rna3180, rna3180 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3180
Unique Name	rna3180
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	702
Alignment location	CM002460.1:931062..932582 +

Link to JBrowse

Properties


Property Name	Value
Product	Putative thiol-disulfide oxidoreductase DCC
Orig transcript id	gnl\|cribi\|Naga_100099g6.8537.mrna
Orig protein id	gnl\|cribi\|Naga_100099g6.8537
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:931062..932582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100099g6	gene3057	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3180	rna3180-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27501.1	cds3172	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:931062..932582+
coding sequence from alignment at CM002460.1:931062..932582+

mRNA sequence

>rna3180 ID=rna3180|Name=rna3180|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
ATGTACAAAGCGGGTAGAGGATTGCGTTACATTTCGGGTGTGCCTGCCGT
GATTCGCAGTCGTAATTTCCCTCCGCCTCGCCGTCTTCGTGCTCATGATG
GGTCTAAGACAAGGAACTGCAACCACGTTGTCTCTCCTTTTCTTCAGCGC
AGTGCTGTCACATGCCTTCGTTCTGCCCAGTTGGGGGCTCAATGGTCATT
TGAGAATTCCAACGAGATGTGGCAAGGGCAAGGTTGCGACCAGAATGATG
CTGTTACCGCCCGAAGCCCCTCAATCCTTCATCTGCACCTCGACGAACCT
CATGATTGCAGCTTCTCGATACATCAAAGATGTACCGTCCACCCTGACGG
ACATGGCGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTGCTTACACC
AATCCCGACGGGTCGTATACGAACGCGGGGGAGGTGGTGGAGTCTACAAC
GGCGTCAATACCGAGCTTCCTCCTCCGTACTATGCCGTGGCATTTGCCCT
CGTTCTATTGGTGGTGTCCGGCATTCAGCAACTCTCCCTGGGGAATGTGT
TTGATGACGAAGAGAAGTCTGCCTCGTCGAGTGGGGCCGTGGCCCGTCGA
ATGAACATGCGGAATAGAAGTTTCTTCAAGAAGAAGGTCCAGTCAATAAA
GAGGAGCAAGAAATTTGAACTTTTGATGCAACAGGATAACGAAACCATAT
GA

protein sequence of rna3180

>rna3180-protein ID=rna3180-protein|Name=rna3180|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MARGLLRGIWALSSATSAASFVVPVFRHAGGVARGAPLSRSMARGIGSGL
SSPWDVVSAIPSRSLSSLKATSVGSTTTSTAPDSDVKPWKINLLYDGKCS
LCMKEVTFLQKRDVDGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLP
DGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQI
TGRPDLEVILKQRQEELKKKDFSCDDEGECEIDWDKL

mRNA from alignment at CM002460.1:931062..932582+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3180 ID=rna3180|Name=rna3180|organism=Nannochloropsis gaditana|type=mRNA|length=1521bp|location=Sequence derived from alignment at CM002460.1:931062..932582+ (Nannochloropsis gaditana)
ATGGCTCGAGGGCTGTTGAGAGGAATCTGGGCGCTGTCATCGGCAACGTC
TGCCGCGTCTTTTGTGTAAGTTAGCATGAAATTTTTACAGAGTATGGCAG
GGatgagggagcgagggcccTGGCATTTCACCAGCACAATTCCATTTCCC
CTGTTCAACAAACCTCTTGCGCAGCGTACCCGTATTCCGGCATGCGGGAG
GTGTGGCACGCGGGGCTCCACTGTCTCGTTCCATGGCCCGTGGAATTGGC
AGTGGCCTCAGTTCTCCGTGGGACGTGGTGTCGGCCATTCCGTCACgttc
cttgtcctccctaaAAGCCACCTCCGTGGGCTCTACCACAACCAGTACCG
CGCCTGACAGCGACGTGAAACCCTGGAAGATAAACTTGCTCTACGACGGC
AAATGCTCTCTGTGCATGAAGGTATGTGAGATCGTTGTCCTTGGTGAGGC
TCTGTTGGCCCTGGTATCCCGTGTGAGGCTGTTGGCTGGGTGCACGATAG
TTGCAGTGCTCTATGGAGGCAAACATGCATGTGTCTTGTAATGGACTTGT
CGATGATGTCCTGAACCTGCACCCTGTTTTGATCGCCTGACCTTTCTCTG
GCATTTTGGCCTATCCGGTCTCTTGGTCCCTCTTTTTTACCATGTCAACG
CTACCACCAGGAAGTGACATTTTTGCAAAAACGAGACGTGGATGGCAACA
TCCTCTTCACGGATCTGAATGACCCCAACTTCAAGGCAGAAGAAAACGGG
GGGGTGGATTATGAAGCAGGTAGGAAGAGCGGAAGAGAGGGTAAAAGTTA
GGGCTTGGGTATTTACTTTGGGTGGTTGTTTGGGTAGTCCAGAAGGAATC
AAAGTGCGAGAGAAGTTGGTCGTCGGGTGTGCTGCCTGGAGTGGCCGGCT
GTGAACTCAGAAGGGATGTGAAGGGACGCGAGTGACAGGGAAtggcgggc
ggagggcctCGTGAGAAGAACCGGTGTGGGGAACAGACATTGACGACGAC
TCTTATTGCCAGGCATGAAGTATATCCACGCGGTTTTACCcgacggggag
gtggtgaagggtGTGGAAGTCTTCAGACGCGTCTACGAAGTTATCGGCCT
AGGGTGGGTCTATGCTGCCACCAAGATCCCCTTTATCGGCGCCGCTGCGG
GTACGTAGCATTGATTTGAATGCCTTCGTTACTGAGCATTTGTTTGTTAT
TGGTGAATATACAGGCGCACGAACGCCTCTTGCCTAGGTCCGCGGTGCTC
TAGCCTGACCGGACAGTGTTGTACTCCAAAACATGCATGGTTTTCCTGAC
TATCTTCTTCTATGCCTGATGCACTTCTCATCCTTGCTTGCATTTCTTCA
ATATTGACGTTGCCAGACTGGGCCTATGACCAATGGGCTATCCGTCGCCT
CCAAATCACTGGCCGACCGGACTTAGAGGTGATATTGAAGCAGCGTCAAG
AGGAGCTCAAGAAAAAAGACTTTTCGTGTGATGACGAAGGGGAATGCGAA
ATTGATTGGGATAAGCTGTAG

Coding sequence (CDS) from alignment at CM002460.1:931062..932582+

>rna3180 ID=rna3180|Name=rna3180|organism=Nannochloropsis gaditana|type=CDS|length=3570bp|location=Sequence derived from alignment at CM002460.1:931062..932582+ (Nannochloropsis gaditana)
ATGGCTCGAGGGCTGTTGAGAGGAATCTGGGCGCTGTCATCGGCAACGTC
TGCCGCGTCTTTTGTCGTACCCGTATTCCGGCATGCGGGAGGTGTGGCAC
GCGGGGCTCCACTGTCTCGTTCCATGGCCCGTGGAATTGGCAGTGGCCTC
AGTTCTCCGTGGGACGTGGTGTCGGCCATTCCGTCACgttccttgtcctc
cctaaAAGCCACCTCCGTGGGCTCTACCACAACCAGTACCGCGCCTGACA
GCGACGTGAAACCCTGGAAGATAAACTTGCTCTACGACGGCAAATGCTCT
CTGTGCATGAAGGAAGTGACATTTTTGCAAAAACGAGACGTGGATGGCAA
CATCCTCTTCACGGATCTGAATGACCCCAACTTCAAGGCAGAAGAAAACG
GGGGGGTGGATTATGAAGCAGGCATGAAGTATATCCACGCGGTTTTACCc
gacggggaggtggtgaagggtGTGGAAGTCTTCAGACGCGTCTACGAAGT
TATCGGCCTAGGGTGGGTCTATGCTGCCACCAAGATCCCCTTTATCGGCG
CCGCTGCGGACTGGGCCTATGACCAATGGGCTATCCGTCGCCTCCAAATC
ACTGGCCGACCGGACTTAGAGGTGATATTGAAGCAGCGTCAAGAGGAGCT
CAAGAAAAAAGACTTTTCGTGTGATGACGAAGGGGAATGCGAAATTGATT
GGGATAAGCTGTAGATGGCTCGAGGGCTGTTGAGAGGAATCTGGGCGCTG
TCATCGGCAACGTCTGCCGCGTCTTTTGTCGTACCCGTATTCCGGCATGC
GGGAGGTGTGGCACGCGGGGCTCCACTGTCTCGTTCCATGGCCCGTGGAA
TTGGCAGTGGCCTCAGTTCTCCGTGGGACGTGGTGTCGGCCATTCCGTCA
CgttccttgtcctccctaaAAGCCACCTCCGTGGGCTCTACCACAACCAG
TACCGCGCCTGACAGCGACGTGAAACCCTGGAAGATAAACTTGCTCTACG
ACGGCAAATGCTCTCTGTGCATGAAGGAAGTGACATTTTTGCAAAAACGA
GACGTGGATGGCAACATCCTCTTCACGGATCTGAATGACCCCAACTTCAA
GGCAGAAGAAAACGGGGGGGTGGATTATGAAGCAGGCATGAAGTATATCC
ACGCGGTTTTACCcgacggggaggtggtgaagggtGTGGAAGTCTTCAGA
CGCGTCTACGAAGTTATCGGCCTAGGGTGGGTCTATGCTGCCACCAAGAT
CCCCTTTATCGGCGCCGCTGCGGACTGGGCCTATGACCAATGGGCTATCC
GTCGCCTCCAAATCACTGGCCGACCGGACTTAGAGGTGATATTGAAGCAG
CGTCAAGAGGAGCTCAAGAAAAAAGACTTTTCGTGTGATGACGAAGGGGA
ATGCGAAATTGATTGGGATAAGCTGTAGATGGCTCGAGGGCTGTTGAGAG
GAATCTGGGCGCTGTCATCGGCAACGTCTGCCGCGTCTTTTGTCGTACCC
GTATTCCGGCATGCGGGAGGTGTGGCACGCGGGGCTCCACTGTCTCGTTC
CATGGCCCGTGGAATTGGCAGTGGCCTCAGTTCTCCGTGGGACGTGGTGT
CGGCCATTCCGTCACgttccttgtcctccctaaAAGCCACCTCCGTGGGC
TCTACCACAACCAGTACCGCGCCTGACAGCGACGTGAAACCCTGGAAGAT
AAACTTGCTCTACGACGGCAAATGCTCTCTGTGCATGAAGGAAGTGACAT
TTTTGCAAAAACGAGACGTGGATGGCAACATCCTCTTCACGGATCTGAAT
GACCCCAACTTCAAGGCAGAAGAAAACGGGGGGGTGGATTATGAAGCAGG
CATGAAGTATATCCACGCGGTTTTACCcgacggggaggtggtgaagggtG
TGGAAGTCTTCAGACGCGTCTACGAAGTTATCGGCCTAGGGTGGGTCTAT
GCTGCCACCAAGATCCCCTTTATCGGCGCCGCTGCGGACTGGGCCTATGA
CCAATGGGCTATCCGTCGCCTCCAAATCACTGGCCGACCGGACTTAGAGG
TGATATTGAAGCAGCGTCAAGAGGAGCTCAAGAAAAAAGACTTTTCGTGT
GATGACGAAGGGGAATGCGAAATTGATTGGGATAAGCTGTAGATGGCTCG
AGGGCTGTTGAGAGGAATCTGGGCGCTGTCATCGGCAACGTCTGCCGCGT
CTTTTGTCGTACCCGTATTCCGGCATGCGGGAGGTGTGGCACGCGGGGCT
CCACTGTCTCGTTCCATGGCCCGTGGAATTGGCAGTGGCCTCAGTTCTCC
GTGGGACGTGGTGTCGGCCATTCCGTCACgttccttgtcctccctaaAAG
CCACCTCCGTGGGCTCTACCACAACCAGTACCGCGCCTGACAGCGACGTG
AAACCCTGGAAGATAAACTTGCTCTACGACGGCAAATGCTCTCTGTGCAT
GAAGGAAGTGACATTTTTGCAAAAACGAGACGTGGATGGCAACATCCTCT
TCACGGATCTGAATGACCCCAACTTCAAGGCAGAAGAAAACGGGGGGGTG
GATTATGAAGCAGGCATGAAGTATATCCACGCGGTTTTACCcgacgggga
ggtggtgaagggtGTGGAAGTCTTCAGACGCGTCTACGAAGTTATCGGCC
TAGGGTGGGTCTATGCTGCCACCAAGATCCCCTTTATCGGCGCCGCTGCG
GACTGGGCCTATGACCAATGGGCTATCCGTCGCCTCCAAATCACTGGCCG
ACCGGACTTAGAGGTGATATTGAAGCAGCGTCAAGAGGAGCTCAAGAAAA
AAGACTTTTCGTGTGATGACGAAGGGGAATGCGAAATTGATTGGGATAAG
CTGTAGATGGCTCGAGGGCTGTTGAGAGGAATCTGGGCGCTGTCATCGGC
AACGTCTGCCGCGTCTTTTGTCGTACCCGTATTCCGGCATGCGGGAGGTG
TGGCACGCGGGGCTCCACTGTCTCGTTCCATGGCCCGTGGAATTGGCAGT
GGCCTCAGTTCTCCGTGGGACGTGGTGTCGGCCATTCCGTCACgttcctt
gtcctccctaaAAGCCACCTCCGTGGGCTCTACCACAACCAGTACCGCGC
CTGACAGCGACGTGAAACCCTGGAAGATAAACTTGCTCTACGACGGCAAA
TGCTCTCTGTGCATGAAGGAAGTGACATTTTTGCAAAAACGAGACGTGGA
TGGCAACATCCTCTTCACGGATCTGAATGACCCCAACTTCAAGGCAGAAG
AAAACGGGGGGGTGGATTATGAAGCAGGCATGAAGTATATCCACGCGGTT
TTACCcgacggggaggtggtgaagggtGTGGAAGTCTTCAGACGCGTCTA
CGAAGTTATCGGCCTAGGGTGGGTCTATGCTGCCACCAAGATCCCCTTTA
TCGGCGCCGCTGCGGACTGGGCCTATGACCAATGGGCTATCCGTCGCCTC
CAAATCACTGGCCGACCGGACTTAGAGGTGATATTGAAGCAGCGTCAAGA
GGAGCTCAAGAAAAAAGACTTTTCGTGTGATGACGAAGGGGAATGCGAAA
TTGATTGGGATAAGCTGTAG

Synonyms

Publications