rna3204, rna3204 (mRNA) Nannochloropsis gaditana

Overview
Namerna3204
Unique Namerna3204
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length558
Alignment locationCM002460.1:993850..995444 +

Link to JBrowse

Properties
Property NameValue
Productsmad nuclear interacting protein 1
Orig transcript idgnl|cribi|Naga_100174g8.7289.mrna
Orig protein idgnl|cribi|Naga_100174g8.7289
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:993850..995444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100174g8gene3082Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3204rna3204-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27474.1cds3196Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3204 ID=rna3204|Name=rna3204|organism=Nannochloropsis gaditana|type=mRNA|length=558bp
ATGGCTACGACGGGTCCGGCTAAGAAGAGTAAGCGGACCCTCCCGGTCAG
TAAGGTCCCCGTGCTCGGGCCAACAGGACTCATCTCTCCCCAGGCTATAC
AAGCTGCGGCAAAAAAATTGGAACTCCCGGAGATCGATCAAGAGGCCGCA
TCTTTTGTCGCCACCACAGTCGAATATCACCTCCGCGAGATATTGGAGGA
CGCGATCAAACTGCAAAATCAAAGCAAACGCCATTCCTTGACGGTCGATG
ACCTGAATTTCGTCATGCGCCTCCGTGGGCAACAGCCTCTGTACGGCTAC
GGCGCCGGGGCGGCGGCAACACAGGAAGTGACGACAACGGACGGAGAGCA
GGCCACGGTGGTCCTATCGGGCCTGGGAGAAAGAAAAGAGACGCTTGTGC
GAGCCATGCAGACGGAGCTGCCCAAGGTTCCCCGCGAAGTCGGGCTTCTT
CTCCACTGGCTCGCTGTGGATGGTGTGCAGCCTCGCACCCCGTCCAACCC
GTCTCCTCCCCCCCTCAATGCCCCCCCGCCCCCCTTCAGGTGGAAGGTAA
CGCCTTAG
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protein sequence of rna3204

>rna3204-protein ID=rna3204-protein|Name=rna3204|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MVTGGAAESRTRRPSSLHSICFLSPRPCRMPRSRSRSRSRSLHRQRKRSG
SRSRYGTSSPLSSSRYHSPHRGGDQKGQSRRRRRSQESEEGDRDRRRRHR
GLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRD
ISLQERERDGRGARLRKSTEARAQAGAGREREALVPGGEPSRGQEERYEW
GKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNV
YKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRHGV
ADLKVEHPSCSKQHAVLQFRQKHEGAEVKPYLMDLESVNKTRLNGEEVPP
ARYVELRAQDTIQFGLSSREYVLMHESLVGSS
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mRNA from alignment at CM002460.1:993850..995444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3204 ID=rna3204|Name=rna3204|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp|location=Sequence derived from alignment at CM002460.1:993850..995444+ (Nannochloropsis gaditana)
cacacacacacacacacacacacacacacacatacgAAGTAAATTTATCC
CTGAGACCAACAATATTGTTCCCATTATCCTTTACTTGCTGacttcatcc
tctccttcgcatGGTCacaggaggagcggcggagTCACGAACGAGGAGGC
CTTCCTCATTACACTCCATTTGCTTCCTGTCTCCCCGACCTTGTCGCATG
CCACGTAGTCGCAGCCGAAGCCGTAGCCGTAGCTTACATCGAcagcggaa
gaggagcgggagtCGGAGCAGATATGGCACTTCTTCCCCATTATCCTCGT
CACGATACCACAGTCCCCATCGGGGGGGGGACCAGAAAGGTCAAagccgc
aggaggagacgaagccaagagagtgaggaaggggacagaGATCGTAGAAG
GAGGCATCGAGGTTTAGAAAGGGAAGAATCCCCTgcgccaggagggggga
accAGGCTCAGGGGCAAAGGTcacggtgggaaaagggccgaggaaggcag
gagggcctCTCAGGCGGGGAGAACGGAGGGAACGGGCGCtacgaagagga
gaggagggatatCAGCCTGCAGGAGCGTGAAAGGGACGGTCGTGGCGCAC
GACTCAGGAAAAGCACCGAGGCAAGAGCCCAGGCaggcgcagggagagag
cgcgAGGCTTTAGTCCCGGGCGGAGAGCCGTCCCGTGGGCAAGAAGAACG
CTAGTAAGTGCAGGGCCGGAGAGGGGGGGTGTAGGGGGGTATTGTGGCAC
TAActggagtggaggggggaaagtaaaaggcggaggcgggaagctACCGT
GCGTGCAGCAGAGGCCTAGGTCCCCGTGGACATCGGTCTTGTCGTTATCT
TTTCCCCTTAATAACGCTTTTCCATCGGTGCCAACCCTATCCTTGACCCT
ATTCCCTAACCCCAATTCTTTTTCCCGCCAGTGAATGGGGCAAGCCCGCC
ATCTCCCCGTTGAACGGCGATGCGTCAagcagaggggaggacggaggaaa
gggggaggagaaagcacCGACCTTGGTGGCCAAACCCAATTTCGGCCTGA
CTGGCGCGCTGGCACAAGATGCTCAGACGGGGAACGTGTACAAGGGCGTG
GTGTTGAAGTGGAGCGAGCCGGAcgacgcccgcctcccctcgcgGGGCTG
GCGGTTGTACGTGTTCAAACAGGGGGAGTTGAAGGACACCCTTCACTTGC
ACCGTCAGAGCGCCTACCTGGTGGGGCGGCACGGTGTGGCCGATCTGAAG
GTGGAACATCCTTCCTGTTCCAAGCAGCACGCCGTCCTCCAGTTCCGCCA
AAAGCATGAGGGGGCCGAGGTGAAACCCTACCTGATGGATCTGGAGTCCG
TGAACAAGACCAGGCTgaatggggaggaggttccccccgcccggtaCGTG
GAACTGCGGGCGCAGGACACGATCCAATTCGGCCTTTCCTCGCGGGAATA
CGTGCTTATGCACGAGAGCCTGGTCGGGTCGAGCTAATGGACAGACgcag
aggaggttggggaggaacgaggggagggtctgggggggggaacggtcGCC
CTGAACCGGGTGGAcacgaaagggaaaagaaagaaacgGTTGAGC
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Coding sequence (CDS) from alignment at CM002460.1:993850..995444+

>rna3204 ID=rna3204|Name=rna3204|organism=Nannochloropsis gaditana|type=CDS|length=2298bp|location=Sequence derived from alignment at CM002460.1:993850..995444+ (Nannochloropsis gaditana)
atGGTCacaggaggagcggcggagTCACGAACGAGGAGGCCTTCCTCATT
ACACTCCATTTGCTTCCTGTCTCCCCGACCTTGTCGCATGCCACGTAGTC
GCAGCCGAAGCCGTAGCCGTAGCTTACATCGAcagcggaagaggagcggg
agtCGGAGCAGATATGGCACTTCTTCCCCATTATCCTCGTCACGATACCA
CAGTCCCCATCGGGGGGGGGACCAGAAAGGTCAAagccgcaggaggagac
gaagccaagagagtgaggaaggggacagaGATCGTAGAAGGAGGCATCGA
GGTTTAGAAAGGGAAGAATCCCCTgcgccaggaggggggaaccAGGCTCA
GGGGCAAAGGTcacggtgggaaaagggccgaggaaggcaggagggcctCT
CAGGCGGGGAGAACGGAGGGAACGGGCGCtacgaagaggagaggagggat
atCAGCCTGCAGGAGCGTGAAAGGGACGGTCGTGGCGCACGACTCAGGAA
AAGCACCGAGGCAAGAGCCCAGGCaggcgcagggagagagcgcgAGGCTT
TAGTCCCGGGCGGAGAGCCGTCCCGTGGGCAAGAAGAACGCTATGAATGG
GGCAAGCCCGCCATCTCCCCGTTGAACGGCGATGCGTCAagcagagggga
ggacggaggaaagggggaggagaaagcacCGACCTTGGTGGCCAAACCCA
ATTTCGGCCTGACTGGCGCGCTGGCACAAGATGCTCAGACGGGGAACGTG
TACAAGGGCGTGGTGTTGAAGTGGAGCGAGCCGGAcgacgcccgcctccc
ctcgcgGGGCTGGCGGTTGTACGTGTTCAAACAGGGGGAGTTGAAGGACA
CCCTTCACTTGCACCGTCAGAGCGCCTACCTGGTGGGGCGGCACGGTGTG
GCCGATCTGAAGGTGGAACATCCTTCCTGTTCCAAGCAGCACGCCGTCCT
CCAGTTCCGCCAAAAGCATGAGGGGGCCGAGGTGAAACCCTACCTGATGG
ATCTGGAGTCCGTGAACAAGACCAGGCTgaatggggaggaggttcccccc
gcccggtaCGTGGAACTGCGGGCGCAGGACACGATCCAATTCGGCCTTTC
CTCGCGGGAATACGTGCTTATGCACGAGAGCCTGGTCGGGTCGAGCTAAa
tGGTCacaggaggagcggcggagTCACGAACGAGGAGGCCTTCCTCATTA
CACTCCATTTGCTTCCTGTCTCCCCGACCTTGTCGCATGCCACGTAGTCG
CAGCCGAAGCCGTAGCCGTAGCTTACATCGAcagcggaagaggagcggga
gtCGGAGCAGATATGGCACTTCTTCCCCATTATCCTCGTCACGATACCAC
AGTCCCCATCGGGGGGGGGACCAGAAAGGTCAAagccgcaggaggagacg
aagccaagagagtgaggaaggggacagaGATCGTAGAAGGAGGCATCGAG
GTTTAGAAAGGGAAGAATCCCCTgcgccaggaggggggaaccAGGCTCAG
GGGCAAAGGTcacggtgggaaaagggccgaggaaggcaggagggcctCTC
AGGCGGGGAGAACGGAGGGAACGGGCGCtacgaagaggagaggagggata
tCAGCCTGCAGGAGCGTGAAAGGGACGGTCGTGGCGCACGACTCAGGAAA
AGCACCGAGGCAAGAGCCCAGGCaggcgcagggagagagcgcgAGGCTTT
AGTCCCGGGCGGAGAGCCGTCCCGTGGGCAAGAAGAACGCTATGAATGGG
GCAAGCCCGCCATCTCCCCGTTGAACGGCGATGCGTCAagcagaggggag
gacggaggaaagggggaggagaaagcacCGACCTTGGTGGCCAAACCCAA
TTTCGGCCTGACTGGCGCGCTGGCACAAGATGCTCAGACGGGGAACGTGT
ACAAGGGCGTGGTGTTGAAGTGGAGCGAGCCGGAcgacgcccgcctcccc
tcgcgGGGCTGGCGGTTGTACGTGTTCAAACAGGGGGAGTTGAAGGACAC
CCTTCACTTGCACCGTCAGAGCGCCTACCTGGTGGGGCGGCACGGTGTGG
CCGATCTGAAGGTGGAACATCCTTCCTGTTCCAAGCAGCACGCCGTCCTC
CAGTTCCGCCAAAAGCATGAGGGGGCCGAGGTGAAACCCTACCTGATGGA
TCTGGAGTCCGTGAACAAGACCAGGCTgaatggggaggaggttccccccg
cccggtaCGTGGAACTGCGGGCGCAGGACACGATCCAATTCGGCCTTTCC
TCGCGGGAATACGTGCTTATGCACGAGAGCCTGGTCGGGTCGAGCTAA
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Synonyms
Publications