rna3178, rna3178 (mRNA) Nannochloropsis gaditana

Overview
Namerna3178
Unique Namerna3178
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length420
Alignment locationCM002460.1:928080..929457 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1014
Orig transcript idgnl|cribi|Naga_100099g4.8532.mrna
Orig protein idgnl|cribi|Naga_100099g4.8532
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:928080..929457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g4gene3055Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27496.1cds3170Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3178rna3178-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3178 ID=rna3178|Name=rna3178|organism=Nannochloropsis gaditana|type=mRNA|length=420bp
ATGGAAAATTGGGAGTCCTTCATGAAGGATGAACGTCTTCTCGTCATCGA
CGTTCATCAGGACTGGAGTGGATCTTGTGCTGATGTCGTGGAATCCTTTT
TCCGGAAGCTGTGGATGGAGACGGAAGGCAAAGTTCGATTCCTGAGCGCT
AGCCGTCCGAAAATGGACGCCAAGCTCAAAACTTTGTTCCCTTCAATGCA
TATTAATAGCAGCGCCACAAAAAGCAACAGCACCTCAAACAGTCTCAATA
AAAGTACTCAAAGTAATGTAAATGGAGACGGGGAAGCAAACGGGGTACTT
CCAGATGGAAGCACGCCCTTGTTTCTGTTCGTGAAGAACGAGCAGCTGGT
GTGTCGTTTGGTCGGATTGGATACAGGGATGATTTCCATGTCTATCAAAC
AGCATTTATCTATCAAATAG
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protein sequence of rna3178

>rna3178-protein ID=rna3178-protein|Name=rna3178|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MPPKGVHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAK
RKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSN
ELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDD
ESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKA
AYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGM
DAGVGKSRGW
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mRNA from alignment at CM002460.1:928080..929457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3178 ID=rna3178|Name=rna3178|organism=Nannochloropsis gaditana|type=mRNA|length=1378bp|location=Sequence derived from alignment at CM002460.1:928080..929457- (Nannochloropsis gaditana)
GAGTGTGCAAAGTACAAGTAGCCTTGTCGCCAACCAGAAAAGTTTCCCAG
ACAGTGATATCTTACGGGACCGTGCGGGGTGGAAACTGACGAAGAAAGGC
TCGCCTGGGACTCACGTCGTCACATATCCATTTTACCGCAATATTTGTGG
TTTTATCACCGCTTTGTACATGAAGGCACGTTTCTAAGGATCTCTTTTAC
GCGACCCCATCAAATTCATAGGGCCACCATGCCACCCAAGGGTGTTCACG
CGAAAAAGGCGGCGGCCATGGAAAAGAAGGCCGCTAATGAGAGCGTGAAG
GCGAGTCTGAAAGCAGCAGCACTCGAGGCTCAAGAAGCGGCAGGTTGGTG
CGATGGTGCAGATCTTAGGACAGCAAAACGGAAGGAAGAGGAAGAAAGGA
AAGCACAAGCAAGAGATGCCAAGAAAGCAGAGCTGAAGGCGTTGGAAGAG
CAGGAAAACGCCATGGCAGCTTCCGTGAAGATAAAGCCCAAAAAGGTAGT
AAATTCCAAACAAGCAGCAAAGAGCAATGAATTGAAGGAATTGGAAGCAC
AACTTAAGGCAATGGAGCTGGAGAAAAAAAAGAAGGAAGAGAAGAAAAAG
GCAGCCATTGCAGACGCGGGGAAGAAAGGAAAGAAGAGTAGTGGAAAGAA
AGGAGGGAAAGACGAGCTCTCCGACGACGAAAGCTTGCCTCCCTTGGAAG
CCAATGTGAACAGGCAGATGGCGAATGTTGAGGTTGCGCGTGGTTTGGAT
CAAGCCATTGATTTAATGGGTAGCAGTCGTGGGGGAACCGGGGGCGACGA
TGCCCATCCGGAAAAAAGGCAAAAAGCCGCGTATAAAGCCTTTGAGGAAC
GCATGCTGGCCGAGTTGAAGGAGGAGATGCCAGGCATGCGTCTTTCACAA
TACAAGGATCGAATCTTTGAAATGTGGAAGAAGAGTCCAGAAAACCCCAT
GGTGGCAGCAAGGGTGGCGGCGGGTATGGATGCTGGCGTTGGGAAGTCCC
GAGGATGGTAGGATAGGAACGGAGAGCTTGATTTCGCTACAATTGTTGTG
AGGGACTTTGCTGAGGGACTTTGCTCTCATCCCGTCACCTAGCTATTCTG
GGAATCATGTAATCCTCCGCAGAGAAATCATAAGGCGAGCAATAGTCTTC
GAAGCAGCCCTCGTTCAATGCTTTTCTACTCCTGTTTTGGATTATCATCT
TCTTTGCCTCCGTGCGGACCACACGCTAAAAACGCTCAAACATTTTCTAG
CATACTTGTTCTCAGCCTCCGTCTATTTGATAGATAAATGCTGTTTGATA
GACATGGAAATCATCCCTGTATCCAATCCGACCAAACGACACACCAGCTG
CTCGTTCTTCACGAACAGAAACAAGGGC
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Coding sequence (CDS) from alignment at CM002460.1:928080..929457-

>rna3178 ID=rna3178|Name=rna3178|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at CM002460.1:928080..929457- (Nannochloropsis gaditana)
ATGCCACCCAAGGGTGTTCACGCGAAAAAGGCGGCGGCCATGGAAAAGAA
GGCCGCTAATGAGAGCGTGAAGGCGAGTCTGAAAGCAGCAGCACTCGAGG
CTCAAGAAGCGGCAGGTTGGTGCGATGGTGCAGATCTTAGGACAGCAAAA
CGGAAGGAAGAGGAAGAAAGGAAAGCACAAGCAAGAGATGCCAAGAAAGC
AGAGCTGAAGGCGTTGGAAGAGCAGGAAAACGCCATGGCAGCTTCCGTGA
AGATAAAGCCCAAAAAGGTAGTAAATTCCAAACAAGCAGCAAAGAGCAAT
GAATTGAAGGAATTGGAAGCACAACTTAAGGCAATGGAGCTGGAGAAAAA
AAAGAAGGAAGAGAAGAAAAAGGCAGCCATTGCAGACGCGGGGAAGAAAG
GAAAGAAGAGTAGTGGAAAGAAAGGAGGGAAAGACGAGCTCTCCGACGAC
GAAAGCTTGCCTCCCTTGGAAGCCAATGTGAACAGGCAGATGGCGAATGT
TGAGGTTGCGCGTGGTTTGGATCAAGCCATTGATTTAATGGGTAGCAGTC
GTGGGGGAACCGGGGGCGACGATGCCCATCCGGAAAAAAGGCAAAAAGCC
GCGTATAAAGCCTTTGAGGAACGCATGCTGGCCGAGTTGAAGGAGGAGAT
GCCAGGCATGCGTCTTTCACAATACAAGGATCGAATCTTTGAAATGTGGA
AGAAGAGTCCAGAAAACCCCATGGTGGCAGCAAGGGTGGCGGCGGGTATG
GATGCTGGCGTTGGGAAGTCCCGAGGATGGTAG
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Synonyms
Publications