives = 78/183 (42.62%), Query Frame = 0
Query:  299 ARRVLSTGDVSDPKLLPPVTLGPARLWYQYRGDRN--GLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRL 479
            A RVL++G      +     LGP R+W +   D N  GL M+RSFGD     VG    P+V+ Y +K      G  C                         ++++L SDG+++ +D+QE V +V   A+                G  P +AA  LV  AR RW+      IDD T +V+ +
Sbjct:  166 ADRVLASGGRIASYMFNDEPLGPPRVWLR---DLNVPGLCMTRSFGDAVAATVGVIDSPDVVTYPLKPEDRRAGLLC-------------------------SYVVLMSDGIFEFMDSQEVVAMVHTLAQQ---------------GHGPNEAAKQLVREARRRWQQEEQDIIDDCTAMVLHI 305          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|567997114|gb|ETL47204.1| (hypothetical protein L916_03040 [Phytophthora parasitica])

HSP 1 Score: 63.5438 bits (153), Expect = 4.392e-7
Identity = 53/158 (33.54%), Postives = 69/158 (43.67%), Query Frame = 0
Query:  320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVV 477
            G  R+W Q   D  GLAMSRSFGD+    VG T++P+V                    E+     V  + G     E  AF ILASDG+W+ +   E ++ V      S              G  P++A  ALV  AR RW+    + IDDIT  VV
Sbjct:  306 GSYRVWLQ-DVDMPGLAMSRSFGDSVAKTVGVTAEPDVTTV-----------------EKLKFSSVDKKNG-----EPSAFAILASDGIWEFMTTDECIDFVAACIVDS--------------GMAPQEACTALVEEARDRWDAEEDV-IDDITAAVV 425          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|570958779|gb|ETP23758.1| (hypothetical protein F441_03171 [Phytophthora parasitica CJ01A1] >gi|570994671|gb|ETP51745.1| hypothetical protein F442_03173 [Phytophthora parasitica P10297])

HSP 1 Score: 62.7734 bits (151), Expect = 7.418e-7
Identity = 52/158 (32.91%), Postives = 70/158 (44.30%), Query Frame = 0
Query:  320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVV 477
            G  R+W Q   D  GLAMSRSFGD+    VG T++P+V         +   K      +++ GE               AF ILASDG+W+ +   E ++ V      S              G  P++A  ALV  AR RW+    + IDDIT  VV
Sbjct:  306 GSYRVWLQ-DVDMPGLAMSRSFGDSVAKTVGVTAEPDV---------TTVEKLKFSSVDKKNGE------------RPSAFAILASDGIWEFMTTDECIDFVAACIVDS--------------GMAPQEACTALVEEARDRWDAEEDV-IDDITAAVV 426          
BLAST of EWM27477.1 vs. NCBI_GenBank
Match: gi|675182999|ref|XP_008900384.1| (hypothetical protein PPTG_07771 [Phytophthora parasitica INRA-310] >gi|566031039|gb|ETI53950.1| hypothetical protein F443_03191 [Phytophthora parasitica P1569] >gi|567968684|gb|ETK93810.1| hypothetical protein L915_03070 [Phytophthora parasitica] >gi|568026310|gb|ETM00303.1| hypothetical protein L917_02969 [Phytophthora parasitica] >gi|568056776|gb|ETM53482.1| hypothetical protein L914_03038 [Phytophthora parasitica] >gi|568099391|gb|ETN14105.1| hypothetical protein PPTG_07771 [Phytophthora parasitica INRA-310] >gi|570334685|gb|ETO82633.1| hypothetical protein F444_03258 [Phytophthora parasitica P1976] >gi|970656426|gb|KUF94438.1| protein phosphatase 2C 48 [Phytophthora nicotianae])

HSP 1 Score: 62.7734 bits (151), Expect = 7.753e-7
Identity = 52/158 (32.91%), Postives = 70/158 (44.30%), Query Frame = 0
Query:  320 GPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVV 477
            G  R+W Q   D  GLAMSRSFGD+    VG T++P+V         +   K      +++ GE               AF ILASDG+W+ +   E ++ V      S              G  P++A  ALV  AR RW+    + IDDIT  VV
Sbjct:  306 GSYRVWLQ-DVDMPGLAMSRSFGDSVAKTVGVTAEPDV---------TTVEKLKFSSVDKKNGE------------RPSAFAILASDGIWEFMTTDECIDFVAACIVDS--------------GMAPQEACTALVEEARDRWDAEEDV-IDDITAAVV 426          
The following BLAST results are available for this feature:
BLAST of EWM27477.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109738|gb|EWM27477.1|0.000e+0100.00protein phosphatase 2c ptc1 [Nannochloropsis gadit... [more]
gi|299472680|emb|CBN78332.1|1.388e-2039.16Protein phosphatase 2C containing protein [Ectocar... [more]
gi|676395601|ref|XP_009041078.1|5.257e-1636.97hypothetical protein AURANDRAFT_67405 [Aureococcus... [more]
gi|298709346|emb|CBJ31281.1|1.048e-832.18conserved unknown protein [Ectocarpus siliculosus][more]
gi|545707114|ref|XP_005705872.1|1.628e-830.43protein phosphatase 2C isoform 1 [Galdieria sulphu... [more]
gi|922868756|gb|KOO35057.1|3.301e-831.06hypothetical protein Ctob_007757 [Chrysochromulina... [more]
gi|926777186|ref|XP_013897067.1|7.573e-828.96Protein phosphatase 2C containing protein [Monorap... [more]
gi|567997114|gb|ETL47204.1|4.392e-733.54hypothetical protein L916_03040 [Phytophthora para... [more]
gi|570958779|gb|ETP23758.1|7.418e-732.91hypothetical protein F441_03171 [Phytophthora para... [more]
gi|675182999|ref|XP_008900384.1|7.753e-732.91hypothetical protein PPTG_07771 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3207rna3207Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications