rna3179, rna3179 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3179
Unique Name	rna3179
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1378
Alignment location	CM002460.1:929287..930659 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100099g5.8526.mrna
Orig protein id	gnl\|cribi\|Naga_100099g5.8526
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:929287..930659 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100099g5	gene3056	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3179	rna3179-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27490.1	cds3171	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:929287..930659+
coding sequence from alignment at CM002460.1:929287..930659+

mRNA sequence

>rna3179 ID=rna3179|Name=rna3179|organism=Nannochloropsis gaditana|type=mRNA|length=1378bp
GAGTGTGCAAAGTACAAGTAGCCTTGTCGCCAACCAGAAAAGTTTCCCAG
ACAGTGATATCTTACGGGACCGTGCGGGGTGGAAACTGACGAAGAAAGGC
TCGCCTGGGACTCACGTCGTCACATATCCATTTTACCGCAATATTTGTGG
TTTTATCACCGCTTTGTACATGAAGGCACGTTTCTAAGGATCTCTTTTAC
GCGACCCCATCAAATTCATAGGGCCACCATGCCACCCAAGGGTGTTCACG
CGAAAAAGGCGGCGGCCATGGAAAAGAAGGCCGCTAATGAGAGCGTGAAG
GCGAGTCTGAAAGCAGCAGCACTCGAGGCTCAAGAAGCGGCAGGTTGGTG
CGATGGTGCAGATCTTAGGACAGCAAAACGGAAGGAAGAGGAAGAAAGGA
AAGCACAAGCAAGAGATGCCAAGAAAGCAGAGCTGAAGGCGTTGGAAGAG
CAGGAAAACGCCATGGCAGCTTCCGTGAAGATAAAGCCCAAAAAGGTAGT
AAATTCCAAACAAGCAGCAAAGAGCAATGAATTGAAGGAATTGGAAGCAC
AACTTAAGGCAATGGAGCTGGAGAAAAAAAAGAAGGAAGAGAAGAAAAAG
GCAGCCATTGCAGACGCGGGGAAGAAAGGAAAGAAGAGTAGTGGAAAGAA
AGGAGGGAAAGACGAGCTCTCCGACGACGAAAGCTTGCCTCCCTTGGAAG
CCAATGTGAACAGGCAGATGGCGAATGTTGAGGTTGCGCGTGGTTTGGAT
CAAGCCATTGATTTAATGGGTAGCAGTCGTGGGGGAACCGGGGGCGACGA
TGCCCATCCGGAAAAAAGGCAAAAAGCCGCGTATAAAGCCTTTGAGGAAC
GCATGCTGGCCGAGTTGAAGGAGGAGATGCCAGGCATGCGTCTTTCACAA
TACAAGGATCGAATCTTTGAAATGTGGAAGAAGAGTCCAGAAAACCCCAT
GGTGGCAGCAAGGGTGGCGGCGGGTATGGATGCTGGCGTTGGGAAGTCCC
GAGGATGGTAGGATAGGAACGGAGAGCTTGATTTCGCTACAATTGTTGTG
AGGGACTTTGCTGAGGGACTTTGCTCTCATCCCGTCACCTAGCTATTCTG
GGAATCATGTAATCCTCCGCAGAGAAATCATAAGGCGAGCAATAGTCTTC
GAAGCAGCCCTCGTTCAATGCTTTTCTACTCCTGTTTTGGATTATCATCT
TCTTTGCCTCCGTGCGGACCACACGCTAAAAACGCTCAAACATTTTCTAG
CATACTTGTTCTCAGCCTCCGTCTATTTGATAGATAAATGCTGTTTGATA
GACATGGAAATCATCCCTGTATCCAATCCGACCAAACGACACACCAGCTG
CTCGTTCTTCACGAACAGAAACAAGGGC

protein sequence of rna3179

>rna3179-protein ID=rna3179-protein|Name=rna3179|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MYKAGRGLRYISGVPAVIRSRNFPPPRRLRAHDGSKTRNCNHVVSPFLQR
SAVTCLRSAQLGAQWSFENSNEMWQGQGCDQNDAVTARSPSILHLHLDEP
HDCSFSIHQRCTVHPDGHGGRSRGCGGLHACLHQSRRVVYERGGGGGVYN
GVNTELPPPYYAVAFALVLLVVSGIQQLSLGNVFDDEEKSASSSGAVARR
MNMRNRSFFKKKVQSIKRSKKFELLMQQDNETI

mRNA from alignment at CM002460.1:929287..930659+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3179 ID=rna3179|Name=rna3179|organism=Nannochloropsis gaditana|type=mRNA|length=1373bp|location=Sequence derived from alignment at CM002460.1:929287..930659+ (Nannochloropsis gaditana)
ATGTACAAAGCGGTGATAAAACCACAAATATTGCGGTAAAATGGATATGT
GACGACGTGAGTCCCAGGCGAGCCTTTCTTCGTCAGTTTCCACCCCGCAC
GGTCCCGTAAGATATCACTGTCTGGGAAACTTTTCTGGTTGGCGACAAGG
CTACTTGTACTTTGCACACTCACGCAAAACTTTTCCTTTACTGCAGGGTA
GAGGATTGCGTTACATTTCGGGTGTGCCTGCCGTGATTCGCAGTCGTAat
ttccctccgcctcgccgtCTTCGTGCTCATGATGGGTCTAAGACAAGGAA
CTGCAACCACGttgtctctccttttcttcagcGCAGTGCTGTCACATGCC
TTCGTTCTGCCCAGTTGGGGGCTCAATGGTCATTTGAGAATTCCAACGAG
ATGTGGCAAGGGCAAGGTTGCGACCAGAATGATGCTGTTACCGCCCGAAG
CCCCTCAATCCTTCATCTGCACCTCGACGAACCTCATGGTACGCGCAGTC
GTGGATAGGAATACACACGTCCACCAGAAAGGGATAGGAGTAGCTTGGTG
TAAGGGCGGGTTTGGTTGCCACAATTTGCTGTGCCTTGCCAGTGCGTGAG
GAGcgttgtcgtcctcctcttcctccccccgtctaCCGCCTTCCAGACCC
TGCCGAAGGAAATGTGctcaccccctccatctcctctttcctgaGTAGAT
TGCAGCTTCTCGATACATCAAAGATGTACCGTCCACCCTGACGGACATGG
CGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTGCTTACACCAATCCC
GACGGGTCGTATACGaacgcgggggaggtggtggaggtaggTTGCACATC
TTGGCCTTGGGTGTGGCGGGGAAGCTCTCTAATCATCAACGTTGATACGA
TGCTCTGACTTCAGATGAAGTTTAAGTGATGGGGCTttgctctctctctc
tccctctcgctctcgTTTCTCGCTATTGCCTGCCCGTCTTGACCCGTATC
AAACCTTCATTTTCGTCTACAGGAAGTCTACAACGGCGTCAATAccgagc
ttcctcctccgtacTATGCCGTGGCATTTGCCCTCGTTCTATTGGTGGTG
TCCGGCATTCAGCAACTCTCCCTGGGGAATGTGTTTGATGACGAAGAGAA
GTCTGCCTCGTCGAGTGGGGCCGTGGCCCGTCGAATGAACATGCGGAATA
GAAGTTTCTTCAAGAAGAAGTAAACGAAAGCCAGGGGAAAGTGTGAGGGC
AGTTGCAACGCTTCATGTGTACATATGAAATAGCGATGCCAGCTTTAACA
ATGCAGGGTCCAGTCAATAAAGAGGAGCAAGAAATTTGAACTTTTGATGC
AACAGGATAACGAAACCATATGA

Coding sequence (CDS) from alignment at CM002460.1:929287..930659+

>rna3179 ID=rna3179|Name=rna3179|organism=Nannochloropsis gaditana|type=CDS|length=3510bp|location=Sequence derived from alignment at CM002460.1:929287..930659+ (Nannochloropsis gaditana)
ATGTACAAAGCGGGTAGAGGATTGCGTTACATTTCGGGTGTGCCTGCCGT
GATTCGCAGTCGTAatttccctccgcctcgccgtCTTCGTGCTCATGATG
GGTCTAAGACAAGGAACTGCAACCACGttgtctctccttttcttcagcGC
AGTGCTGTCACATGCCTTCGTTCTGCCCAGTTGGGGGCTCAATGGTCATT
TGAGAATTCCAACGAGATGTGGCAAGGGCAAGGTTGCGACCAGAATGATG
CTGTTACCGCCCGAAGCCCCTCAATCCTTCATCTGCACCTCGACGAACCT
CATGATTGCAGCTTCTCGATACATCAAAGATGTACCGTCCACCCTGACGG
ACATGGCGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTGCTTACACC
AATCCCGACGGGTCGTATACGaacgcgggggaggtggtggagTCTACAAC
GGCGTCAATAccgagcttcctcctccgtacTATGCCGTGGCATTTGCCCT
CGTTCTATTGGTGGTGTCCGGCATTCAGCAACTCTCCCTGGGGAATGTGT
TTGATGACGAAGAGAAGTCTGCCTCGTCGAGTGGGGCCGTGGCCCGTCGA
ATGAACATGCGGAATAGAAGTTTCTTCAAGAAGAAGGTCCAGTCAATAAA
GAGGAGCAAGAAATTTGAACTTTTGATGCAACAGGATAACGAAACCATAT
GAATGTACAAAGCGGGTAGAGGATTGCGTTACATTTCGGGTGTGCCTGCC
GTGATTCGCAGTCGTAatttccctccgcctcgccgtCTTCGTGCTCATGA
TGGGTCTAAGACAAGGAACTGCAACCACGttgtctctccttttcttcagc
GCAGTGCTGTCACATGCCTTCGTTCTGCCCAGTTGGGGGCTCAATGGTCA
TTTGAGAATTCCAACGAGATGTGGCAAGGGCAAGGTTGCGACCAGAATGA
TGCTGTTACCGCCCGAAGCCCCTCAATCCTTCATCTGCACCTCGACGAAC
CTCATGATTGCAGCTTCTCGATACATCAAAGATGTACCGTCCACCCTGAC
GGACATGGCGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTGCTTACA
CCAATCCCGACGGGTCGTATACGaacgcgggggaggtggtggagTCTACA
ACGGCGTCAATAccgagcttcctcctccgtacTATGCCGTGGCATTTGCC
CTCGTTCTATTGGTGGTGTCCGGCATTCAGCAACTCTCCCTGGGGAATGT
GTTTGATGACGAAGAGAAGTCTGCCTCGTCGAGTGGGGCCGTGGCCCGTC
GAATGAACATGCGGAATAGAAGTTTCTTCAAGAAGAAGGTCCAGTCAATA
AAGAGGAGCAAGAAATTTGAACTTTTGATGCAACAGGATAACGAAACCAT
ATGAATGTACAAAGCGGGTAGAGGATTGCGTTACATTTCGGGTGTGCCTG
CCGTGATTCGCAGTCGTAatttccctccgcctcgccgtCTTCGTGCTCAT
GATGGGTCTAAGACAAGGAACTGCAACCACGttgtctctccttttcttca
gcGCAGTGCTGTCACATGCCTTCGTTCTGCCCAGTTGGGGGCTCAATGGT
CATTTGAGAATTCCAACGAGATGTGGCAAGGGCAAGGTTGCGACCAGAAT
GATGCTGTTACCGCCCGAAGCCCCTCAATCCTTCATCTGCACCTCGACGA
ACCTCATGATTGCAGCTTCTCGATACATCAAAGATGTACCGTCCACCCTG
ACGGACATGGCGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTGCTTA
CACCAATCCCGACGGGTCGTATACGaacgcgggggaggtggtggagTCTA
CAACGGCGTCAATAccgagcttcctcctccgtacTATGCCGTGGCATTTG
CCCTCGTTCTATTGGTGGTGTCCGGCATTCAGCAACTCTCCCTGGGGAAT
GTGTTTGATGACGAAGAGAAGTCTGCCTCGTCGAGTGGGGCCGTGGCCCG
TCGAATGAACATGCGGAATAGAAGTTTCTTCAAGAAGAAGGTCCAGTCAA
TAAAGAGGAGCAAGAAATTTGAACTTTTGATGCAACAGGATAACGAAACC
ATATGAATGTACAAAGCGGGTAGAGGATTGCGTTACATTTCGGGTGTGCC
TGCCGTGATTCGCAGTCGTAatttccctccgcctcgccgtCTTCGTGCTC
ATGATGGGTCTAAGACAAGGAACTGCAACCACGttgtctctccttttctt
cagcGCAGTGCTGTCACATGCCTTCGTTCTGCCCAGTTGGGGGCTCAATG
GTCATTTGAGAATTCCAACGAGATGTGGCAAGGGCAAGGTTGCGACCAGA
ATGATGCTGTTACCGCCCGAAGCCCCTCAATCCTTCATCTGCACCTCGAC
GAACCTCATGATTGCAGCTTCTCGATACATCAAAGATGTACCGTCCACCC
TGACGGACATGGCGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTGCT
TACACCAATCCCGACGGGTCGTATACGaacgcgggggaggtggtggagTC
TACAACGGCGTCAATAccgagcttcctcctccgtacTATGCCGTGGCATT
TGCCCTCGTTCTATTGGTGGTGTCCGGCATTCAGCAACTCTCCCTGGGGA
ATGTGTTTGATGACGAAGAGAAGTCTGCCTCGTCGAGTGGGGCCGTGGCC
CGTCGAATGAACATGCGGAATAGAAGTTTCTTCAAGAAGAAGGTCCAGTC
AATAAAGAGGAGCAAGAAATTTGAACTTTTGATGCAACAGGATAACGAAA
CCATATGAATGTACAAAGCGGGTAGAGGATTGCGTTACATTTCGGGTGTG
CCTGCCGTGATTCGCAGTCGTAatttccctccgcctcgccgtCTTCGTGC
TCATGATGGGTCTAAGACAAGGAACTGCAACCACGttgtctctccttttc
ttcagcGCAGTGCTGTCACATGCCTTCGTTCTGCCCAGTTGGGGGCTCAA
TGGTCATTTGAGAATTCCAACGAGATGTGGCAAGGGCAAGGTTGCGACCA
GAATGATGCTGTTACCGCCCGAAGCCCCTCAATCCTTCATCTGCACCTCG
ACGAACCTCATGATTGCAGCTTCTCGATACATCAAAGATGTACCGTCCAC
CCTGACGGACATGGCGGACGAAGCCGCGGATGCGGTGGCCTCCACGCCTG
CTTACACCAATCCCGACGGGTCGTATACGaacgcgggggaggtggtggag
TCTACAACGGCGTCAATAccgagcttcctcctccgtacTATGCCGTGGCA
TTTGCCCTCGTTCTATTGGTGGTGTCCGGCATTCAGCAACTCTCCCTGGG
GAATGTGTTTGATGACGAAGAGAAGTCTGCCTCGTCGAGTGGGGCCGTGG
CCCGTCGAATGAACATGCGGAATAGAAGTTTCTTCAAGAAGAAGGTCCAG
TCAATAAAGAGGAGCAAGAAATTTGAACTTTTGATGCAACAGGATAACGA
AACCATATGA

Synonyms

Publications