|
|
Properties
| Property Name | Value |
|---|
| Product | tata-binding protein-associated-factor |
| Orig transcript id | gnl|cribi|Naga_100174g7.7285.mrna |
| Orig protein id | gnl|cribi|Naga_100174g7.7285 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:992522..993454 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3203 ID=rna3203|Name=rna3203|organism=Nannochloropsis gaditana|type=mRNA|length=969bp
ATGTCCCCCGCCACGCCCGAAGCGGAGCGTCGGGCCTACTACGTGGGTGT
GGGCACGGAAACGGGGCTGCACGAGCTTGTCCCCTACCTCTCCCTCCACA
TCCACAACACGGTCACGGCCGCGGTCGGGGCGGGGGGCCGGGGCTCGCTC
GATCCGCTCTGGGCTGTCATGCGCGTGTTTCGCTGCATGGTGGTGAACCC
GCACATGCACCTAGACCTGTATTTGCACCAAATGCTTCCAGGCGTGATGA
CCGTGATCGCCAACAACCGGCTGGGTTCCCATGGCGAAGGCGTCGCGGGC
CTGGCTGCGTCCAAAGAGACGAAGGGAGGGAGGGGGGCAGACTGGAAGGC
GGGCAACGGGTGGGGACAGACGGGGGGAGACGGGGCGGGCGACCACTATG
CCTTGCGGTCTTTCGCCGCCCAGACCCTGGCCATGCTCGTGAGGAAGTAC
TCGGGTGTTTACCGTCCATTGGCTTCGGTAATCTGCAAGACGTTTGCAGA
GCGGGTGGACGAATTTTTGAGCGTCGAACCTCCTGACAAGGGAGCCTTGG
CTACGCTGTATGGGACCATCGTAGGCATTCGGCATCTAGGGGTAAAGCCA
GTCGAGGTGGTCCTGATCCCCGTGGCTGGGCAGCTGCTAGAGCGGCTGAA
AGGGATCATGGAAGATCGAGGCGTGAAGTTGAGGAAGAGAATGGAGGCAC
AACATTGCTATACTGCCCTGGTTCCGGCAGTGGGCGAAGCGAGGGAGAGA
GAAGTGAAAAAGACTTTGAGCGCCGAGAGGGTCGTGTCTTTCGGAGAGGT
GGGGGTTGAAGTCGAGTTAAATGGAGAAAAGAATGAGGGCGGGAGGGACG
GAAAGACGACAGGACTAGGAATAACAGGAGAACAGTGGGAAGGACGTATC
GGGGCAGAGGCATTCCTGCCCTACGCAGCGCAAAGCTTGTGCTATCCTGA
ACTTCTTCTGGTTTTGTAG back to topprotein sequence of rna3203 >rna3203-protein ID=rna3203-protein|Name=rna3203|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAA
SFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGY
GAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLL
LHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP back to topmRNA from alignment at CM002460.1:992522..993454- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3203 ID=rna3203|Name=rna3203|organism=Nannochloropsis gaditana|type=mRNA|length=933bp|location=Sequence derived from alignment at CM002460.1:992522..993454- (Nannochloropsis gaditana)
ATGGCTACGACGGGTCCGGCTAAGAAGAGTAAGCGGACCCTCCCGGTCAG
TAAGGTCCCCGTGCTCGGGCCAACAGGACTCATCTCTCCCCAGGCTATAC
AAGCTGCGGCAAAAAAATTGGAACTCCCGGAGGTAAGCATATGTTTCGGT
CTGGCAAAGATCGGTACATGCTTACGCAACCGCTCTTAATGTTGGATTTC
AATGTTGTCATCGAACCTCCTCTCTCCCCCTCAGCCCCCCCCCACGGTCT
TATTCACCTTCCTTTTCCCGTTCCTCCCTCGCATCAGATCGATCAAGAGG
CCGCATCTTTTGTCGCCACCACAGTCGAATATCACCTCCGCGAGATATTG
GAGGACGCGATCAAACTGCAAAATCAAAGCAAACGCCATTCCTTGACGGT
CGATGACCTGAATTTCGTCATGCGCCTCCGTGGGCAACAGCCTCTGTACG
GCTACGGCGCCGGGGCGGCGGCAACACAGGAAGTGACGACAACGGACGGA
GAGCAGGCCACGGTGGTCCTATCGGGCCTGGGAGAAAGAAAAGAGACGCT
TGTGCGAGCCATGCAGACGGAGCTGCCCAAGGTTGTGGGCAGGATGGGAG
GGAATGGGTGGAAGGATGGGAGTCCGTAGCCGATGGAAGGTGCTTTGAGA
TCCCATTGGCAGTTCCGTGTAGTCCATGTGGTGGTATCTGCTTAACTTGT
CAGTGTCGCACGTCGTCTTTCCCAAGCCCTCTCTCGGTCACACCTCGCCT
TCTTGGCCTTCCAGTTTCGACTCATTCCTCTCTCCTCACTTCCCACCTTA
GGTTCCCCGCGAAGTCGGGCTTCTTCTCCACTGGCTCGCTGTGGATGGTG
TGCAGCCTCGCACCCCGTCCAACCCGTCTCCTCCCCCCCTCAATGCCCCC
CCGCCCCCCTTCAGGTGGAAGGTAACGCCTTAG back to topCoding sequence (CDS) from alignment at CM002460.1:992522..993454- >rna3203 ID=rna3203|Name=rna3203|organism=Nannochloropsis gaditana|type=CDS|length=1674bp|location=Sequence derived from alignment at CM002460.1:992522..993454- (Nannochloropsis gaditana)
GTTCCCCGCGAAGTCGGGCTTCTTCTCCACTGGCTCGCTGTGGATGGTGT
GCAGCCTCGCACCCCGTCCAACCCGTCTCCTCCCCCCCTCAATGCCCCCC
CGCCCCCCTTCAGGTGGAAGGTAACGCCTTAGATCGATCAAGAGGCCGCA
TCTTTTGTCGCCACCACAGTCGAATATCACCTCCGCGAGATATTGGAGGA
CGCGATCAAACTGCAAAATCAAAGCAAACGCCATTCCTTGACGGTCGATG
ACCTGAATTTCGTCATGCGCCTCCGTGGGCAACAGCCTCTGTACGGCTAC
GGCGCCGGGGCGGCGGCAACACAGGAAGTGACGACAACGGACGGAGAGCA
GGCCACGGTGGTCCTATCGGGCCTGGGAGAAAGAAAAGAGACGCTTGTGC
GAGCCATGCAGACGGAGCTGCCCAAGATGGCTACGACGGGTCCGGCTAAG
AAGAGTAAGCGGACCCTCCCGGTCAGTAAGGTCCCCGTGCTCGGGCCAAC
AGGACTCATCTCTCCCCAGGCTATACAAGCTGCGGCAAAAAAATTGGAAC
TCCCGGAGGTTCCCCGCGAAGTCGGGCTTCTTCTCCACTGGCTCGCTGTG
GATGGTGTGCAGCCTCGCACCCCGTCCAACCCGTCTCCTCCCCCCCTCAA
TGCCCCCCCGCCCCCCTTCAGGTGGAAGGTAACGCCTTAGATCGATCAAG
AGGCCGCATCTTTTGTCGCCACCACAGTCGAATATCACCTCCGCGAGATA
TTGGAGGACGCGATCAAACTGCAAAATCAAAGCAAACGCCATTCCTTGAC
GGTCGATGACCTGAATTTCGTCATGCGCCTCCGTGGGCAACAGCCTCTGT
ACGGCTACGGCGCCGGGGCGGCGGCAACACAGGAAGTGACGACAACGGAC
GGAGAGCAGGCCACGGTGGTCCTATCGGGCCTGGGAGAAAGAAAAGAGAC
GCTTGTGCGAGCCATGCAGACGGAGCTGCCCAAGATGGCTACGACGGGTC
CGGCTAAGAAGAGTAAGCGGACCCTCCCGGTCAGTAAGGTCCCCGTGCTC
GGGCCAACAGGACTCATCTCTCCCCAGGCTATACAAGCTGCGGCAAAAAA
ATTGGAACTCCCGGAGGTTCCCCGCGAAGTCGGGCTTCTTCTCCACTGGC
TCGCTGTGGATGGTGTGCAGCCTCGCACCCCGTCCAACCCGTCTCCTCCC
CCCCTCAATGCCCCCCCGCCCCCCTTCAGGTGGAAGGTAACGCCTTAGAT
CGATCAAGAGGCCGCATCTTTTGTCGCCACCACAGTCGAATATCACCTCC
GCGAGATATTGGAGGACGCGATCAAACTGCAAAATCAAAGCAAACGCCAT
TCCTTGACGGTCGATGACCTGAATTTCGTCATGCGCCTCCGTGGGCAACA
GCCTCTGTACGGCTACGGCGCCGGGGCGGCGGCAACACAGGAAGTGACGA
CAACGGACGGAGAGCAGGCCACGGTGGTCCTATCGGGCCTGGGAGAAAGA
AAAGAGACGCTTGTGCGAGCCATGCAGACGGAGCTGCCCAAGATGGCTAC
GACGGGTCCGGCTAAGAAGAGTAAGCGGACCCTCCCGGTCAGTAAGGTCC
CCGTGCTCGGGCCAACAGGACTCATCTCTCCCCAGGCTATACAAGCTGCG
GCAAAAAAATTGGAACTCCCGGAG back to top
|