EWM27505.1, cds3178 (CDS) Nannochloropsis gaditana

Overview
NameEWM27505.1
Unique Namecds3178
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:947704..949395 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27505.1
Productu3 small nucleolar rna-associated protein 15
Orig transcript idgnl|cribi|Naga_100099g12.8541.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:947704..949395 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR018983U3_snoRNA-assocProt_15_C
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|585109769|gb|EWM27505.1| (u3 small nucleolar rna-associated protein 15 [Nannochloropsis gaditana])

HSP 1 Score: 1143.26 bits (2956), Expect = 0.000e+0
Identity = 563/563 (100.00%), Postives = 563/563 (100.00%), Query Frame = 0
Query:    1 MADYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSRFNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVGEGGRDGGWPGGNEEELTSPGRAGED 563
            MADYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSRFNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVGEGGRDGGWPGGNEEELTSPGRAGED
Sbjct:    1 MADYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSRFNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVGEGGRDGGWPGGNEEELTSPGRAGED 563          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|568040991|gb|ETM38418.1| (hypothetical protein L914_15281, partial [Phytophthora parasitica])

HSP 1 Score: 419.083 bits (1076), Expect = 6.012e-138
Identity = 228/540 (42.22%), Postives = 335/540 (62.04%), Query Frame = 0
Query:    3 DYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            ++K++  +Q P   E    + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KTFSRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    6 EFKRLVLKQFPATNEVETAENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTFSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 509          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|566015454|gb|ETI38365.1| (hypothetical protein F443_15868 [Phytophthora parasitica P1569] >gi|570319188|gb|ETO67136.1| hypothetical protein F444_15849 [Phytophthora parasitica P1976] >gi|570942988|gb|ETP08245.1| hypothetical protein F441_15701 [Phytophthora parasitica CJ01A1] >gi|970647314|gb|KUF87165.1| hypothetical protein AM588_10003708 [Phytophthora nicotianae] >gi|970656671|gb|KUF94655.1| U3 small nucleolar RNA-associated protein 15 [Phytophthora nicotianae])

HSP 1 Score: 417.927 bits (1073), Expect = 1.834e-137
Identity = 227/540 (42.04%), Postives = 335/540 (62.04%), Query Frame = 0
Query:    3 DYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            ++K++  +Q P   E    + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KT+SRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    6 EFKRLVLKQFPATNEVETAENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTYSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 509          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|675173159|ref|XP_008895464.1| (hypothetical protein PPTG_04880 [Phytophthora parasitica INRA-310] >gi|568104994|gb|ETN19639.1| hypothetical protein PPTG_04880 [Phytophthora parasitica INRA-310])

HSP 1 Score: 416.772 bits (1070), Expect = 5.187e-137
Identity = 227/540 (42.04%), Postives = 334/540 (61.85%), Query Frame = 0
Query:    3 DYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            ++K++  +Q P   E    + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KT+SRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    6 EFKRLVLKQFPATNEVETAENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTYSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHPFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 509          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|570973805|gb|ETP36338.1| (hypothetical protein F442_15709, partial [Phytophthora parasitica P10297])

HSP 1 Score: 417.157 bits (1071), Expect = 8.060e-137
Identity = 227/540 (42.04%), Postives = 335/540 (62.04%), Query Frame = 0
Query:    3 DYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            ++K++  +Q P   E    + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KT+SRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:   30 EFKRLVLKQFPATNEVETAENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTYSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 533          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|567952928|gb|ETK78591.1| (hypothetical protein L915_15424, partial [Phytophthora parasitica])

HSP 1 Score: 415.231 bits (1066), Expect = 1.554e-136
Identity = 227/532 (42.67%), Postives = 329/532 (61.84%), Query Frame = 0
Query:   11 QRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            Q P   E    + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KTFSRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    1 QFPATNEVETAENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTFSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 496          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|301118520|ref|XP_002906988.1| (U3 small nucleolar RNA-associated protein, putative [Phytophthora infestans T30-4] >gi|262108337|gb|EEY66389.1| U3 small nucleolar RNA-associated protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 415.231 bits (1066), Expect = 2.119e-136
Identity = 225/540 (41.67%), Postives = 333/540 (61.67%), Query Frame = 0
Query:    3 DYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            ++K++  +Q P   E    + ++W KF  P DL   G V  +D +P++P+   +T+S R+ L S +  + ++ KTFSRF  + YSG FR +DGKL+  G +   V V D+ T++ LR F      +G T AA R  R+  D + + S SDDK  RYWDL T + L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+S GG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC ++ D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    6 EFKRLVLKQFPATNEVETAENSYWKKFHAPQDLQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTFSRFRDVVYSGTFR-SDGKLLVAGGEAPFVQVLDINTRSILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTGKPLALLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMVMPGGSLLLSTGGNTIKVWDILCGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLAFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIMCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 509          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|568011090|gb|ETL85268.1| (hypothetical protein L917_15142, partial [Phytophthora parasitica])

HSP 1 Score: 414.846 bits (1065), Expect = 2.319e-136
Identity = 226/533 (42.40%), Postives = 330/533 (61.91%), Query Frame = 0
Query:   10 RQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            +Q P   E    + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KT+SRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++ + ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    2 KQFPATNEVETAENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTYSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSSHN-VWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 498          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|567981584|gb|ETL32022.1| (hypothetical protein L916_15318, partial [Phytophthora parasitica])

HSP 1 Score: 413.305 bits (1061), Expect = 6.643e-136
Identity = 224/521 (42.99%), Postives = 325/521 (62.38%), Query Frame = 0
Query:   22 DGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVG 538
            + ++W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KTFSRF  + YSG FR +DGKL+  G +   V V D+ T+A LR F      +G T AA R  R+  D + + S SDDK  RYWDL TA+ L  + + H DYVR  A NP++   ++ +GSYDHT+K+WD+R        S++ VS+     +HG PVEAC+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RL+S SLDGH+K+YDL+TY++ H F+    +L+ G++P N  L  G  DG  +VR  R  L  T    I +          R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++L +VG MD L+A Q   +VG
Sbjct:    2 ENSYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTFSRFRDVVYSGTFR-SDGKLLVAGGEAPYVQVLDINTRAILRSF------KGHT-AAIRSTRFSADNVHVLSCSDDKTARYWDLPTAKPLGLLGE-HSDYVRSSAANPSS-HNVWATGSYDHTVKLWDLRT-------SDQTVSKSTMNLDHGAPVEACMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLMSGSLDGHLKIYDLKTYELAHGFKYKSGVLTFGMSPTNSHLFAGTVDGILAVR--RRTLKRTEQNDIKT----------RQAIIRGGSYKYFLRGKNAKPAAADYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDSLFVKLREKLNEELRVQKQVLSVVGMMDSLMAAQSNGTVG 486          
BLAST of EWM27505.1 vs. NCBI_GenBank
Match: gi|1214704026|gb|OWZ15945.1| (U3 small nucleolar RNA-associated protein [Phytophthora megakarya])

HSP 1 Score: 412.92 bits (1060), Expect = 1.750e-135
Identity = 228/539 (42.30%), Postives = 329/539 (61.04%), Query Frame = 0
Query:    3 DYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPTDGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGAINPAAASELFVSGSYDHTLKVWDMRGRGGGGGGSNRPVSR----FNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRTPLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASV 537
            ++K++  +Q P   E    +  +W KF  P +L   G V  +D +P++P+   +T+S R+ L S +  + ++ KTFSRF  + YSG FR +DGKLI  G ++  V V D+ T+A LR F      +G T +A R  R+  D + + S SDDK  RYWDL T + L  +   H DYVR  A NPA+ + ++ +GSYDHT+K+WD+R        SN+ VS+     +HG PVE C+ +PGGSLL+SAGG TIKVWD+L GG      +LH+FS+H KTITSL  D  G+RLLS SLDGH+K+YDL+TY++ H F+    +L+ G++  N  L  G  DG  +VR  R  L       I          L R  ++ GG+ ++F RGKNA   A D+ V   + +R+ PYD +L+ F Y +AL++AL +R+P  + ++L+EL +R GL+ AL GRDE  +EPLLAFL +Y+  P YAS L  VC +V D+YAP L QS ++D L  ++   +  E+ VQ+++LG+VG MD L+A Q    V
Sbjct:    6 EFKRLVLKQFPATTEVETAENTYWKKFHAPQELQQVGPVTHIDVSPVAPHQVAITSSTRIHLYSTT--TNEIVKTFSRFRDVVYSGTFR-SDGKLIVAGGESPHVQVLDINTRAILRSF------KGHT-SAIRSTRFSADNVHVLSCSDDKTARYWDLPTGKPLALLGD-HTDYVRSSAANPASHN-VWATGSYDHTVKLWDLRT-------SNQTVSKSTMSLDHGAPVETCMIMPGGSLLLSAGGNTIKVWDILSGGR-----MLHSFSSHQKTITSLGLDGTGTRLLSGSLDGHLKIYDLKTYELAHGFKYKSGVLAFGMSRTNSHLFAGTVDGMLAVR--RRTLKRVEQNDI----------LNRQAIIRGGSYKYFLRGKNAKPAASDYTVATTRHKRIQPYDRALRKFDYKKALNEALDTRSPVVVASMLEELRLRVGLKRALGGRDEESLEPLLAFLIKYVTDPKYASLLIHVCTIVCDLYAPKLSQSMLIDGLFVKLHEKLNEELRVQKQVLGVVGMMDSLMAAQTNGPV 508          
The following BLAST results are available for this feature:
BLAST of EWM27505.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109769|gb|EWM27505.1|0.000e+0100.00u3 small nucleolar rna-associated protein 15 [Nann... [more]
gi|568040991|gb|ETM38418.1|6.012e-13842.22hypothetical protein L914_15281, partial [Phytopht... [more]
gi|566015454|gb|ETI38365.1|1.834e-13742.04hypothetical protein F443_15868 [Phytophthora para... [more]
gi|675173159|ref|XP_008895464.1|5.187e-13742.04hypothetical protein PPTG_04880 [Phytophthora para... [more]
gi|570973805|gb|ETP36338.1|8.060e-13742.04hypothetical protein F442_15709, partial [Phytopht... [more]
gi|567952928|gb|ETK78591.1|1.554e-13642.67hypothetical protein L915_15424, partial [Phytopht... [more]
gi|301118520|ref|XP_002906988.1|2.119e-13641.67U3 small nucleolar RNA-associated protein, putativ... [more]
gi|568011090|gb|ETL85268.1|2.319e-13642.40hypothetical protein L917_15142, partial [Phytopht... [more]
gi|567981584|gb|ETL32022.1|6.643e-13642.99hypothetical protein L916_15318, partial [Phytopht... [more]
gi|1214704026|gb|OWZ15945.1|1.750e-13542.30U3 small nucleolar RNA-associated protein [Phytoph... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3186rna3186Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications