rna3186, rna3186 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3186
Unique Name	rna3186
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2285
Alignment location	CM002460.1:947575..949404 -

Link to JBrowse

Properties


Property Name	Value
Product	u3 small nucleolar rna-associated protein 15
Orig transcript id	gnl\|cribi\|Naga_100099g12.8541.mrna
Orig protein id	gnl\|cribi\|Naga_100099g12.8541
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:947575..949404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100099g12	gene3063	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27505.1	cds3178	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3186	rna3186-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:947575..949404-
coding sequence from alignment at CM002460.1:947575..949404-

mRNA sequence

>rna3186 ID=rna3186|Name=rna3186|organism=Nannochloropsis gaditana|type=mRNA|length=2285bp
TGCCCGCTGCTTGCGGAAACGGCGGTCTCTTTTTCTGTGCACTCCGTGGC
TAATTCACTGCCTGCATCCCCGTACCGACTGTGTGTGCAGGTGTGCTTGC
GACCACCTTTTTCCATCGCCTTGGAAAAAGAGAAGTTTTCATCCCAGGAC
GGGAAACCTCTCCGGCGCACTTTCCTCGCACTCAGAACAACTGCAACCCT
TTCAAAACATCAGTACTCGCCACGCTGTCACTTCTTGGAATCATGCCGTA
CATCACCACATCTCGTCGCTTTTCATGCAACTTGTTCCTTGGAGTCCTTG
TCGCGCTTAGCCTAGGCTGGGTTCATGGTAATGGTCCTTGCACTCTACCG
ATGAATGCCCGCCGACACGGTGCCGGTGGGTGTGCAGCATCCAATGTGGG
AAACGGGGCCAATGCGGGCTACCCGTGTCCACCGTGCTACTTCGGCGTAA
CGGCCACTCGGGCCACGCACACTTCTCCCGTCTTATCCTTCCGACAGCCC
AAGGAGAGTTTGGTGCGTTTGAAGGAGCTTGGAGGGAAAGTGGCGGGTGG
AGTCGGCCAGGTGGTAGACAAAGTGCGGCAGAAATGGGACGCGCGACAGG
CACACAAAAAGCAAAACCCGCCCGGTGGGAGGGGAAAGGTGGGTCGGAAG
CAAAACAAGGCCCAAGGAAACGAAGGAGGGTGCAATGTGGCAGCTTTGCG
TGTGGAACGGGGGCTCTTTCGGCATGCTCCCACCGGGGCAGGGCCACTTG
GGGACGACGAAGAAGAAGAGTGCGCGGCCGGACAAGACCTGCATCATTTG
CACGAGCACCATCAGGGCGGCAAGGCGACCGGCTCCGGGAAGGTTTCGTC
CCCTCTGAACACGGCGGGCGTGGAGGAGGAGACGGGGCCCGCCCTATTTG
TCCTGGGTAGGACCCAATCGTTTGACACGGCGCTCCTCCGAGAAGCAGAG
GCGCGCTCCCACCATCGTCGGGTCCCGCTTTCGTACGGAAACGGTTTGGT
GGATTTTGTCGGCTTTGCCCTCAAGCTCTTGGCCCTCCTCTTGTTCCAAG
TGCTCGGCACCGCCTTGGTCGTGAACGACTACCAGACCACAGGCTTGGTA
TCCCAGACGCTCATCCGATTCGCCTCCCTACTCGCGGGGCTGGCCTTCGT
GCCCCCGTTGGTGGTGGCCCTCCGGGAGTCGCTTCCCTCCCACGCGCGGA
ACCCCTTGGTGCGTGGCCTCGCCCATCTCTTCGAACTCGCCTTGGACGTG
GTGGTGGTCGCCGCCTTGTCCCTCCTGGCCTCCGTCCTCCTGACCGCCGT
TATCTCCTTGCCTTCCTACAACTTCCTCCTCTCGCGGGAGCTGGGCGAGG
AATATATCAAGGGGGCCCTTTCGGCGGGCTTCGTCATGTTCTTTCTGTAC
GCCTTCAGCAAGAATTTCGAGCCACTGGCGAGCAAGTGGTTCATGTGAGA
AGGGGAAAGGGGATATCGAGCATGTAGATAAACGGGGTGTGTCGAAAAGG
ATTGTGCAGAGCGGCAAGAGCGAGCCAGGCGTGTTTGCAGGGAGACAATG
TCTTTCACTGACGGGGTGGGACATTATGGAGTGGATGGGGGCGACCTGCC
GCCCGTGTGGTGGGACGAAGACGCGTGCATCCGCTTCAGCCGGGAGCTTG
CACCTAGAAGTGTGCAGAGGGGGGATGTTTGAGAGCAGAGCAGAGTGCCT
TGTCCATACCAGGTAAAGGGGAGGGGTCATGGGGAGGGGGAGGGTGTCGG
AGGAAGTGAGAACGACCGAGTGATTGAACGCAGGGAAGACGAGGGGGAAT
GAGGCTCGGGCGAGCCATGGGAATGTACGGAGGATCTGTATAGTGTCGAA
GATGTCAGAAAAGAATCCATGCGGGGTGCTTCAGGAGGAGAGCCAGGGGG
GGATGGGAGCGAGACGGGCAGAGGGGCGGGTGGAGTGAGGCAATCGCCGA
GCAGCTGGACGGATAGGAGGGTTTTGCCATGGATTTGGGCATGTCTAGGT
GGGATAGGAAGAGACCCTGGTATGTCAGGGGGTGGGACGGCTTGTGTCCC
TTGCCGGACTCCTGTGGGCAAAGGCAAGCCAAAGCAACACTCCTCCGGGT
GGCTCTAGAATCTCAAGTCGTCATACATGTTGTTTCTTTGTCAAACTCCA
AATCTACTATCTTTGTGAGGCTCTCAGGACTCCATAACGTCCCTCTCTGC
TTCCCCTAGTCTCTCACCTGTCCTCGAGAGGCTCCCACCGACCCCTTCTC
AATCCTCCCCCGCGCGCCCCGGGCTGGTCAACTCC

protein sequence of rna3186

>rna3186-protein ID=rna3186-protein|Name=rna3186|organism=Nannochloropsis gaditana|type=polypeptide|length=563bp
MADYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLS
PYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIAC
GDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSG
SDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHT
LKVWDMRGRGGGGGGSNRPVSRFNHGCPVEACLALPGGSLLVSAGGETIK
VWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVY
DLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTST
SAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKR
QRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTG
RDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDEL
IGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVGEGGRDGGWPGGN
EEELTSPGRAGED

mRNA from alignment at CM002460.1:947575..949404-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3186 ID=rna3186|Name=rna3186|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp|location=Sequence derived from alignment at CM002460.1:947575..949404- (Nannochloropsis gaditana)
AGGCTCTCCATGGCAGACTACAAAAAAGTTCGACACAGACAGCGGCCTCG
GCCGGTGGAGCGGCCCAAGCCCGATGGGAATTTCTGGAGCAAATTTATCA
AACCCACCGATCTGTCATTCCCAGGGGCAGTGTATGCTGTGGATTTTAAT
CCCCTATCTCCATATGATGCTCTTGTTACAGCCTCTGCACGCTTGTCCCT
AGTCTCGCTAAGTCGGGGGTCCCCGAAGGTCAGCAAAACATTCTCCCGCT
TCAATGGTCTGGCTTATTCGGGCGTGTTCCGGCCCACGGATGGAAAATTG
ATCGCATGTGGAGACGATAATGGTGTCGTCACTGTATTCGATATGGCGAC
CAAGGCGTCTTTGCGTCAGTTTACGACAGCTGCAACCCATCGAGGCACCA
CGGGCGCGGCCGCCCGTATTGTGCGCTGGCGCAAGGATGGATTAGCCCTG
TTTTCGGGCTCGGATGATAAATGCGTGCGATATTGGGATTTGGGCACAGC
ACAACTGCTGACAACGATCCCTCAAGCACACAAAGACTATGTCCGATGCG
GCGCCATCAATCCGGCCGCTGCCTCTGAATTGTTCGTTTCAGGATCCTAC
GACCACACTTTAAAAGTGTGGGATATGCGGGGCAGGGGCGGTGGTGGTGG
TGGAAGCAATCGGCCGGTCTCTAGATTCAACCACGGCTGTCCAGTGGAAG
CTTGCCTAGCCCTGCCCGGGGGATCCCTGCTCGTGTCTGCCGGCGGGGAG
ACGATCAAAGTCTGGGATTTGCTCGGCGGGGGCGGGGGGGCACACGGCGG
CTTGCTGCATGCGTTTTCCAACCACGCCAAGACCATCACGAGCCTCACCA
CCGATCGAGAAGGAAGCCGTCTCCTCTCTGCCTCCCTGGATGGGCACGTG
AAAGTCTACGATCTGCAAACTTATGACGTGCTCCACTCGTTCCGGGCGGC
CGGCCCCCTCCTCAGCGTGGGGCTTGCCCCCGACAACGGCAAGCTGGTTA
TGGGCCAGGCGGACGGAACCTTCTCCGTTCGCACACGTCGCTCCGCCCTG
ACGTCCACGTCCGCCGCCCCCATTTCATCCTCCTCCGGGCTGCCCTCGTC
GGAGCTGCCCCGTACCCCGTTGCTCTTTGGGGGAACCGCCCGCCACTTTC
ACCGGGGGAAAAACGCGGTGGCGGGCGCGGGAGACTTTCAAGTGGAACTG
GCAAAGCGGCAACGGCTTGCGCCGTACGACATCTCCCTGAAGGGTTTCCG
GTACCATGAAGCTCTTGACAAGGCGCTGGCCAGCCGCAATCCCCGCACGA
TCGTCGCCGTTCTGGACGAGCTCATCATGCGGAGGGGCCTGCGGGTGGCT
CTGACAGGGCGAGACGAAGCAGGCATGGAGCCTCTCCTCGCTTTCTTAGC
GCGCTATTTAAACCATCCAGATTACGCGTCCTCACTGAGCGATGTCTGCC
ACATGGTGTTGGATATCTATGCCCCCATGCTGGGGCAGTCCCCGGTCCTG
GACGAGCTGATCGGACGGGTGGCGCGGGGGGTGAAAGCCGAGGTGGCGGT
GCAGAGGGAGATGCTGGGTCTGGTCGGGGCGATGGATATGCTGATTGCCA
CGCAGCTCGAGGCAAGCGTGGGAGAAGGGGGCCGGGACGGGGGATGGCCG
GGAGGAAATGAGGAGGAGTTGACCAGCCCGGGGCGCGCGGGGGAGGATTG
AGAAGGGGTCGGTGGGAGCCTCTCGAGGACAGGTGAGAGACTAGGGGAAG
CAGAGAGGGACGTTATGGAGTCCTGAGAGCCTCACAAAGATAGTAGATTT
GGAGTTTGACAAAGAAACAACATGTATGAC

Coding sequence (CDS) from alignment at CM002460.1:947575..949404-

>rna3186 ID=rna3186|Name=rna3186|organism=Nannochloropsis gaditana|type=CDS|length=1692bp|location=Sequence derived from alignment at CM002460.1:947575..949404- (Nannochloropsis gaditana)
ATGGCAGACTACAAAAAAGTTCGACACAGACAGCGGCCTCGGCCGGTGGA
GCGGCCCAAGCCCGATGGGAATTTCTGGAGCAAATTTATCAAACCCACCG
ATCTGTCATTCCCAGGGGCAGTGTATGCTGTGGATTTTAATCCCCTATCT
CCATATGATGCTCTTGTTACAGCCTCTGCACGCTTGTCCCTAGTCTCGCT
AAGTCGGGGGTCCCCGAAGGTCAGCAAAACATTCTCCCGCTTCAATGGTC
TGGCTTATTCGGGCGTGTTCCGGCCCACGGATGGAAAATTGATCGCATGT
GGAGACGATAATGGTGTCGTCACTGTATTCGATATGGCGACCAAGGCGTC
TTTGCGTCAGTTTACGACAGCTGCAACCCATCGAGGCACCACGGGCGCGG
CCGCCCGTATTGTGCGCTGGCGCAAGGATGGATTAGCCCTGTTTTCGGGC
TCGGATGATAAATGCGTGCGATATTGGGATTTGGGCACAGCACAACTGCT
GACAACGATCCCTCAAGCACACAAAGACTATGTCCGATGCGGCGCCATCA
ATCCGGCCGCTGCCTCTGAATTGTTCGTTTCAGGATCCTACGACCACACT
TTAAAAGTGTGGGATATGCGGGGCAGGGGCGGTGGTGGTGGTGGAAGCAA
TCGGCCGGTCTCTAGATTCAACCACGGCTGTCCAGTGGAAGCTTGCCTAG
CCCTGCCCGGGGGATCCCTGCTCGTGTCTGCCGGCGGGGAGACGATCAAA
GTCTGGGATTTGCTCGGCGGGGGCGGGGGGGCACACGGCGGCTTGCTGCA
TGCGTTTTCCAACCACGCCAAGACCATCACGAGCCTCACCACCGATCGAG
AAGGAAGCCGTCTCCTCTCTGCCTCCCTGGATGGGCACGTGAAAGTCTAC
GATCTGCAAACTTATGACGTGCTCCACTCGTTCCGGGCGGCCGGCCCCCT
CCTCAGCGTGGGGCTTGCCCCCGACAACGGCAAGCTGGTTATGGGCCAGG
CGGACGGAACCTTCTCCGTTCGCACACGTCGCTCCGCCCTGACGTCCACG
TCCGCCGCCCCCATTTCATCCTCCTCCGGGCTGCCCTCGTCGGAGCTGCC
CCGTACCCCGTTGCTCTTTGGGGGAACCGCCCGCCACTTTCACCGGGGGA
AAAACGCGGTGGCGGGCGCGGGAGACTTTCAAGTGGAACTGGCAAAGCGG
CAACGGCTTGCGCCGTACGACATCTCCCTGAAGGGTTTCCGGTACCATGA
AGCTCTTGACAAGGCGCTGGCCAGCCGCAATCCCCGCACGATCGTCGCCG
TTCTGGACGAGCTCATCATGCGGAGGGGCCTGCGGGTGGCTCTGACAGGG
CGAGACGAAGCAGGCATGGAGCCTCTCCTCGCTTTCTTAGCGCGCTATTT
AAACCATCCAGATTACGCGTCCTCACTGAGCGATGTCTGCCACATGGTGT
TGGATATCTATGCCCCCATGCTGGGGCAGTCCCCGGTCCTGGACGAGCTG
ATCGGACGGGTGGCGCGGGGGGTGAAAGCCGAGGTGGCGGTGCAGAGGGA
GATGCTGGGTCTGGTCGGGGCGATGGATATGCTGATTGCCACGCAGCTCG
AGGCAAGCGTGGGAGAAGGGGGCCGGGACGGGGGATGGCCGGGAGGAAAT
GAGGAGGAGTTGACCAGCCCGGGGCGCGCGGGGGAGGATTGA

Synonyms

Publications