EWM27474.1, cds3196 (CDS) Nannochloropsis gaditana

Overview
NameEWM27474.1
Unique Namecds3196
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:993960..994552 +
Alignment locationCM002460.1:994781..995336 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27474.1
Productsmad nuclear interacting protein 1
Orig transcript idgnl|cribi|Naga_100174g8.7289.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:993960..994552 +
CM002460.1supercontigCM002460.1:994781..995336 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|585109735|gb|EWM27474.1| (smad nuclear interacting protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 760.755 bits (1963), Expect = 0.000e+0
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query:    1 MVTGGAAESRTRRPSSLHSICFLSPRPCRMPRSRSRSRSRSLHRQRKRSGSRSRYGTSSPLSSSRYHSPHRGGDQKGQSRRRRRSQESEEGDRDRRRRHRGLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRDISLQERERDGRGARLRKSTEARAQAGAGREREALVPGGEPSRGQEERYEWGKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRHGVADLKVEHPSCSKQHAVLQFRQKHEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHESLVGSS 382
            MVTGGAAESRTRRPSSLHSICFLSPRPCRMPRSRSRSRSRSLHRQRKRSGSRSRYGTSSPLSSSRYHSPHRGGDQKGQSRRRRRSQESEEGDRDRRRRHRGLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRDISLQERERDGRGARLRKSTEARAQAGAGREREALVPGGEPSRGQEERYEWGKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRHGVADLKVEHPSCSKQHAVLQFRQKHEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHESLVGSS
Sbjct:    1 MVTGGAAESRTRRPSSLHSICFLSPRPCRMPRSRSRSRSRSLHRQRKRSGSRSRYGTSSPLSSSRYHSPHRGGDQKGQSRRRRRSQESEEGDRDRRRRHRGLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRDISLQERERDGRGARLRKSTEARAQAGAGREREALVPGGEPSRGQEERYEWGKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRHGVADLKVEHPSCSKQHAVLQFRQKHEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHESLVGSS 382          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|1183368561|gb|ORX94608.1| (SMAD/FHA domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 185.267 bits (469), Expect = 7.781e-53
Identity = 89/154 (57.79%), Postives = 111/154 (72.08%), Query Frame = 0
Query:  233 PNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFRQKHEGAEV-------KPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHESL 378
            PNFGL+G LA +    N Y GVV+K++EP +AR P++ WRLYVFK  E  D LH+HRQSAYLVGR   +AD+ V+HPSCSKQHA  QFRQ  E  EV       KPY++DLE+ N T +NGE +PP RY EL+  D I+FG S+REYVL+HE+L
Sbjct:  109 PNFGLSGKLAAET---NTYNGVVVKYNEPPEARNPTKKWRLYVFKGKEQIDLLHIHRQSAYLVGRDRKIADIPVDHPSCSKQHAAFQFRQVVEKNEVGEIKRTVKPYIIDLEATNGTFVNGERIPPTRYYELKVSDVIKFGSSTREYVLLHENL 259          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|1021808403|gb|KZP00681.1| (SMAD/FHA domain-containing protein [Calocera viscosa TUFC12733])

HSP 1 Score: 179.489 bits (454), Expect = 5.872e-50
Identity = 94/185 (50.81%), Postives = 121/185 (65.41%), Query Frame = 0
Query:  203 PAISPLNGDASSRGEDGGKGEEKAPTL-VAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFRQK-------HEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHESL 378
            PA  P  G + SR    G  E  AP    AKPNF  +GALA    T N   GVVLK++EP +AR P+R WRLYVFK  E  + LH+ +QSAYLVGR   VAD+ +EHPSCSKQHAV+Q+RQ           + VKP+++DL+S N T +N EE+P +R+ EL+  D I+FG S+REYVL+HE +
Sbjct:  126 PAAFPTFGPSGSRSPAAGSRELSAPQEDKAKPNFNQSGALAAATNTVN---GVVLKYNEPPEARKPTRNWRLYVFKGDEQVELLHISKQSAYLVGRDRVVADIPIEHPSCSKQHAVIQYRQVTSRNEFGDTSSSVKPFIIDLDSTNGTFVNDEEIPKSRFYELKESDVIKFGQSTREYVLLHEDV 307          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|1001610382|gb|KXS14160.1| (SMAD/FHA domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 177.563 bits (449), Expect = 1.577e-49
Identity = 93/177 (52.54%), Postives = 116/177 (65.54%), Query Frame = 0
Query:  211 DASSRGEDGGKGEEKAPTLVA------KPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFR----QKHEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHE 376
            DA +   D G+G E   T         KPNF L+G L  +    N YKGVVLK+SEP +AR     WRLYVFK G+  D  H+HRQSAYL+GR   VAD+ V+HPSCSKQHAV+Q+R    +  EG  VKPY++DL+S N T +NG  +P +RYVELR  D ++FG SSREYV+M E
Sbjct:  106 DAKAEVPDVGEGAEGVDTAEGSEQPKEKPNFALSGKLNAEQ---NTYKGVVLKYSEPPEARKSGVKWRLYVFKDGKETDIFHIHRQSAYLLGRDRLVADIPVDHPSCSKQHAVVQYRLVEGKDGEGKAVKPYIIDLDSANGTHVNGSRIPSSRYVELRQGDVVKFGFSSREYVVMRE 279          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|530617353|ref|XP_005298412.1| (PREDICTED: smad nuclear-interacting protein 1 [Chrysemys picta bellii])

HSP 1 Score: 179.874 bits (455), Expect = 2.005e-49
Identity = 85/170 (50.00%), Postives = 119/170 (70.00%), Query Frame = 0
Query:  216 GEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFRQKHE-------GAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHES 377
            G+  G+ ++K PT   KP+F L+GAL +D+   N ++GVV+K+SEP +AR+P + WRLY FK  E+   +++HRQSAYL+GRH  +AD+ ++HPSCSKQHAV Q+R           G  VKPY++DL S N T LN + + P RY EL+ +D ++FG SSREYVL+HES
Sbjct:  183 GKPDGENKDKDPTNKEKPSFELSGALLEDS---NTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNQRIEPQRYYELKEKDVLKFGFSSREYVLLHES 349          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|511832320|ref|XP_004740815.1| (PREDICTED: smad nuclear-interacting protein 1 [Mustela putorius furo])

HSP 1 Score: 179.874 bits (455), Expect = 3.795e-49
Identity = 114/309 (36.89%), Postives = 162/309 (52.43%), Query Frame = 0
Query:   77 GQSRRRRRSQESEEGDRDRRRRHRGLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRDISLQERERDGRGARLRKSTEARAQAGAGREREALVPGGEPSRGQEERYEWGKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFRQKHE-------GAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHES 377
            GQ  RR R+      DRDR R H    R  +  PG G QAQG+                         + + +++  Q+ ER+   AR R++ +    + +G E +  VP               +P               GG  ++K P    KP+F L+GAL +D    N ++GVV+K+SEP +AR+P + WRLY FK  E+   +++HRQSAYL+GRH  +AD+ ++HPSCSKQHAV Q+R           G  VKPY++DL S N T LN + + P RY EL+ +D ++FG SSREYVL+HES
Sbjct:  130 GQEHRRARN-----SDRDRHRGHSHQRRSSNERPGSG-QAQGR-------------------------DRDVQNLQAQDIEREFYNARRRENRQKNEVSASGNESQGSVP---------------RP---------------GGNNKDKEPPAKEKPSFELSGALLEDT---NTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 374          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|1044427671|ref|XP_017365248.1| (PREDICTED: smad nuclear-interacting protein 1 [Cebus capucinus imitator])

HSP 1 Score: 179.489 bits (454), Expect = 5.772e-49
Identity = 113/294 (38.44%), Postives = 154/294 (52.38%), Query Frame = 0
Query:   92 DRDRRRRHRGLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRDISLQERERDGRGARLRKSTEARAQAGAGREREALVPGGEPSRGQEERYEWGKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFRQKHE-------GAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHES 377
            DRDR R H    R  +  PG G   QGQ      GR R                 + +++  QE ER+   AR R+  +     G+G E + LVP                                GG  +EK   +  KP+F L+GAL +D    N ++GVV+K+SEP +AR+P + WRLY FK  E+   +++HRQSAYL+GRH  +AD+ ++HPSCSKQHAV Q+R           G  VKPY++DL S N T LN + + P RY EL+ +D ++FG SSREYVL+HES
Sbjct:  139 DRDRHRGHSHQRRTSNERPGSG---QGQ------GRDR-----------------DTQNLQAQEDEREFYNARRREHRQRNDVGGSGSESQELVP------------------------------RPGGNNKEKEVPVKEKPSFELSGALLEDT---NTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 373          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|1168893434|ref|XP_020489156.1| (smad nuclear-interacting protein 1 [Labrus bergylta])

HSP 1 Score: 179.489 bits (454), Expect = 6.021e-49
Identity = 85/170 (50.00%), Postives = 113/170 (66.47%), Query Frame = 0
Query:  215 RGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFR-------QKHEGAEVKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHE 376
            R E+G      AP  V KPNFGL+GAL +D    N ++GVV+K++EP +AR+P R WRLY FK  E    +++HRQSAYL+GR   +AD+ ++HPSCSKQHAV Q+R           G  V+PY++DL S N T LN + +   RY EL+ +D I+FG SSREYVL+HE
Sbjct:  208 RSEEGDDDSNPAPAEVEKPNFGLSGALTEDT---NTFRGVVIKYNEPPEARIPKRRWRLYPFKNDEPLPVMYIHRQSAYLLGRQRKIADIPIDHPSCSKQHAVFQYRLVEFTRADGTSGRRVRPYIIDLGSGNGTYLNNQRIESQRYYELKEKDVIKFGFSSREYVLLHE 374          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|548461519|ref|XP_005678741.1| (PREDICTED: smad nuclear-interacting protein 1 [Capra hircus])

HSP 1 Score: 178.333 bits (451), Expect = 1.379e-48
Identity = 86/175 (49.14%), Postives = 121/175 (69.14%), Query Frame = 0
Query:  211 DASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFR-QKHEGAE------VKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHES 377
            DA  R   GG  +++   +  KP+F L+GAL +D    N ++GVV+K+SEP +AR+P + WRLY FK  E+   +++HRQSAYL+GRH  +AD+ ++HPSCSKQHAV Q+R  +H  A+      VKPY++DL S N T LN + + P RY EL+ +D ++FG SSREYVL+HES
Sbjct:  205 DAQPRPGPGGNNKDREVPVKEKPSFELSGALLEDT---NTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEHTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 376          
BLAST of EWM27474.1 vs. NCBI_GenBank
Match: gi|589934678|ref|XP_006980119.1| (PREDICTED: smad nuclear-interacting protein 1 [Peromyscus maniculatus bairdii])

HSP 1 Score: 178.333 bits (451), Expect = 1.436e-48
Identity = 132/355 (37.18%), Postives = 187/355 (52.68%), Query Frame = 0
Query:   33 SRSRSRSRS-LHRQRKRSGSRSRYGTSSPLSSSRYHSPHRGGDQKGQSRRRRRSQESEEGDRDRRRRHRGLEREESPAPGGGNQAQGQRSRWEKGRGRQEGLSGGENGGNGRYEEERRDISLQERERDGRGARLRKSTEARAQ-AGAGREREALVPGGEPSRGQEERYEWGKPAISPLNGDASSRGEDGGKGEEKAPTLVAKPNFGLTGALAQDAQTGNVYKGVVLKWSEPDDARLPSRGWRLYVFKQGELKDTLHLHRQSAYLVGRH-GVADLKVEHPSCSKQHAVLQFR-QKHEGAE------VKPYLMDLESVNKTRLNGEEVPPARYVELRAQDTIQFGLSSREYVLMHES 377
            SR+R  SRS   ++ K SG RS+   +    S  Y +     +++   RR R  ++  E     +RR R  ERE     G   Q +    R   G+GR               + + +++  QE ERD   AR R   E R Q  GAG E   L+P               +PA              G +G+E    +  KP+F L+GAL +D    N ++GVV+K+SEP +AR+P + WRLY FK  E+   +++HRQSAYL+GRH  +AD+ ++HPSCSKQHAV Q+R  +H  A+      VKPY++DL S N T LN + + P RY EL+ +D ++FG SSREYVL+HES
Sbjct:   64 SRARGASRSPAKKKNKSSGRRSKSPRTKRSRSPHYSTVKVKQEREDHPRRGREDRQHREPSEQEQRRARNSERERDRHRGHSRQKRSSDERPVSGQGR---------------DRDSQNLQAQEEERDFHNARRR---EHRQQNEGAGGEAHELIP---------------RPA--------------GNRGKEVP--VKEKPSFELSGALLEDT---NTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEHTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 366          
The following BLAST results are available for this feature:
BLAST of EWM27474.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109735|gb|EWM27474.1|0.000e+0100.00smad nuclear interacting protein 1 [Nannochloropsi... [more]
gi|1183368561|gb|ORX94608.1|7.781e-5357.79SMAD/FHA domain-containing protein [Basidiobolus m... [more]
gi|1021808403|gb|KZP00681.1|5.872e-5050.81SMAD/FHA domain-containing protein [Calocera visco... [more]
gi|1001610382|gb|KXS14160.1|1.577e-4952.54SMAD/FHA domain-containing protein [Gonapodya prol... [more]
gi|530617353|ref|XP_005298412.1|2.005e-4950.00PREDICTED: smad nuclear-interacting protein 1 [Chr... [more]
gi|511832320|ref|XP_004740815.1|3.795e-4936.89PREDICTED: smad nuclear-interacting protein 1 [Mus... [more]
gi|1044427671|ref|XP_017365248.1|5.772e-4938.44PREDICTED: smad nuclear-interacting protein 1 [Ceb... [more]
gi|1168893434|ref|XP_020489156.1|6.021e-4950.00smad nuclear-interacting protein 1 [Labrus bergylt... [more]
gi|548461519|ref|XP_005678741.1|1.379e-4849.14PREDICTED: smad nuclear-interacting protein 1 [Cap... [more]
gi|589934678|ref|XP_006980119.1|1.436e-4837.18PREDICTED: smad nuclear-interacting protein 1 [Per... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3204rna3204Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications