EWM27501.1, cds3172 (CDS) Nannochloropsis gaditana

Overview
NameEWM27501.1
Unique Namecds3172
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:931062..931126 +
Alignment locationCM002460.1:931236..931482 +
Alignment locationCM002460.1:931722..931830 +
Alignment locationCM002460.1:932074..932211 +
Alignment locationCM002460.1:932428..932582 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27501.1
ProductPutative thiol-disulfide oxidoreductase DCC
Orig transcript idgnl|cribi|Naga_100099g6.8537.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:931062..931126 +
CM002460.1supercontigCM002460.1:931236..931482 +
CM002460.1supercontigCM002460.1:931722..931830 +
CM002460.1supercontigCM002460.1:932074..932211 +
CM002460.1supercontigCM002460.1:932428..932582 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007263DUF393
Homology
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|585109765|gb|EWM27501.1| (Putative thiol-disulfide oxidoreductase DCC [Nannochloropsis gaditana])

HSP 1 Score: 484.952 bits (1247), Expect = 2.374e-173
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MARGLLRGIWALSSATSAASFVVPVFRHAGGVARGAPLSRSMARGIGSGLSSPWDVVSAIPSRSLSSLKATSVGSTTTSTAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDVDGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEIDWDKL 237
            MARGLLRGIWALSSATSAASFVVPVFRHAGGVARGAPLSRSMARGIGSGLSSPWDVVSAIPSRSLSSLKATSVGSTTTSTAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDVDGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEIDWDKL
Sbjct:    1 MARGLLRGIWALSSATSAASFVVPVFRHAGGVARGAPLSRSMARGIGSGLSSPWDVVSAIPSRSLSSLKATSVGSTTTSTAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDVDGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEIDWDKL 237          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|873218433|emb|CEM39536.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 185.267 bits (469), Expect = 3.189e-55
Identity = 84/142 (59.15%), Postives = 107/142 (75.35%), Query Frame = 0
Query:   89 WKINLLYDGKCSLCMKEVTFLQKRDVDGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDF---SCDDE 227
            W+I+LLYDG+C LC+KE+ FL+KRD +G I FTDL  P +K EE+G VD+E GM+ IHAV   G+V+ GVEVFRRVYE IGLGWVYAATK+P IG A D AYD WA  RL++TGRPDL  ++++R  +L+ K      C+DE
Sbjct:   60 WQIDLLYDGECPLCLKEIDFLKKRDTEGKIQFTDLASPGYKQEEHGNVDFERGMRSIHAVTSSGDVISGVEVFRRVYEAIGLGWVYAATKLPVIGPAVDVAYDIWASNRLRLTGRPDLAKVMEERAAKLRDKSAYPQGCEDE 201          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1210088909|dbj|BAY08045.1| (hypothetical protein NIES2098_11720 [Calothrix sp. NIES-2098])

HSP 1 Score: 180.644 bits (457), Expect = 3.391e-54
Identity = 88/155 (56.77%), Postives = 107/155 (69.03%), Query Frame = 0
Query:   80 TAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDV-DGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEID 233
            T P S    WKI LLYDG+C LCM+EV FLQKRD   G + F D+ D N+  E +GGVD+E  M  IHAVLPDG VV+ VEVFRRVYE++G+GW+Y+ TK+P +GA AD+ Y  WA  RL ITGRP LE ++ QRQE L      C+ EG C ID
Sbjct:   18 TQPVSTAPSWKIELLYDGECPLCMREVNFLQKRDAGRGLVKFVDIADDNYNPEAHGGVDFETAMGRIHAVLPDGTVVQNVEVFRRVYEILGMGWIYSVTKLPIVGAIADFLYGIWAKWRLAITGRPKLEDVVAQRQERL------CNTEGRCRID 166          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1197919035|ref|WP_086836717.1| (DUF393 domain-containing protein [Nostoc sp. RF31Y] >gi|1195997626|gb|OUL20030.1| thiol-disulfide oxidoreductase [Nostoc sp. RF31Y])

HSP 1 Score: 177.948 bits (450), Expect = 4.583e-53
Identity = 89/155 (57.42%), Postives = 106/155 (68.39%), Query Frame = 0
Query:   80 TAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDVD-GNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEID 233
            T P S    WKI LLYDG+C LCM+EV FLQKRD   G + F D+ D ++  E +GGVD+E  M  IHAVLPDG VV+ VEVFRRVY ++G+GWVYA T++P IGA AD+ Y  WA  RL ITGRP LE I+ QRQE L      C+ EG C ID
Sbjct:   16 TQPVSTAPSWKIELLYDGECPLCMREVNFLQKRDAGRGLVKFVDIADDDYNPEAHGGVDFETAMGRIHAVLPDGTVVQNVEVFRRVYAILGMGWVYAITQLPIIGAIADFLYGVWAKWRLAITGRPKLEDIVAQRQERL------CNTEGRCRID 164          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1210101759|dbj|BAY20889.1| (hypothetical protein NIES2100_06330 [Calothrix sp. NIES-2100])

HSP 1 Score: 177.178 bits (448), Expect = 6.895e-53
Identity = 88/170 (51.76%), Postives = 117/170 (68.82%), Query Frame = 0
Query:   65 LSSLKATSVGSTTTSTAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDVD-GNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEID 233
            +SS+ ++ + + + STAP      WKI LLYDG+C LCM+EV FLQKRD   G + F D+ D ++  EE+GGVD+E  M  IHAVL DG VV+ VEVFRRVY ++G+GWVY+ TK+P +GA AD+ Y  WA  RL ITGRP LE ++++RQE L      C+ +G C ID
Sbjct:    1 MSSI-SSEILTQSASTAP-----AWKIELLYDGECPLCMREVNFLQKRDAGRGLVHFVDIADDDYNPEEHGGVDFETAMGRIHAVLADGTVVQNVEVFRRVYAILGMGWVYSVTKLPIVGAIADFLYGIWAKWRLAITGRPTLETVVQERQERL------CNTQGRCRID 158          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1210162651|dbj|BAY81732.1| (hypothetical protein NIES267_12090 [Calothrix parasitica NIES-267])

HSP 1 Score: 176.792 bits (447), Expect = 1.019e-52
Identity = 81/163 (49.69%), Postives = 114/163 (69.94%), Query Frame = 0
Query:   75 STTTSTAPDSDV---KPWKINLLYDGKCSLCMKEVTFLQKRDVD-GNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEID 233
            +++TST  +S+    + W+I LLYDG+C LC++EV FLQK+D   G + F D+   ++  EEN G+D+E  M  IH +L DG V+K VEVFRRVYE +G+GWVYA TK+P +GA A++ Y  WA  RL++TGRPDL+ ++KQRQE+L      C+DE  C +D
Sbjct:    2 TSSTSTINNSNQTLNQTWEIKLLYDGECPLCLREVNFLQKKDAGRGKVAFVDIASDDYNPEENAGIDFETAMGRIHGILADGTVIKNVEVFRRVYETLGMGWVYAITKLPILGALANFVYGIWADLRLKLTGRPDLQTVIKQRQEKL-----GCNDESRCRVD 159          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1210177141|dbj|BAY96201.1| (hypothetical protein NIES37_01280 [Tolypothrix tenuis PCC 7101] >gi|1210254290|dbj|BAZ73292.1| hypothetical protein NIES50_18560 [Aulosira laxa NIES-50])

HSP 1 Score: 177.563 bits (449), Expect = 1.185e-52
Identity = 84/165 (50.91%), Postives = 114/165 (69.09%), Query Frame = 0
Query:   69 KATSVGSTTTSTAPDSDVKP-WKINLLYDGKCSLCMKEVTFLQKRDV-DGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECE 231
            K +   + T S + D+   P W+I LLYDG+C LCM+EV FLQKRD   G + F D+ + N+  E +GGVDYE  M  IHAVLPDG +VK +EVFRR+YE++G+GWVY+ TK+P IGA AD+ Y  WA  RL +TGRP+L+ I+ QRQ+++     +C+ EG C 
Sbjct:   30 KLSMSSANTQSYSYDAVTSPSWQIELLYDGECPLCMREVNFLQKRDAGRGLVNFVDIANDNYNPEAHGGVDYETAMGRIHAVLPDGTLVKNIEVFRRIYEILGMGWVYSLTKLPVIGAIADFLYGIWANWRLAVTGRPNLKTIITQRQQKI-----ACNTEGRCR 189          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1197741085|ref|WP_086690854.1| (DUF393 domain-containing protein [Nostoc sp. T09] >gi|1195999359|gb|OUL21699.1| thiol-disulfide oxidoreductase [Nostoc sp. T09])

HSP 1 Score: 176.792 bits (447), Expect = 1.246e-52
Identity = 88/155 (56.77%), Postives = 107/155 (69.03%), Query Frame = 0
Query:   80 TAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDV-DGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEID 233
            T P S    WKI LLYD +C LCM+EV FLQKRD   G + F D+ D ++  E +GGVD+E  M  IHAVLP+G VV+ VEVFRRVYE++G+GWVYA T++P IGA AD+ Y  WA  RL ITGRP LE I+ QRQE L     +C+ EG C ID
Sbjct:   16 TPPVSTAPVWKIELLYDSECPLCMREVNFLQKRDAGRGLVKFVDIADDDYNPEAHGGVDFETAMGRIHAVLPNGTVVQNVEVFRRVYEILGMGWVYAITQLPIIGAIADFLYGVWAKWRLAITGRPKLEDIVAQRQERL-----ACNTEGRCRID 165          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|1197832525|ref|WP_086767018.1| (DUF393 domain-containing protein [Nostoc sp. 106C] >gi|1195999162|gb|OUL21510.1| thiol-disulfide oxidoreductase [Nostoc sp. 106C])

HSP 1 Score: 176.407 bits (446), Expect = 1.469e-52
Identity = 88/155 (56.77%), Postives = 105/155 (67.74%), Query Frame = 0
Query:   80 TAPDSDVKPWKINLLYDGKCSLCMKEVTFLQKRDV-DGNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGECEID 233
            T P S    WKI LLYD +C LCM+EV FLQKRD   G + F D+ D ++  E +GGVD+E  M  IHAVLPDG VV+ VEVFRRVY ++G+GWVYA T++P IGA AD+ Y  WA  RL ITGRP LE I+ QRQE L      C+ EG C ID
Sbjct:   16 TQPVSSAHTWKIELLYDSECPLCMREVNFLQKRDAGRGLVKFVDIADDDYNPEAHGGVDFETAMGRIHAVLPDGTVVQNVEVFRRVYAILGMGWVYAITQLPIIGAIADFLYGVWAKWRLAITGRPKLEDIVAQRQERL------CNTEGRCRID 164          
BLAST of EWM27501.1 vs. NCBI_GenBank
Match: gi|797208337|ref|WP_045869288.1| (DUF393 domain-containing protein [Tolypothrix sp. PCC 7601] >gi|1210174771|dbj|BAY93846.1| hypothetical protein NIES3275_58900 [Fremyella diplosiphon NIES-3275])

HSP 1 Score: 176.022 bits (445), Expect = 1.962e-52
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 0
Query:   75 STTTSTAPDSDVKP-WKINLLYDGKCSLCMKEVTFLQKRDVD-GNILFTDLNDPNFKAEENGGVDYEAGMKYIHAVLPDGEVVKGVEVFRRVYEVIGLGWVYAATKIPFIGAAADWAYDQWAIRRLQITGRPDLEVILKQRQEELKKKDFSCDDEGEC 230
            + T S + D+   P W+I LLYD +C LCM+EV FLQKRD   G + F D+ D N+  E +GGVDYE  M  IHAVLPDG VVK +EVFRR+YE++G+GWVY+ TK+P IGA AD+ Y  WA  RL +TGRP+L+ I+ QRQ+++     +C+ EG C
Sbjct:    4 ANTQSYSYDAVTSPSWQIELLYDSECPLCMREVNFLQKRDAGRGLVNFVDIADDNYNPEVHGGVDYETAMGRIHAVLPDGTVVKNIEVFRRIYEILGMGWVYSLTKLPIIGAIADFLYGIWANWRLAVTGRPNLKTIIAQRQQKI-----ACNTEGRC 156          
The following BLAST results are available for this feature:
BLAST of EWM27501.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109765|gb|EWM27501.1|2.374e-173100.00Putative thiol-disulfide oxidoreductase DCC [Nanno... [more]
gi|873218433|emb|CEM39536.1|3.189e-5559.15unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210088909|dbj|BAY08045.1|3.391e-5456.77hypothetical protein NIES2098_11720 [Calothrix sp.... [more]
gi|1197919035|ref|WP_086836717.1|4.583e-5357.42DUF393 domain-containing protein [Nostoc sp. RF31Y... [more]
gi|1210101759|dbj|BAY20889.1|6.895e-5351.76hypothetical protein NIES2100_06330 [Calothrix sp.... [more]
gi|1210162651|dbj|BAY81732.1|1.019e-5249.69hypothetical protein NIES267_12090 [Calothrix para... [more]
gi|1210177141|dbj|BAY96201.1|1.185e-5250.91hypothetical protein NIES37_01280 [Tolypothrix ten... [more]
gi|1197741085|ref|WP_086690854.1|1.246e-5256.77DUF393 domain-containing protein [Nostoc sp. T09] ... [more]
gi|1197832525|ref|WP_086767018.1|1.469e-5256.77DUF393 domain-containing protein [Nostoc sp. 106C]... [more]
gi|797208337|ref|WP_045869288.1|1.962e-5253.16DUF393 domain-containing protein [Tolypothrix sp. ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3180rna3180Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications