rna3181, rna3181 (mRNA) Nannochloropsis gaditana

Overview
Namerna3181
Unique Namerna3181
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length714
Alignment locationCM002460.1:933221..935164 +

Link to JBrowse

Properties
Property NameValue
Productatp synthase alpha subunit
Orig transcript idgnl|cribi|Naga_100099g7.8539.mrna
Orig protein idgnl|cribi|Naga_100099g7.8539
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:933221..935164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g7gene3058Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3181rna3181-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27503.1cds3173Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3181 ID=rna3181|Name=rna3181|organism=Nannochloropsis gaditana|type=mRNA|length=714bp
ATGGCTCGAGGGCTGTTGAGAGGAATCTGGGCGCTGTCATCGGCAACGTC
TGCCGCGTCTTTTGTCGTACCCGTATTCCGGCATGCGGGAGGTGTGGCAC
GCGGGGCTCCACTGTCTCGTTCCATGGCCCGTGGAATTGGCAGTGGCCTC
AGTTCTCCGTGGGACGTGGTGTCGGCCATTCCGTCACGTTCCTTGTCCTC
CCTAAAAGCCACCTCCGTGGGCTCTACCACAACCAGTACCGCGCCTGACA
GCGACGTGAAACCCTGGAAGATAAACTTGCTCTACGACGGCAAATGCTCT
CTGTGCATGAAGGAAGTGACATTTTTGCAAAAACGAGACGTGGATGGCAA
CATCCTCTTCACGGATCTGAATGACCCCAACTTCAAGGCAGAAGAAAACG
GGGGGGTGGATTATGAAGCAGGCATGAAGTATATCCACGCGGTTTTACCC
GACGGGGAGGTGGTGAAGGGTGTGGAAGTCTTCAGACGCGTCTACGAAGT
TATCGGCCTAGGGTGGGTCTATGCTGCCACCAAGATCCCCTTTATCGGCG
CCGCTGCGGACTGGGCCTATGACCAATGGGCTATCCGTCGCCTCCAAATC
ACTGGCCGACCGGACTTAGAGGTGATATTGAAGCAGCGTCAAGAGGAGCT
CAAGAAAAAAGACTTTTCGTGTGATGACGAAGGGGAATGCGAAATTGATT
GGGATAAGCTGTAG
back to top

protein sequence of rna3181

>rna3181-protein ID=rna3181-protein|Name=rna3181|organism=Nannochloropsis gaditana|type=polypeptide|length=647bp
MAPHADLFLAELFGGVVNKAREGTLVQIHQSALARVSGLREAKIHDLVHF
SQPDGSFTQGLVVDLEQNTVAVALLDKTMPVEGAHAVLADTALSMPVGPS
LLGRVVDPLGRPLPDLEPAMATKQVDSTESPSDRTNTKSSSSSSASLPST
PIMSSQRRAPGIMARKPLCHRLRTGVKVLDVFHPLGHGQSVGLFGRPGSG
KSTLALQIIANQNTAAPVPSPTAPLHCVYVAIGQEPRAVQEAVGELIRRA
CFQHVTVVAATQDMPPGLRFLAPFAGCAQGEYWRDQGGRVLVVCDDLSRH
AAAYSEMAKFMQKPEVEHGLALHGPLLERCAQMSDAKGGGAMTGLVVVEG
EVTSGQEGGVGGGKEDGGHGLAHRINSLVDHAITLNVGLAQRRVFPAVDV
TQQMNLPSAGAALLPEPAKWCVQQLRMMWAEALDKEAGAKLAERLGIQAV
EEGEEGKVEWLEYLKKVRILFEQRAPSGEGAVLWTDEAGLVLLLMCCLQR
QVLGHLDAGTVRALERIMAEELPRAAGWRKLRREVEALTQHADVRTVAEA
FAEAHMTAQRRVKGVEREGDGGRGEFGQGGVTSPSMGKEGLALNEEVNRV
YKRCSDVLAHAINYAQKKQQIAKLTNSADEAGDIARSRSQTNVSRRR
back to top

mRNA from alignment at CM002460.1:933221..935164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3181 ID=rna3181|Name=rna3181|organism=Nannochloropsis gaditana|type=mRNA|length=1944bp|location=Sequence derived from alignment at CM002460.1:933221..935164+ (Nannochloropsis gaditana)
ATGGCCCCTCACGCGGACCTCTTCCTGGCAGAGCTTTTTGGAGGCGTCGT
GAACaaagcaagggaaggaacgcTGGTCCAAATTCACCAGAGTGCCTTGG
CACGGGTGAGTGGCTTGCGCGAGGCAAAAATACACGATTTGGTTCATTTT
TCCCAGCCGGATGGGTCCTTTACGCAAGGGCTGGTAGTGGATCTGGAACA
AAACACGGTGGCTGTCGCCCTCTTGGACAAGACAATGCCCGTGGAAGGCG
CCCACGCGGTCTTGGCGGACACAGCGCTCAGCATGCCGGTGGGTCCGTCT
TTGCTGGGACGCGTCGTCGATCCTTTGGGGAGGCCGTTGCCTGATCTGGA
ACCCGCTATGGCCACAAAGCAAGTAGACTCCACAGAGTCTCCATCGGACC
GCACAAACACaaagagctcctcctcttcctccgcttcccttccttccact
cccaTCATGAGCAGCCAGCGCCGGGCGCCCGGGATCATGGCGCGAAAACC
CCTGTGCCACCGGCTGCGCACAGGGGTCAAGGTTCTGGacgtcttccacc
ccctcggccacggccagaGCGTGGGACTCTTCGGAAGGCCCGGGAGCGGG
AAGTCAACGCTGGCCCTGCAGATCATCGCCAACCAGAACACGGCGGCGCC
TGTCCCTTCCCCGACCGCCCCACTGCACTGCGTCTATGTCGCCATTGGCC
AGGAGCCCCGGGCAGTCCAAGAGGCCGTGGGTGAACTCATCCGCCGTGCC
TGCTTTCAGCACGTTACAGTAGTCGCCGCCACACAGGACATGCCCCCCGG
GCTTCGGTTTCTGGCCCCCTTCGCGGGCTGTGCTCAGGGAGAGTATTGGC
GGGATCAGGGGGGACGAGTCCTGGTGGTCTGCGATGACCTGTCTAGGCAT
GCGGCGGCTTATTCGGAGATGGCCAAATTCATGCAGAAGCCTGAGGTGGA
GCATGGGCTGGCTCTGCACGGACCTTTGTTGGAGAGGTGCGCGCAGATGT
CTGAtgccaagggaggaggtgcgatGACGGGtttggtggtggtggagggg
gaggtgacaagcgggcaggagggaggggtggggggagggaaggaggacgg
gggtcACGGCCTGGCGCATCGAATCAATTCCCTGGTCGACCATGCCATCA
CCTTGAACGTCGGCCTCGCGCAACGGCGGGTGTTTCCGGCCGTAGACGTG
ACGCAACAGATGAATTTGCCCTCCGCGGGcgccgcccttctccctgaACC
CGCTAAATGGTGCGTACAGCAACTGAGGATGATGTgggcggaggccctgg
acaaggaggcgggcgcgAAGTTGGCAGAAAGATTGGGAAtccaggcggtg
gaggagggggaagaagggaaggtggagtGGCTGGAGTACCTGAAAAAGGT
CCGGATACTTTTTGAGCAACGCGCTCCCagtggggaaggggcagtcCTGT
GGACAGACGAGGCAGGGTTGGTGCTTTTGCTGATGTGCTGCTTGCAAAGA
CAGGTGCTGGGGCACCTGGACGCGGGGACTGTGAGGGCCTTGGAGCGGat
catggcggaggagctgccgAGGGCTGCGGGGTGGCGGAagttgaggaggg
aggtcgaggccCTGACGCAGCATGCAGACGTGCGGACGGTGGCAGAAGCA
TTTGCAGAGGCACATATGACAGCTCaaaggagggtgaagggggtagagag
ggagggggacggcggaaggggggagttcgggcaaggaggcgtcACGTCAC
CTTCcatggggaaagaggggctggcACTGAACGAGGAGGTGAATCGGGTG
TATAAGCGATGCTCGGATGTACTTGCTCATGCCATCAATTACGCGCAGAA
AAAGCAGCAGATTGCTAAGCTTACGAATTCCGCagacgaggcgggggatA
TTGCCAGAAGTCGCTCACAGACAAATGTGAGCCGTAGGAGATGA
back to top

Coding sequence (CDS) from alignment at CM002460.1:933221..935164+

>rna3181 ID=rna3181|Name=rna3181|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002460.1:933221..935164+ (Nannochloropsis gaditana)
ATGGCCCCTCACGCGGACCTCTTCCTGGCAGAGCTTTTTGGAGGCGTCGT
GAACaaagcaagggaaggaacgcTGGTCCAAATTCACCAGAGTGCCTTGG
CACGGGTGAGTGGCTTGCGCGAGGCAAAAATACACGATTTGGTTCATTTT
TCCCAGCCGGATGGGTCCTTTACGCAAGGGCTGGTAGTGGATCTGGAACA
AAACACGGTGGCTGTCGCCCTCTTGGACAAGACAATGCCCGTGGAAGGCG
CCCACGCGGTCTTGGCGGACACAGCGCTCAGCATGCCGGTGGGTCCGTCT
TTGCTGGGACGCGTCGTCGATCCTTTGGGGAGGCCGTTGCCTGATCTGGA
ACCCGCTATGGCCACAAAGCAAGTAGACTCCACAGAGTCTCCATCGGACC
GCACAAACACaaagagctcctcctcttcctccgcttcccttccttccact
cccaTCATGAGCAGCCAGCGCCGGGCGCCCGGGATCATGGCGCGAAAACC
CCTGTGCCACCGGCTGCGCACAGGGGTCAAGGTTCTGGacgtcttccacc
ccctcggccacggccagaGCGTGGGACTCTTCGGAAGGCCCGGGAGCGGG
AAGTCAACGCTGGCCCTGCAGATCATCGCCAACCAGAACACGGCGGCGCC
TGTCCCTTCCCCGACCGCCCCACTGCACTGCGTCTATGTCGCCATTGGCC
AGGAGCCCCGGGCAGTCCAAGAGGCCGTGGGTGAACTCATCCGCCGTGCC
TGCTTTCAGCACGTTACAGTAGTCGCCGCCACACAGGACATGCCCCCCGG
GCTTCGGTTTCTGGCCCCCTTCGCGGGCTGTGCTCAGGGAGAGTATTGGC
GGGATCAGGGGGGACGAGTCCTGGTGGTCTGCGATGACCTGTCTAGGCAT
GCGGCGGCTTATTCGGAGATGGCCAAATTCATGCAGAAGCCTGAGGTGGA
GCATGGGCTGGCTCTGCACGGACCTTTGTTGGAGAGGTGCGCGCAGATGT
CTGAtgccaagggaggaggtgcgatGACGGGtttggtggtggtggagggg
gaggtgacaagcgggcaggagggaggggtggggggagggaaggaggacgg
gggtcACGGCCTGGCGCATCGAATCAATTCCCTGGTCGACCATGCCATCA
CCTTGAACGTCGGCCTCGCGCAACGGCGGGTGTTTCCGGCCGTAGACGTG
ACGCAACAGATGAATTTGCCCTCCGCGGGcgccgcccttctccctgaACC
CGCTAAATGGTGCGTACAGCAACTGAGGATGATGTgggcggaggccctgg
acaaggaggcgggcgcgAAGTTGGCAGAAAGATTGGGAAtccaggcggtg
gaggagggggaagaagggaaggtggagtGGCTGGAGTACCTGAAAAAGGT
CCGGATACTTTTTGAGCAACGCGCTCCCagtggggaaggggcagtcCTGT
GGACAGACGAGGCAGGGTTGGTGCTTTTGCTGATGTGCTGCTTGCAAAGA
CAGGTGCTGGGGCACCTGGACGCGGGGACTGTGAGGGCCTTGGAGCGGat
catggcggaggagctgccgAGGGCTGCGGGGTGGCGGAagttgaggaggg
aggtcgaggccCTGACGCAGCATGCAGACGTGCGGACGGTGGCAGAAGCA
TTTGCAGAGGCACATATGACAGCTCaaaggagggtgaagggggtagagag
ggagggggacggcggaaggggggagttcgggcaaggaggcgtcACGTCAC
CTTCcatggggaaagaggggctggcACTGAACGAGGAGGTGAATCGGGTG
TATAAGCGATGCTCGGATGTACTTGCTCATGCCATCAATTACGCGCAGAA
AAAGCAGCAGATTGCTAAGCTTACGAATTCCGCagacgaggcgggggatA
TTGCCAGAAGTCGCTCACAGACAAATGTGAGCCGTAGGAGATGA
back to top
Synonyms
Publications