rna3177, rna3177 (mRNA) Nannochloropsis gaditana

Overview
Namerna3177
Unique Namerna3177
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1622
Alignment locationCM002460.1:927688..928185 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100099g3.8533.mrna
Orig protein idgnl|cribi|Naga_100099g3.8533
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:927688..928185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g3gene3054Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3177rna3177-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27497.1cds3169Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3177 ID=rna3177|Name=rna3177|organism=Nannochloropsis gaditana|type=mRNA|length=1622bp
CGAACTTGTCGGCCAACCACACACTTTACCACACATAGACAGTTTTTTGC
GGTGAAAATCTGTGAAAAAGCCTAAAGGTATTGGCGCTCCAGGGTCTCCG
CCATGTTGCTATTGAATGAGGCTGATGAGCCAGAGGAGCTTTCCATCTCT
ACACTAGGCTGCGCAGCAGGCCCAATATTTCGTACCGCCGCCACAGGAAG
TTGTCGTGTTAACGTACCCTTTTTGGATACACTAGCGCCGATAACAAAAG
TGGGGGTTGCTGGTGAAGGCTTGCCACAGGGAAGAGCGCGTGAAGATGGA
AAAGGAGGGGGACTGTTGCCTGGGACGGTCCTTGAGCTGTACGGAGCTTC
GGGTAGCGGCAAAACCGAGGTGGCCTTGAATGCAGTGTGCGGATGGGTGC
TTCCTAGAAAATTTAGCGGAGTTGGAGGGGTTGCCGTTGTTGTGGATATG
GATTTTAGGGTAGACGTCCGCAGGTTACGGTGCTTGCTGTTGGGTCGTAT
CCGAAAAGCACTTCAACTAGGGCAGGGAGGCTGGGACGAGAGGAGGCAGG
GCACCAAGCGGAAATGGAGTAATGGCGAGTCTGAGACAAGCTACGGACAG
GGCATATCCGGCAATAACGGGTTCCGCGCAACGACGATGGGCAGCATTGG
AACGCCTGACTCCGCCGGCGCCTGCCAAGGCGGGGAGGACACACCCTTTG
TCTGGACTCAGGCCGCCATGGATCAGGTGGTGCTTGTGCGCTGTGTGGAC
GACTTGGAGGCATTCTCAGTCCTTGAGACCTTGAAATACGATCTTGACAG
GGGCGAAGGGGCGGGTACTCCCACCCTGGTGGTGCTGGACAGCTTAGGCT
CTTGCTTCTACGAGCGGAAGGCCGCAGAAAGCTGCCACCAGGGACAGTCG
TGCTTTGACTACATGATAGCACGCTGCATTGGGCGGATGGCGCAGTCCCA
GGCTGTCTCCGTCATTGCCTGCAAGCCGGCGCTCTTTGCCGGGCAACGGA
CAGTGCACGAAGGCGGGAAAGAGGGAGGGAAGGAAGAAGGGAACGGAAGG
TACCGGTATCCGGGGCTGGAGCACAAAGAGTACATGCCTGGGCAATGGAG
CAGGCTGGTCACGCATCGGCTCACCTTGGTCAAGGAAGGGGGAGAGGGAG
GGAGGGAAGCGGTCTTCTCAGCCAGGGCGGTGCTCCTAGGGGCGCTCCAA
CCGCACCAGCCTGGGCCGACGTGGAAGGGCATGGGGGGGGGAGCAGGGGT
GCTAGCGTCGCACTGTTGGTTTAAGGTCGAGCAGGATGGAATTTGTCAGG
TGGGATGGCCAAAGGAGGACTGTGATAAGTGAGAGGTATGATAGGCCGGT
TGAGGCGCTCATGTCTGGCTTTCAAGCACTCCGAAAGTGCTTTAAATGTG
GAAAATGTGTATAAAGACTGTGTGAATTGCTCTAAAGGACTTGAACGGTA
TCATGAGATAACTAATGTTTGAAATTGAGTGAGGTAGGGGCTTCGAAAAG
GCAGCACAACACGCCTGTCAAGAAGTCCACGAGGTGCCACAAGGGACGGA
AAAATTCGCGACTTCACTCGCTGCAAGACGGGGCACATTTTCACACAAAA
AGCAATCACGGGACTTCGTGCT
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protein sequence of rna3177

>rna3177-protein ID=rna3177-protein|Name=rna3177|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MENWESFMKDERLLVIDVHQDWSGSCADVVESFFRKLWMETEGKVRFLSA
SRPKMDAKLKTLFPSMHINSSATKSNSTSNSLNKSTQSNVNGDGEANGVL
PDGSTPLFLFVKNEQLVCRLVGLDTGMISMSIKQHLSIK
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mRNA from alignment at CM002460.1:927688..928185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3177 ID=rna3177|Name=rna3177|organism=Nannochloropsis gaditana|type=mRNA|length=498bp|location=Sequence derived from alignment at CM002460.1:927688..928185+ (Nannochloropsis gaditana)
ATGGAAAATTGGGAGTCCTTCATGAAGGATGAACGTCTTCTCGGTAAGTT
TCTGGGTACACAAAATTTTTGCAATGCTATATTTTGGTAATAGCTTTCTC
AACCTGCTCACATGTGTCCAGTCATCGACGTTCATCAGGACTGGAGTGGA
TCTTGTGCTGATGTCGTGGAATCCTTTTTCCGGAAGCTGTGGATGGAGAC
GGAAGGCAAAGTTCGATTCCTGAGCGCTAGCCGTCCGAAAATGGACGCCA
AGCTCAAAACTTTGTTCCCTTCAATGCATATTAATAGCAGCGCCACAAAA
AGCAACAGCACCTCAAACAGTCTCAATAAAAGTACTCAAAGTAATGTAAA
TGGAGACGGGGAAGCAAACGGGGTACTTCCAGATGGAAGCACGCCCTTGT
TTCTGTTCGTGAAGAACGAGCAGCTGGTGTGTCGTTTGGTCGGATTGGAT
ACAGGGATGATTTCCATGTCTATCAAACAGCATTTATCTATCAAATAG
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Coding sequence (CDS) from alignment at CM002460.1:927688..928185+

>rna3177 ID=rna3177|Name=rna3177|organism=Nannochloropsis gaditana|type=CDS|length=840bp|location=Sequence derived from alignment at CM002460.1:927688..928185+ (Nannochloropsis gaditana)
ATGGAAAATTGGGAGTCCTTCATGAAGGATGAACGTCTTCTCGTCATCGA
CGTTCATCAGGACTGGAGTGGATCTTGTGCTGATGTCGTGGAATCCTTTT
TCCGGAAGCTGTGGATGGAGACGGAAGGCAAAGTTCGATTCCTGAGCGCT
AGCCGTCCGAAAATGGACGCCAAGCTCAAAACTTTGTTCCCTTCAATGCA
TATTAATAGCAGCGCCACAAAAAGCAACAGCACCTCAAACAGTCTCAATA
AAAGTACTCAAAGTAATGTAAATGGAGACGGGGAAGCAAACGGGGTACTT
CCAGATGGAAGCACGCCCTTGTTTCTGTTCGTGAAGAACGAGCAGCTGGT
GTGTCGTTTGGTCGGATTGGATACAGGGATGATTTCCATGTCTATCAAAC
AGCATTTATCTATCAAATAGATGGAAAATTGGGAGTCCTTCATGAAGGAT
GAACGTCTTCTCGTCATCGACGTTCATCAGGACTGGAGTGGATCTTGTGC
TGATGTCGTGGAATCCTTTTTCCGGAAGCTGTGGATGGAGACGGAAGGCA
AAGTTCGATTCCTGAGCGCTAGCCGTCCGAAAATGGACGCCAAGCTCAAA
ACTTTGTTCCCTTCAATGCATATTAATAGCAGCGCCACAAAAAGCAACAG
CACCTCAAACAGTCTCAATAAAAGTACTCAAAGTAATGTAAATGGAGACG
GGGAAGCAAACGGGGTACTTCCAGATGGAAGCACGCCCTTGTTTCTGTTC
GTGAAGAACGAGCAGCTGGTGTGTCGTTTGGTCGGATTGGATACAGGGAT
GATTTCCATGTCTATCAAACAGCATTTATCTATCAAATAG
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Synonyms
Publications