EWM27497.1, cds3169 (CDS) Nannochloropsis gaditana

Overview
NameEWM27497.1
Unique Namecds3169
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:927688..927730 +
Alignment locationCM002460.1:927809..928185 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27497.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100099g3.8533.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:927688..927730 +
CM002460.1supercontigCM002460.1:927809..928185 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
[Close]
BLAST of EWM27497.1 vs. NCBI_GenBank
Match: gi|585109761|gb|EWM27497.1| (hypothetical protein Naga_100099g3 [Nannochloropsis gaditana])

HSP 1 Score: 286.96 bits (733), Expect = 3.997e-98
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 
Query:    1 MENWESFMKDERLLVIDVHQDWSGSCADVVESFFRKLWMETEGKVRFLSASRPKMDAKLKTLFPSMHINSSATKSNSTSNSLNKSTQSNVNGDGEANGVLPDGSTPLFLFVKNEQLVCRLVGLDTGMISMSIKQHLSIK 139
            MENWESFMKDERLLVIDVHQDWSGSCADVVESFFRKLWMETEGKVRFLSASRPKMDAKLKTLFPSMHINSSATKSNSTSNSLNKSTQSNVNGDGEANGVLPDGSTPLFLFVKNEQLVCRLVGLDTGMISMSIKQHLSIK
Sbjct:    1 MENWESFMKDERLLVIDVHQDWSGSCADVVESFFRKLWMETEGKVRFLSASRPKMDAKLKTLFPSMHINSSATKSNSTSNSLNKSTQSNVNGDGEANGVLPDGSTPLFLFVKNEQLVCRLVGLDTGMISMSIKQHLSIK 139
The following BLAST results are available for this feature:
BLAST of EWM27497.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109761|gb|EWM27497.1|3.997e-98100.00hypothetical protein Naga_100099g3 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3177rna3177Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications