EWM27470.1, cds3195 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|585109731|gb|EWM27470.1| (tata-binding protein-associated-factor [Nannochloropsis gaditana]) HSP 1 Score: 372.474 bits (955), Expect = 1.871e-130 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query: 1 MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP 185
MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP
Sbjct: 1 MATTGPAKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVTP 185
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|693497294|emb|CEG00035.1| (TATA box binding protein associated factor (TAF) [Ostreococcus tauri]) HSP 1 Score: 110.153 bits (274), Expect = 8.549e-25 Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 0
Query: 7 AKKSKRTLPVSKVPVLGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSP---------PPLNAPPPPFR 180
+KK RT P S V+ P +P ++ A A + P EAA +A+ VEY LR I++DAIK+ KR +L +D+N ++LR +PLYG+G G ++ Q T + + L ER+ + + LP+ P +V L+ HWLAV+GVQP P NP P PPL + P R
Sbjct: 5 SKKFPRT-PHSATRVMAPASTYAPASVVAVADTIGAPRPSDEAAKALASDVEYRLRTIIQDAIKIMRHCKRETLRAEDVNAALKLRNCEPLYGFGTGTSSVQYKRTKEDPEVFY----LDEREIDVRELITKRLPRPPVDVNLVPHWLAVEGVQPMIPENPMPLAPEPKPLQPPLGSKRPRAR 182
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|1199291071|gb|OUS46165.1| (hypothetical protein BE221DRAFT_95380 [Ostreococcus tauri]) HSP 1 Score: 105.916 bits (263), Expect = 2.694e-23 Identity = 60/168 (35.71%), Postives = 89/168 (52.98%), Query Frame = 0
Query: 22 LGPTGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSP---------PPLNAPPPPFR 180
+ P +P ++ A A + P EAA +A+ VEY LR I++DAIK+ KR +L +D+N ++LR +PLYG+G G ++ Q T + + L ER+ + + LP+ P +V L+ HWLAV+GVQP P NP P PPL + P R
Sbjct: 1 MAPASTYAPASVVAVADTIGAPRPSDEAAKALASDVEYRLRTIIQDAIKIMRHCKRETLRAEDVNAALKLRNCEPLYGFGTGTSSVQYKRTKEDPEVFY----LDEREIDVRELITKRLPRPPVDVNLVPHWLAVEGVQPMIPENPMPLAPEPKPLQPPLGSKRPRAR 164
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|145353498|ref|XP_001421048.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144581284|gb|ABO99341.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 103.219 bits (256), Expect = 9.217e-23 Identity = 57/150 (38.00%), Postives = 86/150 (57.33%), Query Frame = 0
Query: 31 QAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPP---PLNAPPP 177
+++A A + P +D +AA +A+ EY LR++ +DA+K SKR +L+ +D+N +RLR +PLYG+GAG + + T + V + +E L R +LP+ P EV L+ HWLAV+GVQP P NP P P+ PP
Sbjct: 10 DSVRAIAATIGAPPVDADAARALASDCEYRLRQVFQDAMKCMRASKRTTLSAEDVNAALRLRNCEPLYGFGAGTSDYEYKQTREDPDVFYVEDREIDMRELLTR----KLPRPPIEVNLVPHWLAVEGVQPMIPENPMVPAAEPVAIEPP 155
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|1183479422|gb|ORZ03261.1| (hypothetical protein BCR43DRAFT_520436 [Syncephalastrum racemosum]) HSP 1 Score: 100.523 bits (249), Expect = 1.510e-21 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 0
Query: 33 IQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTE-LPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFRWKVT 184
I+ + L + + E AS +A VEY + E++++A K SKR+ LTVDD+N +R++ +PLYGY G A TT + V E KE A+ + LPK+P +V HWLA++GVQP P NP+P A R KV
Sbjct: 9 IKNIGESLGVANLKDEVASALAQDVEYRVHELIQEAAKFMRHSKRNQLTVDDINAALRVKNVEPLYGYACGDAPKYRKTTVNASDLYFV-----EDKELDFDAILSRPLPKIPLDVSFTAHWLAIEGVQPAIPQNPTPGDAKADLLHKRSKVN 156
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|953442741|ref|XP_014564923.1| (hypothetical protein L969DRAFT_106010 [Mixia osmundae IAM 14324] >gi|358056098|dbj|GAA97952.1| hypothetical protein E5Q_04632 [Mixia osmundae IAM 14324] >gi|658161636|gb|KEI36359.1| hypothetical protein L969DRAFT_106010 [Mixia osmundae IAM 14324]) HSP 1 Score: 99.7525 bits (247), Expect = 3.334e-21 Identity = 54/160 (33.75%), Postives = 87/160 (54.37%), Query Frame = 0
Query: 20 PVLGPTGLISP-QAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPP 178
P GP+ + P +++ A+ + + E A+ +AT VEY L E++E+++K +KR L VDD+++ ++ R +PLYG+ TTT AT + + + + L R + +LP PR+V HWLA++GVQP P NPSP + A P
Sbjct: 3 PARGPSSSVWPADSVKDVAESCGIANLSDEVAAALATDVEYRLHELVEESLKFMRHAKRTKLRVDDIDYALKARNVEPLYGFRTNTPLAFRKTTT----ATGTVYYVEDEEIDLNRILHAQLPPAPRDVSYTAHWLAIEGVQPAIPQNPSPAEIRALQTP 158
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|1034745867|gb|OAV99851.1| (hypothetical protein PTTG_12709 [Puccinia triticina 1-1 BBBD Race 1]) HSP 1 Score: 99.7525 bits (247), Expect = 3.445e-21 Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 0
Query: 25 TGLISPQAIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPP 176
TG+ +++ A+ L L + EAA+ +A VE+ L +++ED+IK SKR +L V+D+++ +R + +PL+G+ + + TT+ A L + E + L + + ELP VP+E HWLAV+GVQP P NP+P L + P
Sbjct: 8 TGVWPKTSVKDVAESLGLANLSDEAATALAADVEFRLTQLIEDSIKFMRHSKRTNLLVEDVDYALRAKNIEPLWGFASTDTLSFRRTTS----AVGNLYFIDEEEIDLTKVLAAELPPVPQETSYTAHWLAVEGVQPAIPQNPTPAELKSHP 155
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|459365970|gb|EMG45455.1| (hypothetical protein G210_4359 [Candida maltosa Xu316]) HSP 1 Score: 99.7525 bits (247), Expect = 3.759e-21 Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 0
Query: 45 IDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGY-GAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFR 180
I E A +A VEYH+ EI+E A+K SKR LT D+++ +++ +PLYGY A +E G Q L + + + + + ELPKVPR+V HWLA++GVQP P NP P + PP R
Sbjct: 29 ISDETAKSLAMDVEYHIHEIIETAVKFMKHSKRKQLTTSDISYALKILNIEPLYGYDNAQPLNYKETMVGAGGQT---LYYVDDHEIEFEKLINQELPKVPRQVNFTAHWLAIEGVQPMVPQNPLPSEIKNLPPSVR 162
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|575510975|ref|XP_006684758.1| (DUF1546-domain-containing protein [[Candida] tenuis ATCC 10573] >gi|575510977|ref|XP_006684759.1| hypothetical protein CANTEDRAFT_112664 [[Candida] tenuis ATCC 10573] >gi|344234314|gb|EGV66184.1| DUF1546-domain-containing protein [[Candida] tenuis ATCC 10573] >gi|344234315|gb|EGV66185.1| hypothetical protein CANTEDRAFT_112664 [[Candida] tenuis ATCC 10573]) HSP 1 Score: 98.9821 bits (245), Expect = 5.830e-21 Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = 0
Query: 17 SKVPVLGPTGLISPQ-AIQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGA-AATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSPPPLNAPPPPFR 180
SK+P+ L SP ++ AA+ L + + +E+A +A VEY + EILE AIK +SKR LT D+N +++ +PLYGY +E G Q L + +++ L + + ELPKVPR+ HWLA++GVQP P NPSP + + PP R
Sbjct: 5 SKIPL--SHSLWSPHDTVKDAAESLGI-NLTEESAKNLAMDVEYRIHEILETAIKFMRRSKRKLLTTGDINHSLKVLNIEPLYGYDNSQPLQFKEALVAAGGQT---LYYIDDQEIELEKLINQELPKVPRQTTFTAHWLAIEGVQPIIPQNPSPAEIKSLPPAIR 164
BLAST of EWM27470.1 vs. NCBI_GenBank
Match: gi|330846367|ref|XP_003295007.1| (TATA-binding protein-associated-factor [Dictyostelium purpureum] >gi|325074402|gb|EGC28467.1| TATA-binding protein-associated-factor [Dictyostelium purpureum]) HSP 1 Score: 98.9821 bits (245), Expect = 6.032e-21 Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 0
Query: 33 IQAAAKKLELPEIDQEAASFVATTVEYHLREILEDAIKLQNQSKRHSLTVDDLNFVMRLRGQQPLYGYGAGAAATQEVTTTDGEQATVVLSGLGERKETLVRAMQTELPKVPREVGLLLHWLAVDGVQPRTPSNPSP 169
I+ A+ + + E AS +A+ VEY +REI ++AIK SKR L+ DD+N + L+ + LYGY + + + +T + L +++ T M LPKVPRE L HWLA++GVQP P NPSP
Sbjct: 9 IKIIAESAGISNLPDEIASQLASDVEYRIREIAQEAIKFMKHSKRDHLSCDDINNALGLKNVEVLYGYNSCVSDNSLLKFQKTTTSTQAIYYLNDKELTFQEVMNQPLPKVPREPTLSAHWLALEGVQPLIPQNPSP 145 The following BLAST results are available for this feature:
BLAST of EWM27470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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