EWM27470.1, cds3195 (CDS) Nannochloropsis gaditana

Overview
NameEWM27470.1
Unique Namecds3195
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:993323..993454 -
Alignment locationCM002460.1:992874..993167 -
Alignment locationCM002460.1:992522..992653 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27470.1
Producttata-binding protein-associated-factor
Orig transcript idgnl|cribi|Naga_100174g7.7285.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:993323..993454 -
CM002460.1supercontigCM002460.1:992874..993167 -
CM002460.1supercontigCM002460.1:992522..992653 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006352DNA-templated transcription, initiation
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR004823TAF_TATA-bd
Homology
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|585109731|gb|EWM27470.1| (tata-binding protein-associated-factor [Nannochloropsis gaditana])

HSP 1 Score: 372.474 bits (955), Expect = 1.871e-130
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP 185
            MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP
Sbjct:    1 MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP 185          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|693497294|emb|CEG00035.1| (TATA box binding protein associated factor (TAF) [Ostreococcus tauri])

HSP 1 Score: 110.153 bits (274), Expect = 8.549e-25
Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 0
Query:    7 AKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSP---------PPLNAPPPPFR 180
            +KK  RT P S   V+ P    +P ++ A A  +  P    EAA  +A+ VEY LR I++DAIK+    KR +L  +D+N  ++LR  +PLYG+G G ++ Q   T +  +       L ER+  +   +   LP+ P +V L+ HWLAV+GVQP  P NP P         PPL +  P  R
Sbjct:    5 SKKFPRT-PHSATRVMAPASTYAPASVVAVADTIGAPRPSDEAAKALASDVEYRLRTIIQDAIKIMRHCKRETLRAEDVNAALKLRNCEPLYGFGTGTSSVQYKRTKEDPEVFY----LDEREIDVRELITKRLPRPPVDVNLVPHWLAVEGVQPMIPENPMPLAPEPKPLQPPLGSKRPRAR 182          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|1199291071|gb|OUS46165.1| (hypothetical protein BE221DRAFT_95380 [Ostreococcus tauri])

HSP 1 Score: 105.916 bits (263), Expect = 2.694e-23
Identity = 60/168 (35.71%), Postives = 89/168 (52.98%), Query Frame = 0
Query:   22 LGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSP---------PPLNAPPPPFR 180
            + P    +P ++ A A  +  P    EAA  +A+ VEY LR I++DAIK+    KR +L  +D+N  ++LR  +PLYG+G G ++ Q   T +  +       L ER+  +   +   LP+ P +V L+ HWLAV+GVQP  P NP P         PPL +  P  R
Sbjct:    1 MAPASTYAPASVVAVADTIGAPRPSDEAAKALASDVEYRLRTIIQDAIKIMRHCKRETLRAEDVNAALKLRNCEPLYGFGTGTSSVQYKRTKEDPEVFY----LDEREIDVRELITKRLPRPPVDVNLVPHWLAVEGVQPMIPENPMPLAPEPKPLQPPLGSKRPRAR 164          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|145353498|ref|XP_001421048.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144581284|gb|ABO99341.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 103.219 bits (256), Expect = 9.217e-23
Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = 0
Query:   31 QAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPP---PLNAPPP 177
             +++A A  +  P +D +AA  +A+  EY LR++ +DA+K    SKR +L+ +D+N  +RLR  +PLYG+GAG +  +   T +      V     + +E L R    +LP+ P EV L+ HWLAV+GVQP  P NP  P   P+   PP
Sbjct:   10 DSVRAIAATIGAPPVDADAARALASDCEYRLRQVFQDAMKCMRASKRTTLSAEDVNAALRLRNCEPLYGFGAGTSDYEYKQTREDPDVFYVEDREIDMRELLTR----KLPRPPIEVNLVPHWLAVEGVQPMIPENPMVPAAEPVAIEPP 155          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|1183479422|gb|ORZ03261.1| (hypothetical protein BCR43DRAFT_520436 [Syncephalastrum racemosum])

HSP 1 Score: 100.523 bits (249), Expect = 1.510e-21
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 0
Query:   33 IQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTE-LPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVT 184
            I+   + L +  +  E AS +A  VEY + E++++A K    SKR+ LTVDD+N  +R++  +PLYGY  G A     TT +      V     E KE    A+ +  LPK+P +V    HWLA++GVQP  P NP+P    A     R KV 
Sbjct:    9 IKNIGESLGVANLKDEVASALAQDVEYRVHELIQEAAKFMRHSKRNQLTVDDINAALRVKNVEPLYGYACGDAPKYRKTTVNASDLYFV-----EDKELDFDAILSRPLPKIPLDVSFTAHWLAIEGVQPAIPQNPTPGDAKADLLHKRSKVN 156          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|953442741|ref|XP_014564923.1| (hypothetical protein L969DRAFT_106010 [Mixia osmundae IAM 14324] >gi|358056098|dbj|GAA97952.1| hypothetical protein E5Q_04632 [Mixia osmundae IAM 14324] >gi|658161636|gb|KEI36359.1| hypothetical protein L969DRAFT_106010 [Mixia osmundae IAM 14324])

HSP 1 Score: 99.7525 bits (247), Expect = 3.334e-21
Identity = 54/160 (33.75%), Postives = 87/160 (54.37%), Query Frame = 0
Query:   20 PVLGPTGLISP-QAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPP 178
            P  GP+  + P  +++  A+   +  +  E A+ +AT VEY L E++E+++K    +KR  L VDD+++ ++ R  +PLYG+          TTT    AT  +  + + +  L R +  +LP  PR+V    HWLA++GVQP  P NPSP  + A   P
Sbjct:    3 PARGPSSSVWPADSVKDVAESCGIANLSDEVAAALATDVEYRLHELVEESLKFMRHAKRTKLRVDDIDYALKARNVEPLYGFRTNTPLAFRKTTT----ATGTVYYVEDEEIDLNRILHAQLPPAPRDVSYTAHWLAIEGVQPAIPQNPSPAEIRALQTP 158          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|1034745867|gb|OAV99851.1| (hypothetical protein PTTG_12709 [Puccinia triticina 1-1 BBBD Race 1])

HSP 1 Score: 99.7525 bits (247), Expect = 3.445e-21
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 0
Query:   25 TGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPP 176
            TG+    +++  A+ L L  +  EAA+ +A  VE+ L +++ED+IK    SKR +L V+D+++ +R +  +PL+G+ +    +   TT+    A   L  + E +  L + +  ELP VP+E     HWLAV+GVQP  P NP+P  L + P
Sbjct:    8 TGVWPKTSVKDVAESLGLANLSDEAATALAADVEFRLTQLIEDSIKFMRHSKRTNLLVEDVDYALRAKNIEPLWGFASTDTLSFRRTTS----AVGNLYFIDEEEIDLTKVLAAELPPVPQETSYTAHWLAVEGVQPAIPQNPTPAELKSHP 155          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|459365970|gb|EMG45455.1| (hypothetical protein G210_4359 [Candida maltosa Xu316])

HSP 1 Score: 99.7525 bits (247), Expect = 3.759e-21
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 0
Query:   45 IDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGY-GAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFR 180
            I  E A  +A  VEYH+ EI+E A+K    SKR  LT  D+++ +++   +PLYGY  A     +E     G Q    L  + + +    + +  ELPKVPR+V    HWLA++GVQP  P NP P  +   PP  R
Sbjct:   29 ISDETAKSLAMDVEYHIHEIIETAVKFMKHSKRKQLTTSDISYALKILNIEPLYGYDNAQPLNYKETMVGAGGQT---LYYVDDHEIEFEKLINQELPKVPRQVNFTAHWLAIEGVQPMVPQNPLPSEIKNLPPSVR 162          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|575510975|ref|XP_006684758.1| (DUF1546-domain-containing protein [[Candida] tenuis ATCC 10573] >gi|575510977|ref|XP_006684759.1| hypothetical protein CANTEDRAFT_112664 [[Candida] tenuis ATCC 10573] >gi|344234314|gb|EGV66184.1| DUF1546-domain-containing protein [[Candida] tenuis ATCC 10573] >gi|344234315|gb|EGV66185.1| hypothetical protein CANTEDRAFT_112664 [[Candida] tenuis ATCC 10573])

HSP 1 Score: 98.9821 bits (245), Expect = 5.830e-21
Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = 0
Query:   17 SKVPVLGPTGLISPQ-AIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGA-AATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFR 180
            SK+P+     L SP   ++ AA+ L +  + +E+A  +A  VEY + EILE AIK   +SKR  LT  D+N  +++   +PLYGY        +E     G Q    L  + +++  L + +  ELPKVPR+     HWLA++GVQP  P NPSP  + + PP  R
Sbjct:    5 SKIPL--SHSLWSPHDTVKDAAESLGI-NLTEESAKNLAMDVEYRIHEILETAIKFMRRSKRKLLTTGDINHSLKVLNIEPLYGYDNSQPLQFKEALVAAGGQT---LYYIDDQEIELEKLINQELPKVPRQTTFTAHWLAIEGVQPIIPQNPSPAEIKSLPPAIR 164          
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|330846367|ref|XP_003295007.1| (TATA-binding protein-associated-factor [Dictyostelium purpureum] >gi|325074402|gb|EGC28467.1| TATA-binding protein-associated-factor [Dictyostelium purpureum])

HSP 1 Score: 98.9821 bits (245), Expect = 6.032e-21
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   33 IQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSP 169
            I+  A+   +  +  E AS +A+ VEY +REI ++AIK    SKR  L+ DD+N  + L+  + LYGY +  +    +       +T  +  L +++ T    M   LPKVPRE  L  HWLA++GVQP  P NPSP
Sbjct:    9 IKIIAESAGISNLPDEIASQLASDVEYRIREIAQEAIKFMKHSKRDHLSCDDINNALGLKNVEVLYGYNSCVSDNSLLKFQKTTTSTQAIYYLNDKELTFQEVMNQPLPKVPREPTLSAHWLALEGVQPLIPQNPSP 145          
The following BLAST results are available for this feature:
BLAST of EWM27470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109731|gb|EWM27470.1|1.871e-130100.00tata-binding protein-associated-factor [Nannochlor... [more]
gi|693497294|emb|CEG00035.1|8.549e-2536.61TATA box binding protein associated factor (TAF) [... [more]
gi|1199291071|gb|OUS46165.1|2.694e-2335.71hypothetical protein BE221DRAFT_95380 [Ostreococcu... [more]
gi|145353498|ref|XP_001421048.1|9.217e-2338.00predicted protein, partial [Ostreococcus lucimarin... [more]
gi|1183479422|gb|ORZ03261.1|1.510e-2137.25hypothetical protein BCR43DRAFT_520436 [Syncephala... [more]
gi|953442741|ref|XP_014564923.1|3.334e-2133.75hypothetical protein L969DRAFT_106010 [Mixia osmun... [more]
gi|1034745867|gb|OAV99851.1|3.445e-2134.87hypothetical protein PTTG_12709 [Puccinia triticin... [more]
gi|459365970|gb|EMG45455.1|3.759e-2137.96hypothetical protein G210_4359 [Candida maltosa Xu... [more]
gi|575510975|ref|XP_006684758.1|5.830e-2137.35DUF1546-domain-containing protein [[Candida] tenui... [more]
gi|330846367|ref|XP_003295007.1|6.032e-2137.96TATA-binding protein-associated-factor [Dictyostel... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3203rna3203Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications