rna3202, rna3202 (mRNA) Nannochloropsis gaditana

Overview
Namerna3202
Unique Namerna3202
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1336
Alignment locationCM002460.1:991482..992450 -

Link to JBrowse

Properties
Property NameValue
Producttranscription initiation factor tfiid subunit
Orig transcript idgnl|cribi|Naga_100174g6.7291.mrna
Orig protein idgnl|cribi|Naga_100174g6.7291
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:991482..992450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100174g6gene3080Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27476.1cds3194Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3202rna3202-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3202 ID=rna3202|Name=rna3202|organism=Nannochloropsis gaditana|type=mRNA|length=1336bp
TATTTGCAATCTCAATTGGAATCTGCATGCAAACCTGGGCGTGTTTGGTT
ATGCACGTCATCTGCTCGTCGTGAGCGACGTGCGTGTACCTCTTGTCGTA
CAGGTCGCAAATGGAAGACATTCGTGCCATGACAGTGGTCTCGCCATCAT
GTCCTACCCCGTCATCACCGTCCCACCGCGCATCCGTCCACCCAATAATC
GCTTTCACTCCATCTCCCCAAGCAGGAGTAGACCCGACGAATCATGAGAA
ATCTCTGCTGCAATGTTGCATTTTTAATGCTTGGCTTGTTCATCGGCCAG
AGTGGAGCTTTTTTGAGCCCTCTACCTTCCCAAAAGCTCCTGTCTACGTC
ATCCCTCTCTCGGACTCGTCATGCGCACTCCTTGGTTACGGGGTTGGATG
TGACCTCGACACTGGACATCTTGCAGCACACCGGAAATACACTTTTGGCG
TACACAGACGACACAAAGCCGACTCTGAACGCTGAGATCATCGGTGTCAG
CTCCATTGGTGTCTTTGCTGGTCTTGCGGGCATCTTTGCGTTGCTGACCA
AGAACTTGAAGAACAAAAACTTTGCCTTCACCCTTTCTGAAGACGAGCAA
GCGGCAGTGGATGCAGTGGAAGCTTTGTATGATCCTAAGGAGGAGGATTT
GGCTCTAACTGAGGCTGGCACGGTGGGGTTTGTCAGGAGAAAGCAGCTTG
CCGAGAAGGCGAAGGAATCGTACCAACAGGGGAGGGATGACCGCGAGGTG
CGCGACAAGACGCTTTACTACGCAGAAATCGATTTAGCCTTCTTGGCAGT
CTTGCTCGGAGCAGCGAATCCATCTGGAAGCGGGGTATTCTATGACCTAG
GATCGGGCGTGGGACGGGCAGTCCTGGGAGCCGCCAAGCTCGCACGGTGG
AAGAAAGCCATCGGAGTAGAATACCTTGGAGGTTTACATAAAGAGGCGAT
CAAATACGAAGGGAAGTTCAAGCGATTGAGGGGATCCCCAACTCAATTTG
TCAACAAAGATTTCGTAGACGTCGACTTGTCGGATGCGGAGGTCGTGTTC
ATTTATGCCACTAAATATTCGAGGGACATCGACGACGTTTTGGCCACAGC
GCCAGTAGGTGCTCGCATCATCAGTTTGGATCGACGTCTGAACGCACGAC
AATATAAGTTGCTGAAGACAATTGAGGACCCCAGGGGGGATTTGCAGCTA
GTGTTCGGATACGTGTATGAAAAGACGGCGTAAATTGATCACAGAGTGCA
GGAGATCGGGACGTGTGGGAACCGCAACAAAGTTTTTCTAACACACAAGG
TCAAAGAATTGATTGGTTTTACCAAGACAAACATAA
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protein sequence of rna3202

>rna3202-protein ID=rna3202-protein|Name=rna3202|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSL
DPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAG
LAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKY
SGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKP
VEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEARER
EVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRI
GAEAFLPYAAQSLCYPELLLVL
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mRNA from alignment at CM002460.1:991482..992450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3202 ID=rna3202|Name=rna3202|organism=Nannochloropsis gaditana|type=mRNA|length=969bp|location=Sequence derived from alignment at CM002460.1:991482..992450- (Nannochloropsis gaditana)
ATGTCCCCCGCCACGCCCGAAGCGGAGCGTCGGGCCTACTACGTGGGTGT
GGGCACGGAAACGGGGCTGCACGAGCTTGTCCCCTACCTCTCCCTCCACA
TCCACAACACGGTCACGGCCGCGGTCGGGGCGGGGGGCCGGGGCTCGCTC
GATCCGCTCTGGGCTGTCATGCGCGTGTTTCGCTGCATGGTGGTGAACCC
GCACATGCACCTAGACCTGTATTTGCACCAAATGCTTCCAGGCGTGATGA
CCGTGATCGCCAACAACCGGCTGGGTTCCCATGGCGAAGGCGTCGCGGGC
CTGGCTGCGTCCAAAGAGACGAAGGGAGGGAGGGGGGCAGACTGGAAGGC
GGGCAACGGGTGGGGACAGACGGGGGGAGACGGGGCGGGCGACCACTATG
CCTTGCGGTCTTTCGCCGCCCAGACCCTGGCCATGCTCGTGAGGAAGTAC
TCGGGTGTTTACCGTCCATTGGCTTCGGTAATCTGCAAGACGTTTGCAGA
GCGGGTGGACGAATTTTTGAGCGTCGAACCTCCTGACAAGGGAGCCTTGG
CTACGCTGTATGGGACCATCGTAGGCATTCGGCATCTAGGGGTAAAGCCA
GTCGAGGTGGTCCTGATCCCCGTGGCTGGGCAGCTGCTAGAGCGGCTGAA
AGGGATCATGGAAGATCGAGGCGTGAAGTTGAGGAAGAGAATGGAGGCAC
AACATTGCTATACTGCCCTGGTTCCGGCAGTGGGCGAAGCGAGGGAGAGA
GAAGTGAAAAAGACTTTGAGCGCCGAGAGGGTCGTGTCTTTCGGAGAGGT
GGGGGTTGAAGTCGAGTTAAATGGAGAAAAGAATGAGGGCGGGAGGGACG
GAAAGACGACAGGACTAGGAATAACAGGAGAACAGTGGGAAGGACGTATC
GGGGCAGAGGCATTCCTGCCCTACGCAGCGCAAAGCTTGTGCTATCCTGA
ACTTCTTCTGGTTTTGTAG
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Coding sequence (CDS) from alignment at CM002460.1:991482..992450-

>rna3202 ID=rna3202|Name=rna3202|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at CM002460.1:991482..992450- (Nannochloropsis gaditana)
ATGTCCCCCGCCACGCCCGAAGCGGAGCGTCGGGCCTACTACGTGGGTGT
GGGCACGGAAACGGGGCTGCACGAGCTTGTCCCCTACCTCTCCCTCCACA
TCCACAACACGGTCACGGCCGCGGTCGGGGCGGGGGGCCGGGGCTCGCTC
GATCCGCTCTGGGCTGTCATGCGCGTGTTTCGCTGCATGGTGGTGAACCC
GCACATGCACCTAGACCTGTATTTGCACCAAATGCTTCCAGGCGTGATGA
CCGTGATCGCCAACAACCGGCTGGGTTCCCATGGCGAAGGCGTCGCGGGC
CTGGCTGCGTCCAAAGAGACGAAGGGAGGGAGGGGGGCAGACTGGAAGGC
GGGCAACGGGTGGGGACAGACGGGGGGAGACGGGGCGGGCGACCACTATG
CCTTGCGGTCTTTCGCCGCCCAGACCCTGGCCATGCTCGTGAGGAAGTAC
TCGGGTGTTTACCGTCCATTGGCTTCGGTAATCTGCAAGACGTTTGCAGA
GCGGGTGGACGAATTTTTGAGCGTCGAACCTCCTGACAAGGGAGCCTTGG
CTACGCTGTATGGGACCATCGTAGGCATTCGGCATCTAGGGGTAAAGCCA
GTCGAGGTGGTCCTGATCCCCGTGGCTGGGCAGCTGCTAGAGCGGCTGAA
AGGGATCATGGAAGATCGAGGCGTGAAGTTGAGGAAGAGAATGGAGGCAC
AACATTGCTATACTGCCCTGGTTCCGGCAGTGGGCGAAGCGAGGGAGAGA
GAAGTGAAAAAGACTTTGAGCGCCGAGAGGGTCGTGTCTTTCGGAGAGGT
GGGGGTTGAAGTCGAGTTAAATGGAGAAAAGAATGAGGGCGGGAGGGACG
GAAAGACGACAGGACTAGGAATAACAGGAGAACAGTGGGAAGGACGTATC
GGGGCAGAGGCATTCCTGCCCTACGCAGCGCAAAGCTTGTGCTATCCTGA
ACTTCTTCTGGTTTTGTAG
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Synonyms
Publications