rna3176, rna3176 (mRNA) Nannochloropsis gaditana

Overview
Namerna3176
Unique Namerna3176
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2344
Alignment locationCM002460.1:925874..927495 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100099g2.8535.mrna
Orig protein idgnl|cribi|Naga_100099g2.8535
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:925874..927495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g2gene3053Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27499.1cds3168Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3176rna3176-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3176 ID=rna3176|Name=rna3176|organism=Nannochloropsis gaditana|type=mRNA|length=2344bp
ATGGGGACGGCGGCGGCGGCGGCGGCGGAAAAGCCCGAGGAAGAGGCCCC
AACGGCCGACACATGCCCCACCGAGATGGATTGCGCAGATGCCGGTGCTT
TCTTGCCTTCCAGCTCGCCCTCTGGGTCCTCGATCGACCCTTCGCCGCCC
GTCCCTCCCTCCCTCCCTCCGGCGGCGCCTCCACCCGCGGCCACGGGAAT
CGATCCTGGGACGGGCAAGAGCCAAGGCGAAAGCAACGGAGCGATCCACA
GGGATGGACGTGGGCTCTCCGAGTCGCGGGCTCCATCGGCGGGCAAGAGC
CACCCAAGGGCCTCGGGCGTTACCAGACGTGCCATGGGCGTGCTCCAGCC
CCACCGACCGCGACACCCCCAGCATCCATCGCACCATCCGCACTACCCTT
ACCATGCGCAGCACCTTGTGCGTGGAAGCACCGGCCCACTTCCCCCTCAG
GGGCCTTTCGCGGCAACGTCCCTCCCTCCTCCTTCCCGCCGTGGCCAGGG
GATTGGAGGGCGAAGCGGGGAGGGGGGGAGGGGCTCGGGCACGTCCCCTT
CCAGCGCCTCTCTCGTCCACGCTCATTCTCCGCGGGATCCCAGACAGGGG
CAGCGGCCCCAAGCCCGGCATCCGTGCCGGCAGCCGCAGCCCATGCCTGC
GGCGGACGTGCGTGCAGGCCCCCTTCGCCCCACCCCTCTCCCCGAGGCCG
ACTACCGCCTGGCCGGTCCGCATGAAGCCGCGAGCAGCAAGAGTCACACG
AGTGCCCTGTCCTTCGTCGTGCCGCAAGCGGGGGCGACTGGCGGGCTTTC
CGTCTCTTGGTCGTCGGTGGCGGCGGGCGGCGCGCTTGGGCGGGCAGGGC
GGCAGGAAGGACAGCGTCTTTTACAGCCACAAGCACATCGACAGCAGCAG
CCCACCGCAAAGACGCACAGAGGCGGCTCATCAACCTCCAAGGGACAGGA
ATGGCCCCAGTCGGGAACAGTCGCGGCCCTGTCTTCTCACTCCCATCTGC
TCGGCGCCCCGCAACCCTCCCGGTCGCCGCACGTACAGGCCGCGGGGCCC
ACGCCGAAGCACCCAGTGAGGCCCCTCACTCCCCCTGCCAGCTCGGCGCC
GGTCGCTTCCGGGGCCTACGCGAACGGGAGGGGAGGCGGAATCCGCACGT
CGGTCGCGGGCACCCTGTCCTCCCTCCCGTCCTCTTCCCCTCCCTCGCCC
CCCTTTCTTCCTCAGCGCGCCTCCCCGCTTGCCGCCGCTGGCGCCTACAG
CCCTAGGAGAGGGCGGGAAGGGGAGCCAGCCACCTCCCTCGGTCACGGCA
TGCCTGGAGACAGGGAGAGCGAGGCGGGCAGTGCCAACACCTCGCCCGCG
AGCTTTTCCTCCTCCTCCTCCACCCGGTCCTGCCTGGGCCCGCCCCCCCT
GTACACCTTCTACCTCGAGGACGGCCCTGGCATGGGCCCCTCCCTCTCCC
CCGCCCCGGCCAGCACGCCAGCCCCTCCCCTGCGGATACCCCCCCCCTGT
TCGATCTCCCCTTCCACTCCCTCCACCACCTCCTCCCCTTTCTCTGCCTC
TTCGCCCCCTTCCTCGGCATCTGTCACGCTGGCCTCCTCCCTTGCCTACG
GCTTTCAAGATGCAAATGGGATGGGGCATGCCTCGGGGTCTTCCTCCGCT
CCTCTTTCTCCCGTGGTGTGGTCAAAAACTCCGTCGTTGGGGTCCCCGGA
CATTGCGAGGGGAGTCTGCGAAGAACAGAGGGAAGGCGGGAGGGAAGGAG
GGGGCGGAAAGGACGCTCAGCGCGCGAACGAGGCTTTGGAAATGAGTATG
ATGTCGATTGCGAACCAAATATCTACCAGTATCCTCGATTTTTGAAGGGA
ATGTGTGATACAATTCACATGATGGGGCGACTCGAGGTAAGACCTAGTGC
CGTGACGCCTTTGATAAGAGAGAGTCTCGCAAAGGTTGAGCAAATTGGAA
GGGTGGGTGAGAAGGGAAGGGTGGAGTACGGAGCTCCGCTGCGCCCATGA
CTTTTTTGTTGCATGTCAAGCGATGGAGAGGCCATGTGAAATCAGAAAGA
CAGTGCGAGGTACCGACGCTTTAATTCAGGGAAGAATGTGGTAAGGAAGA
GGATATCCTGCAGGGTGAGACGCCCGAGGAGGGCTATGGGACACGGGGGC
AAGGGTAGAAAGAGCGTCCGTGCTTCTTGATCAGGTCTAGATTAGCGCGA
CGGAAAAGCTGAAGGCGTGCGAAAAGACGTTTTGGGAATAAGAGTAGGAA
AAAACAGAATGAAAAGGCGAAAAGGAGAGGACTGGTGTGCAGGAAGAGGA
TTCAACCCTCCAAAAAGAACGATGCAACCGTTTGGGGGAAAAGG
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protein sequence of rna3176

>rna3176-protein ID=rna3176-protein|Name=rna3176|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MLLLNEADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKV
GVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVL
PRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERRQG
TKRKWSNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFV
WTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGS
CFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRT
VHEGGKEGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKEGGEGG
REAVFSARAVLLGALQPHQPGPTWKGMGGGAGVLASHCWFKVEQDGICQV
GWPKEDCDK
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mRNA from alignment at CM002460.1:925874..927495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3176 ID=rna3176|Name=rna3176|organism=Nannochloropsis gaditana|type=mRNA|length=1622bp|location=Sequence derived from alignment at CM002460.1:925874..927495- (Nannochloropsis gaditana)
CGAACTTGTCGGCCAACCACACACTTTACCACACATAGACAGTTTTTTGC
GGTGAAAATCTGTGAAAAAGCCTAAAGGTATTGGCGCTCCAGGGTCTCCG
CCATGTTGCTATTGAATGAGGCTGATGAGCCAGAGGAGCTTTCCATCTCT
ACACTAGGCTGCGCAGCAGGCCCAATATTTCGTACCGCCGCCACAGGAAG
TTGTCGTGTTAACGTACCCTTTTTGGATACACTAGCGCCGATAACAAAAG
TGGGGGTTGCTGGTGAAGGCTTGCCACAGGGAAGAGCGCGTGAAGATGGA
AAAGGAGGGGGACTGTTGCCTGGGACGGTCCTTGAGCTGTACGGAGCTTC
GGGTAGCGGCAAAACCGAGGTGGCCTTGAATGCAGTGTGCGGATGGGTGC
TTCCTAGAAAATTTAGCGGAGTTGGAGGGGTTGCCGTTGTTGTGGATATG
GATTTTAGGGTAGACGTCCGCAGGTTACGGTGCTTGCTGTTGGGTCGTAT
CCGAAAAGCACTTCAACTAGGGCAGGGAGGCTGGGACGAGAGGAGGCAGG
GCACCAAGCGGAAATGGAGTAATGGCGAGTCTGAGACAAGCTACGGACAG
GGCATATCCGGCAATAACGGGTTCCGCGCAACGACGATGGGCAGCATTGG
AACGCCTGACTCCGCCGGCGCCTGCCAAGGCGGGGAGGACACACCCTTTG
TCTGGACTCAGGCCGCCATGGATCAGGTGGTGCTTGTGCGCTGTGTGGAC
GACTTGGAGGCATTCTCAGTCCTTGAGACCTTGAAATACGATCTTGACAG
GGGCGAAGGGGCGGGTACTCCCACCCTGGTGGTGCTGGACAGCTTAGGCT
CTTGCTTCTACGAGCGGAAGGCCGCAGAAAGCTGCCACCAGGGACAGTCG
TGCTTTGACTACATGATAGCACGCTGCATTGGGCGGATGGCGCAGTCCCA
GGCTGTCTCCGTCATTGCCTGCAAGCCGGCGCTCTTTGCCGGGCAACGGA
CAGTGCACGAAGGCGGGAAAGAGGGAGGGAAGGAAGAAGGGAACGGAAGG
TACCGGTATCCGGGGCTGGAGCACAAAGAGTACATGCCTGGGCAATGGAG
CAGGCTGGTCACGCATCGGCTCACCTTGGTCAAGGAAGGGGGAGAGGGAG
GGAGGGAAGCGGTCTTCTCAGCCAGGGCGGTGCTCCTAGGGGCGCTCCAA
CCGCACCAGCCTGGGCCGACGTGGAAGGGCATGGGGGGGGGAGCAGGGGT
GCTAGCGTCGCACTGTTGGTTTAAGGTCGAGCAGGATGGAATTTGTCAGG
TGGGATGGCCAAAGGAGGACTGTGATAAGTGAGAGGTATGATAGGCCGGT
TGAGGCGCTCATGTCTGGCTTTCAAGCACTCCGAAAGTGCTTTAAATGTG
GAAAATGTGTATAAAGACTGTGTGAATTGCTCTAAAGGACTTGAACGGTA
TCATGAGATAACTAATGTTTGAAATTGAGTGAGGTAGGGGCTTCGAAAAG
GCAGCACAACACGCCTGTCAAGAAGTCCACGAGGTGCCACAAGGGACGGA
AAAATTCGCGACTTCACTCGCTGCAAGACGGGGCACATTTTCACACAAAA
AGCAATCACGGGACTTCGTGCT
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Coding sequence (CDS) from alignment at CM002460.1:925874..927495-

>rna3176 ID=rna3176|Name=rna3176|organism=Nannochloropsis gaditana|type=CDS|length=1230bp|location=Sequence derived from alignment at CM002460.1:925874..927495- (Nannochloropsis gaditana)
ATGTTGCTATTGAATGAGGCTGATGAGCCAGAGGAGCTTTCCATCTCTAC
ACTAGGCTGCGCAGCAGGCCCAATATTTCGTACCGCCGCCACAGGAAGTT
GTCGTGTTAACGTACCCTTTTTGGATACACTAGCGCCGATAACAAAAGTG
GGGGTTGCTGGTGAAGGCTTGCCACAGGGAAGAGCGCGTGAAGATGGAAA
AGGAGGGGGACTGTTGCCTGGGACGGTCCTTGAGCTGTACGGAGCTTCGG
GTAGCGGCAAAACCGAGGTGGCCTTGAATGCAGTGTGCGGATGGGTGCTT
CCTAGAAAATTTAGCGGAGTTGGAGGGGTTGCCGTTGTTGTGGATATGGA
TTTTAGGGTAGACGTCCGCAGGTTACGGTGCTTGCTGTTGGGTCGTATCC
GAAAAGCACTTCAACTAGGGCAGGGAGGCTGGGACGAGAGGAGGCAGGGC
ACCAAGCGGAAATGGAGTAATGGCGAGTCTGAGACAAGCTACGGACAGGG
CATATCCGGCAATAACGGGTTCCGCGCAACGACGATGGGCAGCATTGGAA
CGCCTGACTCCGCCGGCGCCTGCCAAGGCGGGGAGGACACACCCTTTGTC
TGGACTCAGGCCGCCATGGATCAGGTGGTGCTTGTGCGCTGTGTGGACGA
CTTGGAGGCATTCTCAGTCCTTGAGACCTTGAAATACGATCTTGACAGGG
GCGAAGGGGCGGGTACTCCCACCCTGGTGGTGCTGGACAGCTTAGGCTCT
TGCTTCTACGAGCGGAAGGCCGCAGAAAGCTGCCACCAGGGACAGTCGTG
CTTTGACTACATGATAGCACGCTGCATTGGGCGGATGGCGCAGTCCCAGG
CTGTCTCCGTCATTGCCTGCAAGCCGGCGCTCTTTGCCGGGCAACGGACA
GTGCACGAAGGCGGGAAAGAGGGAGGGAAGGAAGAAGGGAACGGAAGGTA
CCGGTATCCGGGGCTGGAGCACAAAGAGTACATGCCTGGGCAATGGAGCA
GGCTGGTCACGCATCGGCTCACCTTGGTCAAGGAAGGGGGAGAGGGAGGG
AGGGAAGCGGTCTTCTCAGCCAGGGCGGTGCTCCTAGGGGCGCTCCAACC
GCACCAGCCTGGGCCGACGTGGAAGGGCATGGGGGGGGGAGCAGGGGTGC
TAGCGTCGCACTGTTGGTTTAAGGTCGAGCAGGATGGAATTTGTCAGGTG
GGATGGCCAAAGGAGGACTGTGATAAGTGA
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Synonyms
Publications