rna3195, rna3195 (mRNA) Nannochloropsis gaditana

Overview
Namerna3195
Unique Namerna3195
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length773
Alignment locationCM002460.1:972685..974341 -

Link to JBrowse

Properties
Property NameValue
Productnitroreductase-like protein
Orig transcript idgnl|cribi|Naga_100855g3.1136.mrna
Orig protein idgnl|cribi|Naga_100855g3.1136
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:972685..974341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100855g3gene3072Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27486.1cds3187Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3195rna3195-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3195 ID=rna3195|Name=rna3195|organism=Nannochloropsis gaditana|type=mRNA|length=773bp
AGGCCATCGTGGACATGGTCGAAGCCCGTTTCCCCAAGCAGGAGGAGGAG
AGCATGTACATCGGGATGCGGAAGGTGACGGCGGCCGAGTACAAGGCCTA
CGAAGCGAAGCAGGCGCAGACGGGGGGGCTGGACCCGCTGGAGGCGAGCA
GGAAAGCGGCCAAAGAGGCGGCGGACAAGAAGTGAGGGGGGGGGGGAAGT
GGAATTACGGAGGGGAAGGTGGAGGGAGGGAACGTCAGGCGGGAGGTGGT
GACCTTGAATGGTGGCGGTGTGTGGAGCGTGCATGTGTTGGACGGTGTGT
GTGATGTGCTTGGAAGGACGGGGCGCGAGGGAAAAGAGCCGGGAGGAGGC
AACCGCGCCGAGGGAGGGCAGGAGGGAGGGCAGTGACCGCACGATAGAAG
CAGGGCGCCTCCTTTTGCGGAGAGGAAGGTGGTCTTCCCCTCTTCCTTCG
CCTGAAGAAGCAGAGACTCCAGAAAGCGTGCCAAAGGGAAGCGCGCACCG
GCGGGGGGGGGGGGGCTGATAGAGCTTGTCCTCCTCCGTCCTGTCTGGCG
CCTATCGAGCCCAGGGCGGGAAGGGGTGGGTCACTGCGCTTGCCTGACAC
AGCGGCACTTCCTGAGGGCTCCGCTGGGTGGTTTCTTTCTGGGAACGGAG
CGTGTGCACTCCTTGGACCTTTTCGTATCTCCTTCGATCTTGGTGTCGTC
AATCGTCTCCCTGAGCAGCATTTTAAGCGCGAGAGGGAGGGAGCGAGGAA
AGGAAGAATGTGACGGGAAAATG
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protein sequence of rna3195

>rna3195-protein ID=rna3195-protein|Name=rna3195|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MAMRPILIAFLLLVLLPMQKAFLVRAVPAIPVYQPPPPCYMAVHGAGDAI
SAPSGASVSLLAGPFSQIVHSRFSNTHYASHKPVHISTLNELLRLTQRAP
SSFNIQPFKLVVIRDPTLRDKVGHQAMLGANGNRVRTAPVTVVFAADVES
SRLMPQVVALLRQAGTFPEGFLKKIPFFANLFSTGYPFSLLRWCLYWGKR
VAMHVVGWFKAVPRLERPETWAVKNTMLAAMTFMLAASSHGLTTCPMEGF
DARRLRHLLGLPTRYVLPVVVSLGYAATPGEEAAQGGKEGHAVSSKQPPP
SLRFPMEEVVCEEAYGRPWKGVA
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mRNA from alignment at CM002460.1:972685..974341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3195 ID=rna3195|Name=rna3195|organism=Nannochloropsis gaditana|type=mRNA|length=1657bp|location=Sequence derived from alignment at CM002460.1:972685..974341- (Nannochloropsis gaditana)
GCCAAAATCAGGACAGTCGGTGAATTGGCCATGCCGAGGGCTGGCTTGCG
TGGGTGTGTCGTCCTTGTCTGGCGTGGGATTAAACTCAGCACGTGGTTGC
TTTGACTCGGAGCCGGCGCTCGCTCCCAGCGACGGCTTGAAGAAGACGAG
GCACATGGAAAAAGCACGCCACCGAAACAGGGCCCAGCGCACGGCGTGGC
ACACGTCGATGCCCCAATCATGACTTGACGACAACGTGCTCTCTGTCCGT
CGCATGGGACTGGGATTTCTCCGACCCTTTCAAAGAAACGGACGAAGCTT
TGTGCCGGCTGCTTGTGTGAGGAGGAAGTAGCAACTACGCCCTCGTTCGC
TTGCTCAACTTATAAAGGTTTCAAATCATTCCCGTCCTCTGCTTTCGACA
GGCATATGGCGATGCGTCCAATCCTTATTGCTTTTCTTCTTCTGGTGCTA
TTGCCCATGCAAAAGGCCTTCCTGGTTAGGGCAGTGCCAGCCATCCCTGT
ATATCAACCTCCTCCACCCTGCTATATGGCTGTGCACGGTGCAGGGGACG
CTATTTCCGCACCGAGTGGCGCAAGTGTGTCCCTTCTCGCTGGACCTTTC
TCTCAGATCGTGCACAGTCGGTTTTCCAACACCCATTACGCTTCCCACAA
ACCTGTGCATATTTCGACCTTGAATGAGCTTCTCCGCTTGACCCAGCGGG
CCCCTTCTTCGTTTAATATCCAGCCGTTCAAACTGGTTGTCATCCGAGAT
CCCACCCTCCGCGACAAGGTCGGCCATCAAGCTATGCTGGGTGCCAACGG
CAACCGTGTTCGGACCGCGCCGGTCACCGTGGTGTTTGCGGCGGACGTGG
AGAGCAGCCGATTGATGCCCCAGGTGGTGGCGCTCCTGCGCCAGGCCGGC
ACGTTTCCCGAAGGATTTTTGAAGAAGATACCTTTCTTTGCCAACCTTTT
TTCTACCGGGTATCCTTTCTCCCTGCTTCGATGGTGCTTGTATTGGGGCA
AGCGCGTGGCAATGCACGTGGTCGGGTGGTTTAAAGCGGTGCCACGATTG
GAACGCCCGGAGACCTGGGCCGTGAAGAACACGATGCTGGCCGCCATGAC
CTTCATGCTGGCTGCTTCCTCCCACGGCCTCACCACCTGCCCCATGGAAG
GCTTCGACGCCCGGCGACTGCGGCATTTGCTCGGGCTTCCGACTCGGTAC
GTGCTCCCGGTGGTGGTCTCCCTGGGATATGCGGCCACCCCGGGGGAAGA
AGCGGCGCAGGGCGGGAAGGAGGGGCACGCGGTCTCCTCCAAGCAACCTC
CCCCCTCCCTGCGCTTTCCCATGGAGGAGGTGGTTTGTGAGGAGGCGTAC
GGCCGACCCTGGAAGGGCGTGGCGTAGGAAGGGAAATAGAAAAGGAGGAA
GGAGGGAGGGAAGGAGGGAAGAGGAGGGAAGGCGGAGGGAGGGGAGGAAG
GAGGAAAAAGGGAAAGAGCGAAGCCTGCGGCCGGAGATGTACAAAACCAT
AAAATTGCCTAAGCGGGATCTAAAGCAATGATTGAGAGTCGGAAGCCGCC
ATTTTCCCGTCACATTCTTCCTTTCCTCGCTCCCTCCCTCTCGCGCTTAA
AATGCTGCTCAGGGAGACGATTGACGACACCAAGATCGAAGGAGATACGA
AAAGGTC
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Coding sequence (CDS) from alignment at CM002460.1:972685..974341-

>rna3195 ID=rna3195|Name=rna3195|organism=Nannochloropsis gaditana|type=CDS|length=972bp|location=Sequence derived from alignment at CM002460.1:972685..974341- (Nannochloropsis gaditana)
ATGGCGATGCGTCCAATCCTTATTGCTTTTCTTCTTCTGGTGCTATTGCC
CATGCAAAAGGCCTTCCTGGTTAGGGCAGTGCCAGCCATCCCTGTATATC
AACCTCCTCCACCCTGCTATATGGCTGTGCACGGTGCAGGGGACGCTATT
TCCGCACCGAGTGGCGCAAGTGTGTCCCTTCTCGCTGGACCTTTCTCTCA
GATCGTGCACAGTCGGTTTTCCAACACCCATTACGCTTCCCACAAACCTG
TGCATATTTCGACCTTGAATGAGCTTCTCCGCTTGACCCAGCGGGCCCCT
TCTTCGTTTAATATCCAGCCGTTCAAACTGGTTGTCATCCGAGATCCCAC
CCTCCGCGACAAGGTCGGCCATCAAGCTATGCTGGGTGCCAACGGCAACC
GTGTTCGGACCGCGCCGGTCACCGTGGTGTTTGCGGCGGACGTGGAGAGC
AGCCGATTGATGCCCCAGGTGGTGGCGCTCCTGCGCCAGGCCGGCACGTT
TCCCGAAGGATTTTTGAAGAAGATACCTTTCTTTGCCAACCTTTTTTCTA
CCGGGTATCCTTTCTCCCTGCTTCGATGGTGCTTGTATTGGGGCAAGCGC
GTGGCAATGCACGTGGTCGGGTGGTTTAAAGCGGTGCCACGATTGGAACG
CCCGGAGACCTGGGCCGTGAAGAACACGATGCTGGCCGCCATGACCTTCA
TGCTGGCTGCTTCCTCCCACGGCCTCACCACCTGCCCCATGGAAGGCTTC
GACGCCCGGCGACTGCGGCATTTGCTCGGGCTTCCGACTCGGTACGTGCT
CCCGGTGGTGGTCTCCCTGGGATATGCGGCCACCCCGGGGGAAGAAGCGG
CGCAGGGCGGGAAGGAGGGGCACGCGGTCTCCTCCAAGCAACCTCCCCCC
TCCCTGCGCTTTCCCATGGAGGAGGTGGTTTGTGAGGAGGCGTACGGCCG
ACCCTGGAAGGGCGTGGCGTAG
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Synonyms
Publications