EWM27496.1, cds3170 (CDS) Nannochloropsis gaditana

Overview
NameEWM27496.1
Unique Namecds3170
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:928447..929229 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27496.1
ProductProtein of unknown function DUF1014
Orig transcript idgnl|cribi|Naga_100099g4.8532.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:928447..929229 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR010422Ccdc124/Lso1/Lso2
Homology
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|585109760|gb|EWM27496.1| (Protein of unknown function DUF1014 [Nannochloropsis gaditana])

HSP 1 Score: 505.368 bits (1300), Expect = 1.232e-180
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MPPKGVHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGMDAGVGKSRGW 260
            MPPKGVHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGMDAGVGKSRGW
Sbjct:    1 MPPKGVHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGMDAGVGKSRGW 260          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|673043457|ref|XP_008875689.1| (hypothetical protein H310_10965 [Aphanomyces invadans] >gi|574468478|gb|ETV95496.1| hypothetical protein H310_10965 [Aphanomyces invadans])

HSP 1 Score: 124.79 bits (312), Expect = 3.603e-31
Identity = 95/242 (39.26%), Postives = 141/242 (58.26%), Query Frame = 0
Query:    2 PPKG-VHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDE-SLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            P KG  ++K  AA ++KAA E+ K S K+A  EA+ AA W  GAD R+AKR ++EE K Q  DAKKAELK L+E+E A  + +K K      +K  A+ +  K  EA L  +    KK  +  +            +  +   +D++  DE S   L  N NR  ++V  A  ++ A+DL+G +       + HPE+R KAAYKAFEE  + +L+E+ PG++LSQYK R+ +MW++SP+NP+
Sbjct:    3 PKKGNTNSKVEAANQRKAAQEAEKKSKKSAQDEARAAAEWSQGADARSAKRAQDEELKRQQADAKKAELKRLQEEEEAAMSGIKAK------AKTKAQKDIDKPWEAALAPV---AKKNNKGSRVPPPPPKAVAVPAPSRPATRDDIVFDERSDDDLFQNRNRMQSDVLEATTIEGALDLLGVN---DKDPERHPERRMKAAYKAFEEATMPQLREDYPGLKLSQYKQRLSDMWRRSPQNPL 232          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|698792418|ref|XP_009829241.1| (hypothetical protein H257_05919 [Aphanomyces astaci] >gi|574115898|gb|ETV81383.1| hypothetical protein H257_05919 [Aphanomyces astaci])

HSP 1 Score: 118.627 bits (296), Expect = 8.171e-29
Identity = 97/249 (38.96%), Postives = 139/249 (55.82%), Query Frame = 0
Query:    2 PPKG-VHAKKAAAMEKKAANESVKASLKAAALEAQEAAGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAA--IADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVA 247
            P KG  + K  AA ++KAA  + K S K+A  EA  AA W  GAD R+AKR +EEE K Q  DAKKAELK L+E+E A  + +K K      +K  A+ +  K  EA L  +  +  K       A  +  A    + +S      DE SDD+    L  N NR   +   A  ++ A+D++G +       + HPE+R KAAYKAFEE  + +L+E+ PG++LSQYK R+ ++W++SP+NP+    VA
Sbjct:    3 PKKGNTNTKVEAANQRKAAQAADKKSKKSAQEEANAAADWAQGADGRSAKRAQEEELKRQQADAKKAELKRLQEEEEAAMSGIKAK------AKSKAQKDIDKPWEAALAPVAKKSNKGSRAPPPAPKVVAAPAPARPASRNDIVFDERSDDD----LFQNRNRLQTDALEATTIEGALDMLGVNDKDP---ERHPERRMKAAYKAFEEVTMVQLREDFPGLKLSQYKQRLSDLWRRSPQNPLNQDTVA 238          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|669139874|ref|XP_008605505.1| (hypothetical protein SDRG_01739 [Saprolegnia diclina VS20] >gi|530742419|gb|EQC40661.1| hypothetical protein SDRG_01739 [Saprolegnia diclina VS20])

HSP 1 Score: 114.775 bits (286), Expect = 2.232e-27
Identity = 80/200 (40.00%), Postives = 118/200 (59.00%), Query Frame = 0
Query:   43 GADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKK-GKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            GAD R +KR++EEE K Q  DAKKAELK L+E+E A  + VK K  K  N K   K  EL        A+E   KK  +  +A  A A +     +  +  G+ ++  ++ +  L  N NR +++   A  ++ A+ L+ +      G++ HPE+R KAAYKAFEE  + +LKE+ PG++LSQYK R+ EMW+KSP+NP+
Sbjct:   45 GADARGSKRQQEEELKRQQADAKKAELKRLQEEEEAALSGVKAK-AKTKNMKDMDKPWEL--------ALEPTGKKSNKGSRAKPAPAPRVIADPAPARPAGRHDIVFNDDI-DLHENKNRHVSDALEATSVEDALALLSTD---DKGNERHPERRAKAAYKAFEEVTMPQLKEDYPGLKLSQYKQRLSEMWRKSPQNPL 231          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|568248684|gb|ETN58521.1| (coiled-coil domain-containing protein 124 [Anopheles darlingi])

HSP 1 Score: 112.849 bits (281), Expect = 6.257e-27
Identity = 75/186 (40.32%), Postives = 104/186 (55.91%), Query Frame = 0
Query:   57 RKAQARDAKKAELKALEEQE-NAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            RKA+A   KKAE KAL EQE N++  + K+  +K+  S          +++A++           EK+  AI        K+            +  + PLE N+NR MA+ EVA+ +DQAI ++  S  G GG D HPEKR KAAYKA+EE  L  LK+E P ++LSQ K  IF+ W+K+PENPM
Sbjct:   58 RKAEA-ARKKAETKALLEQEMNSIKTTAKVSVQKITRS----------QIDAEV-----------EKRNRAIETVSSHPPKTIA----------EPKVAPLEENLNRVMADTEVAQTIDQAIAVLSVS--GEGGADRHPEKRMKAAYKAYEEEQLVRLKQEYPSLKLSQLKQMIFKNWQKAPENPM 209          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|1173932964|gb|OQR84846.1| (hypothetical protein ACHHYP_12626 [Achlya hypogyna])

HSP 1 Score: 113.235 bits (282), Expect = 9.592e-27
Identity = 78/204 (38.24%), Postives = 118/204 (57.84%), Query Frame = 0
Query:   40 WCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLK-AMELEKKKKEEKKKAAIADAGKK-GKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            W  GAD R++KR +EEE K Q  DAKKAELK L+E E A  + +K K           KS   K+++   + A+E   KK  +  +A  A A +   + +  +  G+ ++  ++ L  L  N NR  ++   A  ++ A+ L+ +      G++ HPE+R KAAYKAFEE  + ELK + PG++LSQYK R+ EMW+KSP+NP+
Sbjct:   42 WSQGADQRSSKRAQEEEMKRQQADAKKAELKRLQEAEEAALSGIKAK----------GKSKAQKDMDKPWELALEPVGKKNNKGSRAKPASAPRVIAEPAPARPAGRHDIVFNDDL-DLHENKNRATSDALEATTVEDALALLSTD---DKGNERHPERRAKAAYKAFEEATMPELKADYPGLKLSQYKQRLSEMWRKSPQNPL 231          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|857978663|emb|CEO95546.1| (hypothetical protein PBRA_004272 [Plasmodiophora brassicae])

HSP 1 Score: 109.383 bits (272), Expect = 2.023e-25
Identity = 95/260 (36.54%), Postives = 128/260 (49.23%), Query Frame = 0
Query:    1 MPP-KGVHAKKAAAMEKKAANESVKASLKAAALEAQEA---AGWCDGADLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQ-LKAMELEKKKKEEKKKAAIADAGKKGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPMVAARVAAGMDAGVG 255
            MPP K V+ K AAA E+KAA   V+    A A E QEA     W  GA+ R   R E+ ++K Q  +AKKAELK L+EQE A  +S  ++P +    K   KS   K      L  ++  +  KE  ++A +                           P+E N N          G+D A+D +  S  G    D HPE+R KAAY AFEERML  LK+E P ++LSQYK ++ ++WKKSPENP+  A +      G  
Sbjct:    1 MPPNKKVNTKVAAANERKAA---VQKERDARARERQEADLAEVWSFGANGRQKARAEQNDQKRQQAEAKKAELKRLKEQEEAELSS--MRPARGAARKAMMKSGGPKPTRTSFLSPLQPSEDVKENNREAPV---------------------------PMEPNRNLIDDGFVEVHGIDDALDSLFVS--GAKELDRHPERRAKAAYTAFEERMLPILKDENPHLKLSQYKQKLRDLWKKSPENPLNQASLPYNAKPGTN 226          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|813151019|ref|XP_012201141.1| (hypothetical protein SPRG_06372 [Saprolegnia parasitica CBS 223.65] >gi|641534369|gb|KDO28322.1| hypothetical protein SPRG_06372 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.997 bits (271), Expect = 3.760e-25
Identity = 77/198 (38.89%), Postives = 115/198 (58.08%), Query Frame = 0
Query:   45 DLRTAKRKEEEERKAQARDAKKAELKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIADAGK-KGKKSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            D R +KR++EEE K Q  DAKKAELK L+E+E A  + VK K  K  N K   K  EL        A+E   KK  +  +A  A A +     +  +  G+ ++  ++ +  L  N NR  ++   A  ++ A+ L+ +      G++ HPE+R KAAYKAFEE  + +LKE+ PG++LSQYK R+ +MW+KSP+NP+
Sbjct:   47 DARGSKRQQEEELKRQQADAKKAELKRLQEEEEAALSGVKAK-AKTKNMKDMDKPWEL--------ALEPTGKKSNKGSRAKPASAPRVVADPAPARPAGRHDIVFNDDI-DLHENKNRHASDALEATSVEDALALLSTD---DKGNERHPERRAKAAYKAFEEATMPQLKEDYPGLKLSQYKQRLSDMWRKSPQNPL 231          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|170037438|ref|XP_001846565.1| (coiled-coil domain-containing protein 124 [Culex quinquefasciatus] >gi|167880558|gb|EDS43941.1| coiled-coil domain-containing protein 124 [Culex quinquefasciatus])

HSP 1 Score: 107.457 bits (267), Expect = 8.486e-25
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 0
Query:  155 PLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            PLE N+NR MA+ EVA+ +DQA+ ++       GGDD HPEKR KAAYKAFEE  LA LK+E P ++LSQ K  IF+ W+KSP+NP+
Sbjct:  123 PLEENLNRVMADTEVAQTIDQALAVLAVK---DGGDDKHPEKRMKAAYKAFEEEQLAILKQEHPSLKLSQLKQMIFKDWQKSPQNPL 206          
BLAST of EWM27496.1 vs. NCBI_GenBank
Match: gi|675176671|ref|XP_008897220.1| (hypothetical protein PPTG_05428 [Phytophthora parasitica INRA-310] >gi|568103014|gb|ETN17685.1| hypothetical protein PPTG_05428 [Phytophthora parasitica INRA-310])

HSP 1 Score: 106.686 bits (265), Expect = 4.042e-24
Identity = 87/228 (38.16%), Postives = 122/228 (53.51%), Query Frame = 0
Query:   36 EAAGWCDGADLRTAKRKEEEERKAQARDAKKAE---LKALEEQENAMAASVKIKPKKVVNSKQAAKSNELKELEAQLKAMELEKKKKEEKKKAAIA----DAGKKGK---------------KSSGKKGGKDELSDDESLPPLEANVNRQMANVEVARGLDQAIDLMGSSRGGTGGDDAHPEKRQKAAYKAFEERMLAELKEEMPGMRLSQYKDRIFEMWKKSPENPM 241
            E+A W  G+D+R  KR++EEERK   ++AKKAE   L ALEE           K KK V  K+ AK       E  +K   ++K  +  KK +A A    + G  GK               +++GK G K    ++      +AN NR       AR LD A+DL+     G    + HPE+R KAAYKAFEE ML ++KE+ PG++LSQYK ++ EMW++SP+NP+
Sbjct:   38 ESAEWSKGSDMRAEKRRQEEERKRAEQEAKKAEKQKLLALEEHALDEDKHAIRKQKKTV--KEVAKP-----WEEAIKP-SVKKNNRGSKKPSAFASLQNNGGSSGKITQAEMAALREAEEARTAGKPGKKAIKFENN----FQANRNRNQDEPTEARSLDAALDLLSV---GDKELEKHPERRAKAAYKAFEEVMLPQVKEDYPGLKLSQYKQKLSEMWRRSPDNPL 250          
The following BLAST results are available for this feature:
BLAST of EWM27496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109760|gb|EWM27496.1|1.232e-180100.00Protein of unknown function DUF1014 [Nannochlorops... [more]
gi|673043457|ref|XP_008875689.1|3.603e-3139.26hypothetical protein H310_10965 [Aphanomyces invad... [more]
gi|698792418|ref|XP_009829241.1|8.171e-2938.96hypothetical protein H257_05919 [Aphanomyces astac... [more]
gi|669139874|ref|XP_008605505.1|2.232e-2740.00hypothetical protein SDRG_01739 [Saprolegnia dicli... [more]
gi|568248684|gb|ETN58521.1|6.257e-2740.32coiled-coil domain-containing protein 124 [Anophel... [more]
gi|1173932964|gb|OQR84846.1|9.592e-2738.24hypothetical protein ACHHYP_12626 [Achlya hypogyna... [more]
gi|857978663|emb|CEO95546.1|2.023e-2536.54hypothetical protein PBRA_004272 [Plasmodiophora b... [more]
gi|813151019|ref|XP_012201141.1|3.760e-2538.89hypothetical protein SPRG_06372 [Saprolegnia paras... [more]
gi|170037438|ref|XP_001846565.1|8.486e-2557.47coiled-coil domain-containing protein 124 [Culex q... [more]
gi|675176671|ref|XP_008897220.1|4.042e-2438.16hypothetical protein PPTG_05428 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3178rna3178Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications