EWM27476.1, cds3194 (CDS) Nannochloropsis gaditana

Overview
NameEWM27476.1
Unique Namecds3194
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:991482..992450 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27476.1
Producttranscription initiation factor tfiid subunit
Orig transcript idgnl|cribi|Naga_100174g6.7291.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:991482..992450 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0006139nucleobase-containing compound metabolic process
GO:0051090regulation of DNA-binding transcription factor activity
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011442DUF1546
Homology
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|585109737|gb|EWM27476.1| (transcription initiation factor tfiid subunit [Nannochloropsis gaditana])

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL 322
            MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL
Sbjct:    1 MSPATPEAERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKKTLSAERVVSFGEVGVEVELNGEKNEGGRDGKTTGLGITGEQWEGRIGAEAFLPYAAQSLCYPELLLVL 322          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|1102692414|gb|OIV92001.1| (hypothetical protein TanjilG_07740 [Lupinus angustifolius])

HSP 1 Score: 104.375 bits (259), Expect = 2.839e-21
Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 0
Query:   10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254
            RRA  V + T++GLH LVPYLS  + + V     A    +L  L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I   R+G+                 R +D                 H+ LRSF+A  +A + +++  VY  L   + KTF   +  FL    P K +L   YG I GI  LG + V  ++IP     L  L+  M+ ++     KR  A   Y AL+ AVG+   ++VK+
Sbjct:  193 RRAL-VSLATDSGLHPLVPYLSRFVADEV-----AQNLNNLPLLFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGN-----------------RLSD----------------THWELRSFSANIVASICKRFGHVYHNLQPRVTKTF---LHAFLD---PTK-SLPQHYGAIKGIAALGSRMVRSLIIPNLEPYLHLLEPEMQLEKQKNEIKRHAACQVYGALLCAVGQCMHKKVKE 392          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|1117466560|ref|XP_019425907.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Lupinus angustifolius])

HSP 1 Score: 103.99 bits (258), Expect = 3.194e-21
Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 0
Query:   10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254
            RRA  V + T++GLH LVPYLS  + + V     A    +L  L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I   R+G+                 R +D                 H+ LRSF+A  +A + +++  VY  L   + KTF   +  FL    P K +L   YG I GI  LG + V  ++IP     L  L+  M+ ++     KR  A   Y AL+ AVG+   ++VK+
Sbjct:  181 RRAL-VSLATDSGLHPLVPYLSRFVADEV-----AQNLNNLPLLFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGN-----------------RLSD----------------THWELRSFSANIVASICKRFGHVYHNLQPRVTKTF---LHAFLD---PTK-SLPQHYGAIKGIAALGSRMVRSLIIPNLEPYLHLLEPEMQLEKQKNEIKRHAACQVYGALLCAVGQCMHKKVKE 380          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|1117466558|ref|XP_019425906.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Lupinus angustifolius])

HSP 1 Score: 103.99 bits (258), Expect = 3.404e-21
Identity = 80/246 (32.52%), Postives = 123/246 (50.00%), Query Frame = 0
Query:   10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254
            RRA  V + T++GLH LVPYLS  + + V     A    +L  L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I   R+G+                 R +D                 H+ LRSF+A  +A + +++  VY  L   + KTF   +  FL    P K +L   YG I GI  LG + V  ++IP     L  L+  M+ ++     KR  A   Y AL+ AVG+   ++VK+
Sbjct:  193 RRAL-VSLATDSGLHPLVPYLSRFVADEV-----AQNLNNLPLLFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGN-----------------RLSD----------------THWELRSFSANIVASICKRFGHVYHNLQPRVTKTF---LHAFLD---PTK-SLPQHYGAIKGIAALGSRMVRSLIIPNLEPYLHLLEPEMQLEKQKNEIKRHAACQVYGALLCAVGQCMHKKVKE 392          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|698808084|ref|XP_009837071.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574108136|gb|ETV73645.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 101.679 bits (252), Expect = 4.289e-21
Identity = 72/256 (28.12%), Postives = 116/256 (45.31%), Query Frame = 0
Query:    8 AERRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKK----TLSAE 259
            A + A Y  +  + GLH+L+PY S  I++ V        +  L  L A++R+ RC++ N  + ++LYL Q++P ++T + N +L                                   + A DH+A+R  AAQ +A +  ++ G Y  L   + KT+ E    FL    P      + YG IVG  +LG   +E +L P     L RL+ +M  +   L +R+EA HC   L  A G+   + ++     TLS E
Sbjct:   76 ARQHAAYASLTKDPGLHQLLPYFSKFIYDEV-----KHSQRDLTLLTAILRMARCLLSNSSLRIELYLEQLIPSILTCVLNRQLCE---------------------------------NPADDHWAVRKSAAQLMAQICHRFGGSYESLQLRVSKTYHE---AFLDPTRP----FTSQYGAIVGCLYLGPLVMESLLFPHVATYLARLEPVMSPQNPNLVQRLEALHCVGILEQAAGQYLSQHIQPGQHATLSRE 286          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|635371071|emb|CCI40727.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 103.219 bits (256), Expect = 5.325e-21
Identity = 65/236 (27.54%), Postives = 115/236 (48.73%), Query Frame = 0
Query:   10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVG 245
            +RA +  +  + G+ +L+PY+S  ++  V +   +    ++  L ++MRV RC++VNPH+ ++LYLHQ+LP +++ +  ++L                                   + A +H+ALR  AAQ +A + +KY   Y  L + + KT+       L++  P     +T YG I G+ +LG   +E +L P      +RL+  +      L +R+EAQ+C   LV A G
Sbjct:  196 QRAAFHSISQDPGMRQLLPYVSRFVYQEVKSVKNSNRDLAI--LVSLMRVCRCLLVNPHLRIELYLHQLLPALLSCVLGHQLCE---------------------------------NAAENHWALRDHAAQLIATICKKYGETYAKLQARVSKTY------HLAISDP-HCPFSTQYGAINGLMYLGPLVMEKLLFPNLPMYYKRLEPALNSSNPDLIQRLEAQNCLGTLVHASG 389          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|325179833|emb|CCA14236.1| (transcription initiation factor TFIID subunit 6 puta [Albugo laibachii Nc14])

HSP 1 Score: 102.834 bits (255), Expect = 6.298e-21
Identity = 66/236 (27.97%), Postives = 112/236 (47.46%), Query Frame = 0
Query:   10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVG 245
            +RA +  +  + G+ +L+PY+S  ++  V           L  L ++MRV RC++VNPH+ ++LYLHQ+LP +++ +  ++L                                   + A +H+ALR  AAQ +A + +KY   Y  L + + KT+       L++  P     +T YG I G+ +LG   +E +L P      +RL+  +      L +R+EAQ+C   LV A G
Sbjct:  198 QRAAFHSISQDPGMRQLLPYVSRFVYEEVK-----NSNRDLSILVSLMRVCRCLLVNPHLRIELYLHQLLPALLSCVLGHQLCE---------------------------------NAAENHWALRDHAAQLIATICKKYGETYEKLQARVSKTY------HLAISDP-HCPFSTQYGAINGLMYLGPLVMEKLLFPNLPMYYKRLEPALSSSNPDLIQRLEAQNCLGTLVHASG 388          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|672158099|ref|XP_008798778.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Phoenix dactylifera])

HSP 1 Score: 102.449 bits (254), Expect = 6.851e-21
Identity = 76/239 (31.80%), Postives = 116/239 (48.54%), Query Frame = 0
Query:   16 GVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIME-DRGVKLRKRMEAQHCYTALVPAVGEAREREVK 253
             + T++GLH LVPY S  I + VT ++       L  L+A+MRV R ++ NPH+H++ YLHQ++P ++T I   RLG                  R AD                +H+ LR FAA  +A + R++  VY  L   + +T    ++ FL    P K A+   YG I G+  LG   V V+++P     ++ L+  M+ ++     KR EA H Y AL+ A G+     VK
Sbjct:   76 SLATDSGLHPLVPYFSYFIADEVTRSLN-----DLPLLFALMRVVRSLLRNPHIHIEPYLHQLMPSMITCIVAKRLGH-----------------RIAD----------------NHWELRDFAANLVASVCRRFGHVYHNLQYRLTRTL---LNAFLD---PSK-AMTQHYGAIQGLAALGPSVVRVLILPQLETYMQLLEPEMQLEKQKNEMKRKEAWHVYGALLCAAGKCLYERVK 269          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|778723605|ref|XP_004144526.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus] >gi|700188227|gb|KGN43460.1| hypothetical protein Csa_7G037630 [Cucumis sativus])

HSP 1 Score: 103.219 bits (256), Expect = 7.549e-21
Identity = 76/244 (31.15%), Postives = 119/244 (48.77%), Query Frame = 0
Query:   15 VGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAGQLLERLKGIMEDRGV-----KLRKRMEAQHCYTALVPAVGEAREREVK 253
            V + T++GLH LVPY + +I + V     A G G    L+A+MRV   ++ NPH+H++ YLHQM+P V+T +   RLGS                 R +D                +H+ LR F A+ +A++ +++  VY  L + + KT    ++ FL      K +L   YG I G+  LG+  V ++++P     LE   G++E   +        KR EA H Y AL+ AVG+     +K
Sbjct:  199 VSLATDSGLHPLVPYFTCYIADEV-----ARGLGDYSLLFALMRVVWSLLQNPHIHIEPYLHQMMPSVVTCLVAKRLGS-----------------RFSD----------------NHWELRDFTAKVVALICKRFGHVYNTLQTKLTKTL---LNAFLD----PKRSLTQHYGAIRGLAALGMNVVHLLILPN----LEPYLGLLEPEMLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIK 393          
BLAST of EWM27476.1 vs. NCBI_GenBank
Match: gi|357459811|ref|XP_003600186.1| (TATA-binding protein associated factor [Medicago truncatula] >gi|355489234|gb|AES70437.1| TATA-binding protein associated factor [Medicago truncatula])

HSP 1 Score: 103.219 bits (256), Expect = 7.619e-21
Identity = 78/248 (31.45%), Postives = 124/248 (50.00%), Query Frame = 0
Query:   10 RRAYYVGVGTETGLHELVPYLSLHIHNTVTAAVGAGGRGSLDPLWAVMRVFRCMVVNPHMHLDLYLHQMLPGVMTVIANNRLGSHGEGVAGLAASKETKGGRGADWKAGNGWGQTGGDGAGDHYALRSFAAQTLAMLVRKYSGVYRPLASVICKTFAERVDEFLSVEPPDKGALATLYGTIVGIRHLGVKPVEVVLIPVAG---QLLERLKGIMEDRGVKLRKRMEAQHCYTALVPAVGEAREREVKK 254
            RRA  V + T++GLH LVPY +  + + V     A    +L+ L+A+MR+ R ++ NPH+H++LYLHQ++P ++T I   R+                 G R +D                +H+ LR F+A  +A++ +++  +Y  L   + KTF   +  FL    P K AL   YG I GI  LG + V ++++P       LLE  K + + +     KR EA   Y AL+ AVG+    +VK+
Sbjct:  193 RRAL-VTLATDSGLHPLVPYFTRFVADEV-----ARNLNNLNILFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRI-----------------GNRLSD----------------NHWELRDFSANLVALICKRFGHMYHNLQPRVTKTF---LHTFLD---PTK-ALPQHYGAIKGIAALGSRLVRLLILPNLEPYLHLLEPEKQLEKQKNEI--KRQEAWQVYGALLCAVGQNMHEKVKR 392          
The following BLAST results are available for this feature:
BLAST of EWM27476.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109737|gb|EWM27476.1|0.000e+0100.00transcription initiation factor tfiid subunit [Nan... [more]
gi|1102692414|gb|OIV92001.1|2.839e-2132.52hypothetical protein TanjilG_07740 [Lupinus angust... [more]
gi|1117466560|ref|XP_019425907.1|3.194e-2132.52PREDICTED: transcription initiation factor TFIID s... [more]
gi|1117466558|ref|XP_019425906.1|3.404e-2132.52PREDICTED: transcription initiation factor TFIID s... [more]
gi|698808084|ref|XP_009837071.1|4.289e-2128.13hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|635371071|emb|CCI40727.1|5.325e-2127.54unnamed protein product [Albugo candida][more]
gi|325179833|emb|CCA14236.1|6.298e-2127.97transcription initiation factor TFIID subunit 6 pu... [more]
gi|672158099|ref|XP_008798778.1|6.851e-2131.80PREDICTED: transcription initiation factor TFIID s... [more]
gi|778723605|ref|XP_004144526.2|7.549e-2131.15PREDICTED: transcription initiation factor TFIID s... [more]
gi|357459811|ref|XP_003600186.1|7.619e-2131.45TATA-binding protein associated factor [Medicago t... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3202rna3202Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications