EWM27476.1, cds3194 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|585109737|gb|EWM27476.1| (transcription initiation factor tfiid subunit [Nannochloropsis gaditana]) HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0 Query: 1 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL 322 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL Sbjct: 1 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL 322
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|1102692414|gb|OIV92001.1| (hypothetical protein TanjilG_07740 [Lupinus angustifolius]) HSP 1 Score: 104.375 bits (259), Expect = 2.839e-21 Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 0 Query: 10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254 RRA V + T++GLH LVPYLS + + V A +L L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I R+G+ R +D H+ LRSF+A +A + +++ VY L + KTF + FL P K +L YG I GI LG + V ++IP L L+ M+ ++ KR A Y AL+ AVG+ ++VK+ Sbjct: 193 RRAL-VSLATDSGLHPLVPYLSRFVADEV-----AQNLNNLPLLFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGN-----------------RLSD----------------THWELRSFSANIVASICKRFGHVYHNLQPRVTKTF---LHAFLD---PTK-SLPQHYGAIKGIAALGSRMVRSLIIPNLEPYLHLLEPEMQLEKQKNEIKRHAACQVYGALLCAVGQCMHKKVKE 392
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|1117466560|ref|XP_019425907.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Lupinus angustifolius]) HSP 1 Score: 103.99 bits (258), Expect = 3.194e-21 Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 0 Query: 10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254 RRA V + T++GLH LVPYLS + + V A +L L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I R+G+ R +D H+ LRSF+A +A + +++ VY L + KTF + FL P K +L YG I GI LG + V ++IP L L+ M+ ++ KR A Y AL+ AVG+ ++VK+ Sbjct: 181 RRAL-VSLATDSGLHPLVPYLSRFVADEV-----AQNLNNLPLLFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGN-----------------RLSD----------------THWELRSFSANIVASICKRFGHVYHNLQPRVTKTF---LHAFLD---PTK-SLPQHYGAIKGIAALGSRMVRSLIIPNLEPYLHLLEPEMQLEKQKNEIKRHAACQVYGALLCAVGQCMHKKVKE 380
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|1117466558|ref|XP_019425906.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Lupinus angustifolius]) HSP 1 Score: 103.99 bits (258), Expect = 3.404e-21 Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 0 Query: 10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254 RRA V + T++GLH LVPYLS + + V A +L L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I R+G+ R +D H+ LRSF+A +A + +++ VY L + KTF + FL P K +L YG I GI LG + V ++IP L L+ M+ ++ KR A Y AL+ AVG+ ++VK+ Sbjct: 193 RRAL-VSLATDSGLHPLVPYLSRFVADEV-----AQNLNNLPLLFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGN-----------------RLSD----------------THWELRSFSANIVASICKRFGHVYHNLQPRVTKTF---LHAFLD---PTK-SLPQHYGAIKGIAALGSRMVRSLIIPNLEPYLHLLEPEMQLEKQKNEIKRHAACQVYGALLCAVGQCMHKKVKE 392
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|698808084|ref|XP_009837071.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574108136|gb|ETV73645.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 101.679 bits (252), Expect = 4.289e-21 Identity = 72/256 (28.12%), Postives = 116/256 (45.31%), Query Frame = 0 Query: 8 AERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKK----TLSAE 259 A + A Y + + GLH+L+PY S I++ V + L L A++R+ RC++ N + ++LYL Q++P ++T + N +L + A DH+A+R AAQ +A + ++ G Y L + KT+ E FL P + YG IVG +LG +E +L P L RL+ +M + L +R+EA HC L A G+ + ++ TLS E Sbjct: 76 ARQHAAYASLTKDPGLHQLLPYFSKFIYDEV-----KHSQRDLTLLTAILRMARCLLSNSSLRIELYLEQLIPSILTCVLNRQLCE---------------------------------NPADDHWAVRKSAAQLMAQICHRFGGSYESLQLRVSKTYHE---AFLDPTRP----FTSQYGAIVGCLYLGPLVMESLLFPHVATYLARLEPVMSPQNPNLVQRLEALHCVGILEQAAGQYLSQHIQPGQHATLSRE 286
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|635371071|emb|CCI40727.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 103.219 bits (256), Expect = 5.325e-21 Identity = 65/236 (27.54%), Postives = 115/236 (48.73%), Query Frame = 0 Query: 10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVG 245 +RA + + + G+ +L+PY+S ++ V + + ++ L ++MRV RC++VNPH+ ++LYLHQ+LP +++ + ++L + A +H+ALR AAQ +A + +KY Y L + + KT+ L++ P +T YG I G+ +LG +E +L P +RL+ + L +R+EAQ+C LV A G Sbjct: 196 QRAAFHSISQDPGMRQLLPYVSRFVYQEVKSVKNSNRDLAI--LVSLMRVCRCLLVNPHLRIELYLHQLLPALLSCVLGHQLCE---------------------------------NAAENHWALRDHAAQLIATICKKYGETYAKLQARVSKTY------HLAISDP-HCPFSTQYGAINGLMYLGPLVMEKLLFPNLPMYYKRLEPALNSSNPDLIQRLEAQNCLGTLVHASG 389
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|325179833|emb|CCA14236.1| (transcription initiation factor TFIID subunit 6 puta [Albugo laibachii Nc14]) HSP 1 Score: 102.834 bits (255), Expect = 6.298e-21 Identity = 66/236 (27.97%), Postives = 112/236 (47.46%), Query Frame = 0 Query: 10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVG 245 +RA + + + G+ +L+PY+S ++ V L L ++MRV RC++VNPH+ ++LYLHQ+LP +++ + ++L + A +H+ALR AAQ +A + +KY Y L + + KT+ L++ P +T YG I G+ +LG +E +L P +RL+ + L +R+EAQ+C LV A G Sbjct: 198 QRAAFHSISQDPGMRQLLPYVSRFVYEEVK-----NSNRDLSILVSLMRVCRCLLVNPHLRIELYLHQLLPALLSCVLGHQLCE---------------------------------NAAENHWALRDHAAQLIATICKKYGETYEKLQARVSKTY------HLAISDP-HCPFSTQYGAINGLMYLGPLVMEKLLFPNLPMYYKRLEPALSSSNPDLIQRLEAQNCLGTLVHASG 388
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|672158099|ref|XP_008798778.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Phoenix dactylifera]) HSP 1 Score: 102.449 bits (254), Expect = 6.851e-21 Identity = 76/239 (31.80%), Postives = 116/239 (48.54%), Query Frame = 0 Query: 16 GVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVK 253 + T++GLH LVPY S I + VT ++ L L+A+MRV R ++ NPH+H++ YLHQ++P ++T I RLG R AD +H+ LR FAA +A + R++ VY L + +T ++ FL P K A+ YG I G+ LG V V+++P ++ L+ M+ ++ KR EA H Y AL+ A G+ VK Sbjct: 76 SLATDSGLHPLVPYFSYFIADEVTRSLN-----DLPLLFALMRVVRSLLRNPHIHIEPYLHQLMPSMITCIVAKRLGH-----------------RIAD----------------NHWELRDFAANLVASVCRRFGHVYHNLQYRLTRTL---LNAFLD---PSK-AMTQHYGAIQGLAALGPSVVRVLILPQLETYMQLLEPEMQLEKQKNEMKRKEAWHVYGALLCAAGKCLYERVK 269
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|778723605|ref|XP_004144526.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus] >gi|700188227|gb|KGN43460.1| hypothetical protein Csa_7G037630 [Cucumis sativus]) HSP 1 Score: 103.219 bits (256), Expect = 7.549e-21 Identity = 76/244 (31.15%), Postives = 119/244 (48.77%), Query Frame = 0 Query: 15 VGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGV-----KLRKRMEAQHCYTALVPAVGEAREREVK 253 V + T++GLH LVPY + +I + V A G G L+A+MRV ++ NPH+H++ YLHQM+P V+T + RLGS R +D +H+ LR F A+ +A++ +++ VY L + + KT ++ FL K +L YG I G+ LG+ V ++++P LE G++E + KR EA H Y AL+ AVG+ +K Sbjct: 199 VSLATDSGLHPLVPYFTCYIADEV-----ARGLGDYSLLFALMRVVWSLLQNPHIHIEPYLHQMMPSVVTCLVAKRLGS-----------------RFSD----------------NHWELRDFTAKVVALICKRFGHVYNTLQTKLTKTL---LNAFLD----PKRSLTQHYGAIRGLAALGMNVVHLLILPN----LEPYLGLLEPEMLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIK 393
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|357459811|ref|XP_003600186.1| (TATA-binding protein associated factor [Medicago truncatula] >gi|355489234|gb|AES70437.1| TATA-binding protein associated factor [Medicago truncatula]) HSP 1 Score: 103.219 bits (256), Expect = 7.619e-21 Identity = 78/248 (31.45%), Postives = 124/248 (50.00%), Query Frame = 0 Query: 10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAG---QLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254 RRA V + T++GLH LVPY + + + V A +L+ L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I R+ G R +D +H+ LR F+A +A++ +++ +Y L + KTF + FL P K AL YG I GI LG + V ++++P LLE K + + + KR EA Y AL+ AVG+ +VK+ Sbjct: 193 RRAL-VTLATDSGLHPLVPYFTRFVADEV-----ARNLNNLNILFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRI-----------------GNRLSD----------------NHWELRDFSANLVALICKRFGHMYHNLQPRVTKTF---LHTFLD---PTK-ALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLEPEKQLEKQKNEI--KRQEAWQVYGALLCAVGQNMHEKVKR 392 The following BLAST results are available for this feature:
BLAST of EWM27476.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|